Rh2BG189700

gag-polypeptide of LTR copia-type

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0019088
Physical Location & Seq
Forward (+)
17054565 .. 17055141
577 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG189700.1

Sequence Viewer

Length: 237 bp
ATGAGTAATCTGAACAAATTGGACTTTGCTCCATTAGAAATAACTGGCTCTGGATATCACAGGTGGGTTCATGATGTCTGCCAGCATCTCAAGGCCGATGGAATCTGGGATACGATTCTCAAGCCTAACCAGGACGTGCTAACTGTTGAGCAAGCTCAAGCTTTGAAAGAAAATAGAGTGGCCTTAGAGGCAAATAAGGATGGATCACAAGGTTTCACGAGCTCATTGAAGCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2 zf-CCHC

Protein Analysis

78

Amino Acids

8.71

Weight (kDa)

5.81

Isoelectric Point (pI)

30.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 211
AgsI TTSAA 2 cut(s) 166, 229
AjiI CACGTC 1 cut(s) 136
AjnI CCWGG 1 cut(s) 129
AluBI AGCT 4 cut(s) 155, 161, 222, 232
AluI AGCT 4 cut(s) 155, 161, 222, 232
Alw21I GWGCWC 1 cut(s) 224
AlwI GGATC 1 cut(s) 211
AoxI GGCC 2 cut(s) 93, 180
BanII GRGCYC 1 cut(s) 224
BauI CACGAG 1 cut(s) 217
Bbv12I GWGCWC 1 cut(s) 224
BccI CCATC 2 cut(s) 92, 194
BciT130I CCWGG 1 cut(s) 131
BciVI GTATCC 1 cut(s) 103
BfuI GTATCC 1 cut(s) 103
BglI GCCNNNNNGGC 1 cut(s) 188
Bme1390I CCNGG 1 cut(s) 131
BmgBI CACGTC 1 cut(s) 136
BmrFI CCNGG 1 cut(s) 131
BmsI GCATC 1 cut(s) 94
BpuEI CTTGAG 3 cut(s) 74, 104, 141
Bse1I ACTGG 1 cut(s) 49
BseBI CCWGG 1 cut(s) 131
BseGI GGATG 1 cut(s) 205
BseNI ACTGG 1 cut(s) 49
BshFI GGCC 2 cut(s) 95, 182
BsiHKAI GWGCWC 1 cut(s) 224
BsnI GGCC 2 cut(s) 95, 182
Bsp1286I GDGCHC 1 cut(s) 224
Bsp143I GATC 1 cut(s) 203
BspANI GGCC 2 cut(s) 95, 182
BspHI TCATGA 1 cut(s) 70
BspPI GGATC 1 cut(s) 211
BsrI ACTGG 1 cut(s) 49
BssMI GATC 1 cut(s) 203
BssSI CACGAG 1 cut(s) 217
Bst2BI CACGAG 1 cut(s) 217
Bst2UI CCWGG 1 cut(s) 131
Bst4CI ACNGT 1 cut(s) 145
BstC8I GCNNGC 2 cut(s) 83, 153
BstDEI CTNAG 1 cut(s) 184
BstF5I GGATG 1 cut(s) 205
BstKTI GATC 1 cut(s) 206
BstMBI GATC 1 cut(s) 203
BstMWI GCNNNNNNNGC 1 cut(s) 188
BstNI CCWGG 1 cut(s) 131
BstSCI CCNGG 1 cut(s) 129
BsuI GTATCC 1 cut(s) 103
BsuRI GGCC 2 cut(s) 95, 182
BtrI CACGTC 1 cut(s) 136
BtsCI GGATG 1 cut(s) 205
Cac8I GCNNGC 2 cut(s) 83, 153
CciI TCATGA 1 cut(s) 70
CviAII CATG 1 cut(s) 71
CviJI RGCY 8 cut(s) 48, 95, 124, 155, 161, 182, 222, 232
CviKI_1 RGCY 8 cut(s) 48, 95, 124, 155, 161, 182, 222, 232
DdeI CTNAG 1 cut(s) 184
DpnI GATC 1 cut(s) 205
DpnII GATC 1 cut(s) 203
Ecl136II GAGCTC 1 cut(s) 222
Eco24I GRGCYC 1 cut(s) 224
Eco32I GATATC 1 cut(s) 56
Eco53kI GAGCTC 1 cut(s) 222
EcoICRI GAGCTC 1 cut(s) 222
EcoRII CCWGG 1 cut(s) 129
EcoRV GATATC 1 cut(s) 56
EcoT38I GRGCYC 1 cut(s) 224
FaeI CATG 1 cut(s) 74
FaiI YATR 2 cut(s) 72, 235
FatI CATG 1 cut(s) 70
FokI GGATG 1 cut(s) 212
FriOI GRGCYC 1 cut(s) 224
HaeIII GGCC 2 cut(s) 95, 182
Hin1II CATG 1 cut(s) 74
HindIII AAGCTT 1 cut(s) 159
HinfI GANTC 2 cut(s) 102, 115
Hpy188I TCNGA 1 cut(s) 12
Hpy188III TCNNGA 3 cut(s) 51, 71, 217
HpyCH4III ACNGT 1 cut(s) 145
HpyCH4IV ACGT 1 cut(s) 135
HpyF10VI GCNNNNNNNGC 1 cut(s) 188
HpyF3I CTNAG 1 cut(s) 184
HpySE526I ACGT 1 cut(s) 135
Hsp92II CATG 1 cut(s) 74
Kzo9I GATC 1 cut(s) 203
LmnI GCTCC 1 cut(s) 34
LpnPI CCDG 7 cut(s) 30, 36, 46, 91, 95, 116, 143
LweI GCATC 1 cut(s) 94
MaeII ACGT 1 cut(s) 135
MalI GATC 1 cut(s) 205
MboI GATC 1 cut(s) 203
MhlI GDGCHC 1 cut(s) 224
MluCI AATT 1 cut(s) 17
MnlI CCTC 1 cut(s) 181
MspR9I CCNGG 1 cut(s) 131
MvaI CCWGG 1 cut(s) 131
MwoI GCNNNNNNNGC 1 cut(s) 188
NdeII GATC 1 cut(s) 203
NlaIII CATG 1 cut(s) 74
PagI TCATGA 1 cut(s) 70
PfeI GAWTC 2 cut(s) 102, 115
Psp124BI GAGCTC 1 cut(s) 224
Psp6I CCWGG 1 cut(s) 129
PspGI CCWGG 1 cut(s) 129
SacI GAGCTC 1 cut(s) 224
Sau3AI GATC 1 cut(s) 203
ScrFI CCNGG 1 cut(s) 131
SduI GDGCHC 1 cut(s) 224
SetI ASST 7 cut(s) 65, 138, 157, 163, 214, 224, 234
SfaNI GCATC 1 cut(s) 94
SmlI CTYRAG 3 cut(s) 89, 119, 156
SmoI CTYRAG 3 cut(s) 89, 119, 156
Sse9I AATT 1 cut(s) 17
SstI GAGCTC 1 cut(s) 224
StyD4I CCNGG 1 cut(s) 129
TaaI ACNGT 1 cut(s) 145
TaiI ACGT 1 cut(s) 138
TasI AATT 1 cut(s) 17
TfiI GAWTC 2 cut(s) 102, 115
TspDTI ATGAA 1 cut(s) 59
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.