Rh2CG111200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0017215
Physical Location & Seq
Forward (+)
9778062 .. 9788820
10759 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG111200.1

Sequence Viewer

Length: 426 bp
ATGACTTCATCCATGCCTATTCTCCAAAGAATGGACCGTCTCGATCGTTTGCTGCAGTTTCTGGAAGAGAAGCATTGGTTGTCATCCAAGTGTTCTTTGAGTTCTAGTACTGCTCCCGCCTACGAAAGCAGTGAACCTGCCCAAGATCGTGTGTCCTACAAAACACTGTCATCTGCAATTGAAGAAGTACATTGTAAAGGCACGCTGATGGAGCGAGTAGCTATTCTTGAGAGCCGGGTTTTACAGGTATGGATTTCAATTGCTATTGTTTTTGGTGTTGAAGAAGAGAAGTTGGTTTGTATCAATTGTGGCGGACATTGTGATTCTGGACACCACAAGTATAACAAGGGTTTGATCTTGGAATTTCAAGATGCTGATTGTAGCTCTGCCCTCTATTTTCTCCAAGAAAGAGTACTTGAATCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

141

Amino Acids

15.93

Weight (kDa)

5.33

Isoelectric Point (pI)

65.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017215)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g09770 FvH4_1g09770
malus_domestica MD15G1227100.v1.1
prunus_persica Prupe.7G188200_v2.0.a1
rosa_laevigata RLG00000016661
rosa_roxburghii Rroxscaffold_2G00145420
rosa_rugosa Rorug02G0059600
rosa_samantha Rh2AG107000 Rh2BG109400 Rh2CG111200 Rh2DG110800 Rh7BG189800
rosa_wichuraiana Rw2G008290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 145
AccB7I CCANNNNNTGG 1 cut(s) 31
AciI CCGC 2 cut(s) 117, 312
AcsI RAATTY 1 cut(s) 362
AfaI GTAC 3 cut(s) 109, 189, 414
AfiI CCNNNNNNNGG 1 cut(s) 31
AgsI TTSAA 5 cut(s) 182, 258, 281, 368, 419
AluBI AGCT 2 cut(s) 221, 384
AluI AGCT 2 cut(s) 221, 384
Alw26I GTCTC 1 cut(s) 44
AlwNI CAGNNNCTG 1 cut(s) 61
ApeKI GCWGC 1 cut(s) 52
ApoI RAATTY 1 cut(s) 362
AspS9I GGNCC 1 cut(s) 34
AsuC2I CCSGG 1 cut(s) 236
AvaII GGWCC 1 cut(s) 34
BbvI GCAGC 1 cut(s) 39
BccI CCATC 1 cut(s) 202
BcnI CCSGG 1 cut(s) 236
BcoDI GTCTC 1 cut(s) 44
BfaI CTAG 1 cut(s) 105
BfmI CTRYAG 1 cut(s) 53
BfuAI ACCTGC 1 cut(s) 145
BisI GCNGC 1 cut(s) 53
BlsI GCNGC 1 cut(s) 54
BmcAI AGTACT 2 cut(s) 109, 414
Bme1390I CCNGG 1 cut(s) 236
Bme18I GGWCC 1 cut(s) 34
BmgT120I GGNCC 1 cut(s) 34
BmrFI CCNGG 1 cut(s) 236
BmsI GCATC 1 cut(s) 361
BpuEI CTTGAG 1 cut(s) 248
BpuMI CCSGG 1 cut(s) 236
Bsc4I CCNNNNNNNGG 1 cut(s) 31
BseGI GGATG 2 cut(s) 8, 83
BseLI CCNNNNNNNGG 1 cut(s) 31
BseXI GCAGC 1 cut(s) 39
Bsh1285I CGRYCG 1 cut(s) 46
BsiEI CGRYCG 1 cut(s) 46
BsiSI CCGG 1 cut(s) 235
BslI CCNNNNNNNGG 1 cut(s) 31
BsmAI GTCTC 1 cut(s) 44
BsmBI CGTCTC 1 cut(s) 44
Bsp143I GATC 3 cut(s) 43, 145, 354
BspACI CCGC 2 cut(s) 117, 312
BspMAI CTGCAG 1 cut(s) 57
BspMI ACCTGC 1 cut(s) 145
BssMI GATC 3 cut(s) 43, 145, 354
Bst4CI ACNGT 2 cut(s) 38, 168
Bst6I CTCTTC 2 cut(s) 60, 279
BstC8I GCNNGC 1 cut(s) 203
BstF5I GGATG 2 cut(s) 8, 83
BstKTI GATC 3 cut(s) 46, 148, 357
BstMAI GTCTC 1 cut(s) 44
BstMBI GATC 3 cut(s) 43, 145, 354
BstMCI CGRYCG 1 cut(s) 46
BstMWI GCNNNNNNNGC 1 cut(s) 211
BstSCI CCNGG 1 cut(s) 234
BstSFI CTRYAG 1 cut(s) 53
BstV1I GCAGC 1 cut(s) 39
BtsCI GGATG 2 cut(s) 8, 83
BtsI GCAGTG 1 cut(s) 136
BtsIMutI CAGTG 2 cut(s) 136, 164
BveI ACCTGC 1 cut(s) 145
Cac8I GCNNGC 1 cut(s) 203
CaiI CAGNNNCTG 1 cut(s) 61
Cfr13I GGNCC 1 cut(s) 34
Csp6I GTAC 3 cut(s) 108, 188, 413
CviAII CATG 1 cut(s) 13
CviJI RGCY 3 cut(s) 221, 234, 384
CviKI_1 RGCY 3 cut(s) 221, 234, 384
CviQI GTAC 3 cut(s) 108, 188, 413
DpnI GATC 3 cut(s) 45, 147, 356
DpnII GATC 3 cut(s) 43, 145, 354
Eam1104I CTCTTC 2 cut(s) 60, 279
EarI CTCTTC 2 cut(s) 60, 279
EciI GGCGGA 1 cut(s) 327
Eco47I GGWCC 1 cut(s) 34
Esp3I CGTCTC 1 cut(s) 44
FaeI CATG 1 cut(s) 16
FaiI YATR 3 cut(s) 14, 250, 342
FatI CATG 1 cut(s) 12
FauI CCCGC 1 cut(s) 124
Fnu4HI GCNGC 1 cut(s) 53
FokI GGATG 1 cut(s) 70
Fsp4HI GCNGC 1 cut(s) 53
FspBI CTAG 1 cut(s) 105
GluI GCNGC 1 cut(s) 53
HapII CCGG 1 cut(s) 235
Hin1II CATG 1 cut(s) 16
HinfI GANTC 2 cut(s) 323, 419
HpaII CCGG 1 cut(s) 235
Hpy166II GTNNAC 1 cut(s) 134
Hpy188III TCNNGA 5 cut(s) 41, 62, 227, 327, 368
Hpy8I GTNNAC 1 cut(s) 134
HpyCH4III ACNGT 2 cut(s) 38, 168
HpyCH4V TGCA 2 cut(s) 55, 176
HpyF10VI GCNNNNNNNGC 1 cut(s) 211
Hsp92II CATG 1 cut(s) 16
Kzo9I GATC 3 cut(s) 43, 145, 354
LmnI GCTCC 2 cut(s) 118, 211
LpnPI CCDG 5 cut(s) 47, 150, 230, 248, 312
Lsp1109I GCAGC 1 cut(s) 39
LweI GCATC 1 cut(s) 361
MaeI CTAG 1 cut(s) 105
MalI GATC 3 cut(s) 45, 147, 356
MboI GATC 3 cut(s) 43, 145, 354
MboII GAAGA 4 cut(s) 77, 194, 293, 296
MfeI CAATTG 3 cut(s) 177, 258, 304
MluCI AATT 4 cut(s) 177, 258, 304, 362
MnlI CCTC 1 cut(s) 401
MslI CAYNNNNRTG 2 cut(s) 88, 206
MspI CCGG 1 cut(s) 235
MspR9I CCNGG 1 cut(s) 236
MunI CAATTG 3 cut(s) 177, 258, 304
MwoI GCNNNNNNNGC 1 cut(s) 211
NciI CCSGG 1 cut(s) 236
NdeII GATC 3 cut(s) 43, 145, 354
NlaIII CATG 1 cut(s) 16
PfeI GAWTC 2 cut(s) 323, 419
PflMI CCANNNNNTGG 1 cut(s) 31
PkrI GCNGC 1 cut(s) 54
Ple19I CGATCG 1 cut(s) 46
PspPI GGNCC 1 cut(s) 34
PstI CTGCAG 1 cut(s) 57
PstNI CAGNNNCTG 1 cut(s) 61
PvuI CGATCG 1 cut(s) 46
RsaI GTAC 3 cut(s) 109, 189, 414
RsaNI GTAC 3 cut(s) 108, 188, 413
RseI CAYNNNNRTG 2 cut(s) 88, 206
SatI GCNGC 1 cut(s) 53
Sau3AI GATC 3 cut(s) 43, 145, 354
Sau96I GGNCC 1 cut(s) 34
ScaI AGTACT 2 cut(s) 109, 414
ScrFI CCNGG 1 cut(s) 236
SetI ASST 4 cut(s) 139, 223, 249, 386
SfaNI GCATC 1 cut(s) 361
SfcI CTRYAG 1 cut(s) 53
SinI GGWCC 1 cut(s) 34
SmiMI CAYNNNNRTG 2 cut(s) 88, 206
SmlI CTYRAG 1 cut(s) 227
SmoI CTYRAG 1 cut(s) 227
Sse9I AATT 4 cut(s) 177, 258, 304, 362
SsiI CCGC 2 cut(s) 117, 312
SspMI CTAG 1 cut(s) 105
StyD4I CCNGG 1 cut(s) 234
TaaI ACNGT 2 cut(s) 38, 168
TaqI TCGA 1 cut(s) 42
TasI AATT 4 cut(s) 177, 258, 304, 362
TatI WGTACW 3 cut(s) 107, 187, 412
TfiI GAWTC 2 cut(s) 323, 419
TscAI CASTG 2 cut(s) 136, 171
TseI GCWGC 1 cut(s) 52
TspRI CASTG 2 cut(s) 136, 171
Van91I CCANNNNNTGG 1 cut(s) 31
VpaK11BI GGWCC 1 cut(s) 34
XapI RAATTY 1 cut(s) 362
XspI CTAG 1 cut(s) 105
ZrmI AGTACT 2 cut(s) 109, 414
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.