Rmu_sc0002005.1_g000009

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002005.1
OG0019088
Physical Location & Seq
Reverse (-)
47303 .. 51130
3828 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002005.1_g000009.1.cds

Sequence Viewer

Length: 387 bp
atgaaagacgcttggaatgttgagttgttgatgctggtaaaatttggtagccagatatggtggttgaccggcggcgcgtgggtccaggcgcagctgcctgtggcggcacgtgagggctcgtccggccgttcctggatgagtaacctgaacaaattggattttgctccattaggaacaactggctttggatatcataggtgggttcgtgatatctgccagcatctcaagattgatagaatcctgaatatgattctcaagcctagccaggacgtgctaactgttgagcaagctcaagctttggaagcaaatagagcagccttagaggcaaataaggcgaaagccatcatcctaatgactagtcatatggatgattcgctccagtactag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2 zf-CCHC

Protein Analysis

128

Amino Acids

14.44

Weight (kDa)

7.91

Isoelectric Point (pI)

42.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 77
AciI CCGC 2 cut(s) 72, 104
AcoI YGGCCR 1 cut(s) 124
AcsI RAATTY 1 cut(s) 41
AcvI CACGTG 1 cut(s) 110
AfaI GTAC 1 cut(s) 383
AhlI ACTAGT 1 cut(s) 356
AjiI CACGTC 1 cut(s) 271
AjnI CCWGG 3 cut(s) 84, 131, 264
AluBI AGCT 3 cut(s) 94, 290, 296
AluI AGCT 3 cut(s) 94, 290, 296
AoxI GGCC 1 cut(s) 124
ApeKI GCWGC 3 cut(s) 91, 94, 314
ApoI RAATTY 1 cut(s) 41
AspLEI GCGC 2 cut(s) 77, 91
AspS9I GGNCC 1 cut(s) 82
AvaII GGWCC 1 cut(s) 82
BanII GRGCYC 1 cut(s) 119
BbrPI CACGTG 1 cut(s) 110
BbvI GCAGC 3 cut(s) 81, 103, 326
BccI CCATC 1 cut(s) 350
BceAI ACGGC 1 cut(s) 111
BciT130I CCWGG 3 cut(s) 86, 133, 266
BcuI ACTAGT 1 cut(s) 356
BfaI CTAG 3 cut(s) 261, 357, 385
BglI GCCNNNNNGGC 1 cut(s) 323
BisI GCNGC 5 cut(s) 73, 92, 95, 105, 315
BlsI GCNGC 5 cut(s) 74, 93, 96, 106, 316
BmcAI AGTACT 1 cut(s) 383
Bme1390I CCNGG 3 cut(s) 86, 133, 266
Bme18I GGWCC 1 cut(s) 82
BmgBI CACGTC 1 cut(s) 271
BmgT120I GGNCC 1 cut(s) 82
BmiI GGNNCC 1 cut(s) 83
BmrFI CCNGG 3 cut(s) 86, 133, 266
BmsI GCATC 2 cut(s) 21, 229
BpmI CTGGAG 1 cut(s) 362
BpuEI CTTGAG 3 cut(s) 209, 239, 276
BsaAI YACGTR 1 cut(s) 110
Bse118I RCCGGY 1 cut(s) 68
Bse1I ACTGG 2 cut(s) 184, 379
BseBI CCWGG 3 cut(s) 86, 133, 266
BseGI GGATG 3 cut(s) 141, 345, 373
BseNI ACTGG 2 cut(s) 184, 379
BseX3I CGGCCG 1 cut(s) 124
BseXI GCAGC 3 cut(s) 81, 103, 326
Bsh1236I CGCG 1 cut(s) 77
Bsh1285I CGRYCG 1 cut(s) 127
BshFI GGCC 1 cut(s) 126
BsiEI CGRYCG 1 cut(s) 127
BsiSI CCGG 2 cut(s) 69, 123
BsnI GGCC 1 cut(s) 126
Bsp1286I GDGCHC 1 cut(s) 119
BspACI CCGC 2 cut(s) 72, 104
BspANI GGCC 1 cut(s) 126
BspFNI CGCG 1 cut(s) 77
BspLI GGNNCC 1 cut(s) 83
BsrFI RCCGGY 1 cut(s) 68
BsrI ACTGG 2 cut(s) 184, 379
BssAI RCCGGY 1 cut(s) 68
Bst2UI CCWGG 3 cut(s) 86, 133, 266
Bst4CI ACNGT 1 cut(s) 280
BstBAI YACGTR 1 cut(s) 110
BstC8I GCNNGC 2 cut(s) 218, 288
BstDEI CTNAG 1 cut(s) 319
BstF5I GGATG 3 cut(s) 141, 345, 373
BstFNI CGCG 1 cut(s) 77
BstHHI GCGC 2 cut(s) 77, 91
BstMCI CGRYCG 1 cut(s) 127
BstMWI GCNNNNNNNGC 5 cut(s) 123, 302, 311, 323, 332
BstNI CCWGG 3 cut(s) 86, 133, 266
BstSCI CCNGG 3 cut(s) 84, 131, 264
BstUI CGCG 1 cut(s) 77
BstV1I GCAGC 3 cut(s) 81, 103, 326
BstZI CGGCCG 1 cut(s) 124
BsuRI GGCC 1 cut(s) 126
BtrI CACGTC 1 cut(s) 271
BtsCI GGATG 3 cut(s) 141, 345, 373
Cac8I GCNNGC 2 cut(s) 218, 288
CfoI GCGC 2 cut(s) 77, 91
Cfr10I RCCGGY 1 cut(s) 68
Cfr13I GGNCC 1 cut(s) 82
CseI GACGC 1 cut(s) 17
Csp6I GTAC 1 cut(s) 382
CviQI GTAC 1 cut(s) 382
DdeI CTNAG 1 cut(s) 319
EaeI YGGCCR 1 cut(s) 124
EagI CGGCCG 1 cut(s) 124
EclXI CGGCCG 1 cut(s) 124
Eco24I GRGCYC 1 cut(s) 119
Eco32I GATATC 2 cut(s) 191, 211
Eco47I GGWCC 1 cut(s) 82
Eco52I CGGCCG 1 cut(s) 124
Eco72I CACGTG 1 cut(s) 110
EcoRII CCWGG 3 cut(s) 84, 131, 264
EcoRV GATATC 2 cut(s) 191, 211
EcoT38I GRGCYC 1 cut(s) 119
FaiI YATR 5 cut(s) 58, 195, 248, 363, 365
FauNDI CATATG 1 cut(s) 363
Fnu4HI GCNGC 5 cut(s) 73, 92, 95, 105, 315
FokI GGATG 3 cut(s) 148, 332, 380
FriOI GRGCYC 1 cut(s) 119
Fsp4HI GCNGC 5 cut(s) 73, 92, 95, 105, 315
FspBI CTAG 3 cut(s) 261, 357, 385
GlaI GCGC 2 cut(s) 76, 90
GluI GCNGC 5 cut(s) 73, 92, 95, 105, 315
GsuI CTGGAG 1 cut(s) 362
HaeIII GGCC 1 cut(s) 126
HapII CCGG 2 cut(s) 69, 123
HgaI GACGC 1 cut(s) 17
HhaI GCGC 2 cut(s) 77, 91
Hin6I GCGC 2 cut(s) 75, 89
HinP1I GCGC 2 cut(s) 75, 89
HincII GTYRAC 1 cut(s) 66
HindII GTYRAC 1 cut(s) 66
HindIII AAGCTT 1 cut(s) 294
HinfI GANTC 3 cut(s) 237, 250, 371
HpaII CCGG 2 cut(s) 69, 123
Hpy166II GTNNAC 1 cut(s) 66
Hpy188III TCNNGA 3 cut(s) 206, 226, 241
Hpy8I GTNNAC 1 cut(s) 66
HpyCH4III ACNGT 1 cut(s) 280
HpyCH4IV ACGT 2 cut(s) 109, 270
HpyF10VI GCNNNNNNNGC 5 cut(s) 123, 302, 311, 323, 332
HpyF3I CTNAG 1 cut(s) 319
HpySE526I ACGT 2 cut(s) 109, 270
HspAI GCGC 2 cut(s) 75, 89
LmnI GCTCC 2 cut(s) 169, 381
Lsp1109I GCAGC 3 cut(s) 81, 103, 326
LweI GCATC 2 cut(s) 21, 229
MaeI CTAG 3 cut(s) 261, 357, 385
MaeII ACGT 2 cut(s) 109, 270
MaeIII GTNAC 1 cut(s) 140
MhlI GDGCHC 1 cut(s) 119
MluCI AATT 2 cut(s) 41, 152
MnlI CCTC 2 cut(s) 106, 316
MslI CAYNNNNRTG 2 cut(s) 350, 366
MspA1I CMGCKG 1 cut(s) 94
MspI CCGG 2 cut(s) 69, 123
MspR9I CCNGG 3 cut(s) 86, 133, 266
MvaI CCWGG 3 cut(s) 86, 133, 266
MvnI CGCG 1 cut(s) 77
MwoI GCNNNNNNNGC 5 cut(s) 123, 302, 311, 323, 332
NdeI CATATG 1 cut(s) 363
NlaIV GGNNCC 1 cut(s) 83
PfeI GAWTC 3 cut(s) 237, 250, 371
PfoI TCCNGGA 1 cut(s) 131
PkrI GCNGC 5 cut(s) 74, 93, 96, 106, 316
PmaCI CACGTG 1 cut(s) 110
PmlI CACGTG 1 cut(s) 110
Ppu21I YACGTR 1 cut(s) 110
Psp6I CCWGG 3 cut(s) 84, 131, 264
PspCI CACGTG 1 cut(s) 110
PspGI CCWGG 3 cut(s) 84, 131, 264
PspN4I GGNNCC 1 cut(s) 83
PspPI GGNCC 1 cut(s) 82
PvuII CAGCTG 1 cut(s) 94
RsaI GTAC 1 cut(s) 383
RsaNI GTAC 1 cut(s) 382
RseI CAYNNNNRTG 2 cut(s) 350, 366
SatI GCNGC 5 cut(s) 73, 92, 95, 105, 315
Sau96I GGNCC 1 cut(s) 82
ScaI AGTACT 1 cut(s) 383
ScrFI CCNGG 3 cut(s) 86, 133, 266
SduI GDGCHC 1 cut(s) 119
SetI ASST 7 cut(s) 96, 112, 147, 200, 273, 292, 298
SfaNI GCATC 2 cut(s) 21, 229
SinI GGWCC 1 cut(s) 82
SmiMI CAYNNNNRTG 2 cut(s) 350, 366
SmlI CTYRAG 3 cut(s) 224, 254, 291
SmoI CTYRAG 3 cut(s) 224, 254, 291
SpeI ACTAGT 1 cut(s) 356
Sse9I AATT 2 cut(s) 41, 152
SsiI CCGC 2 cut(s) 72, 104
SspMI CTAG 3 cut(s) 261, 357, 385
StyD4I CCNGG 3 cut(s) 84, 131, 264
TaaI ACNGT 1 cut(s) 280
TaiI ACGT 2 cut(s) 112, 273
TasI AATT 2 cut(s) 41, 152
TatI WGTACW 1 cut(s) 381
TauI GCSGC 2 cut(s) 75, 107
TfiI GAWTC 3 cut(s) 237, 250, 371
TseI GCWGC 3 cut(s) 91, 94, 314
TspDTI ATGAA 1 cut(s) 17
VpaK11BI GGWCC 1 cut(s) 82
XapI RAATTY 1 cut(s) 41
XspI CTAG 3 cut(s) 261, 357, 385
ZrmI AGTACT 1 cut(s) 383
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.