Rmu_sc0002320.1_g000012

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002320.1
OG0019088
Physical Location & Seq
Forward (+)
65463 .. 67945
2483 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002320.1_g000012.1.cds

Sequence Viewer

Length: 933 bp
atgtccgcacgtggctatctaaccctagtgtacgttggcggtaaacctacaatcggaaaggtgggattttcttttctctctgatcgctcttccggtgatcgaggtgggcttcggcttcatcgagtttctgcggctcgatggtggtggcatggagggagtgaggttagaaagccttctggctgtttcatgtttctaccaacaacgttcgaaccaaggggattgaatctggttttggtggtgtttatcgatgttgtccggatcgcggaggatggcggcgataaggtggctggtctggacgcttggctgggaacgatgggatcggtgactgtggtagcagctccggtggactttgttgctgtcagtggagtttctgtgctagctaagcctcgctgcccctacagcgccacaagccctgttttccttctgccctcgcatgcgctcgcctgccctagagaccgcgactcaccagcgacaccgcgaccctgtcaccccagtgtcatcgcaacctgcccgcgatggcgtcaccctgatacccagcgaccccgcgacctcgcaaccacactaatatgtgattccgagaccccacgactccgagattccgcgacccccacgactttgcgaccacgttgcagtcctacaagtctgcttgcttgcaccaggactaaagctcatctccaatcctacgataaggaccaaatacgttccgcaatcctaagaggaacaactggctctggatatcacaggtgtgttcatgatgttcgccaacatctcaaggccaatagaatcttggatatgattatcgagcatagccaggatgtgccaactattgagcaagctcaagctttggaatcaaatatagcagccttaaaggcaaataaggcgaaagccatcatcctaatgactcgtcatatggatgattccctccagtactag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

310

Amino Acids

33.96

Weight (kDa)

9.5

Isoelectric Point (pI)

52.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 515
AccII CGCG 6 cut(s) 263, 459, 478, 514, 546, 602
AccIII TCCGGA 1 cut(s) 255
AclI AACGTT 1 cut(s) 203
AclWI GGATC 2 cut(s) 266, 325
AcvI CACGTG 1 cut(s) 11
AcyI GRCGYC 1 cut(s) 520
AfaI GTAC 2 cut(s) 32, 929
AfiI CCNNNNNNNGG 2 cut(s) 53, 262
AgsI TTSAA 1 cut(s) 223
AjnI CCWGG 2 cut(s) 656, 810
AjuI GAANNNNNNNTTGG 2 cut(s) 215, 247
AleI CACNNNNGTG 2 cut(s) 492, 744
AluBI AGCT 5 cut(s) 338, 380, 668, 836, 842
AluI AGCT 5 cut(s) 338, 380, 668, 836, 842
Alw26I GTCTC 2 cut(s) 447, 572
AlwI GGATC 2 cut(s) 266, 325
Aor13HI TCCGGA 1 cut(s) 255
AoxI GGCC 1 cut(s) 774
ApeKI GCWGC 3 cut(s) 335, 390, 860
Asp700I GAANNNNTTC 1 cut(s) 172
AspLEI GCGC 2 cut(s) 404, 439
AspS9I GGNCC 1 cut(s) 691
AsuHPI GGTGA 5 cut(s) 107, 334, 456, 479, 515
AsuII TTCGAA 1 cut(s) 207
AsuNHI GCTAGC 1 cut(s) 376
AvaII GGWCC 1 cut(s) 691
BbrPI CACGTG 1 cut(s) 11
BbvI GCAGC 3 cut(s) 347, 377, 872
BccI CCATC 5 cut(s) 132, 263, 307, 510, 896
BcgI CGANNNNNNTGC 2 cut(s) 609, 643
BciT130I CCWGG 2 cut(s) 658, 812
BcoDI GTCTC 2 cut(s) 447, 572
BfaI CTAG 4 cut(s) 26, 377, 450, 931
BfmI CTRYAG 1 cut(s) 397
BfoI RGCGCY 1 cut(s) 405
BfuAI ACCTGC 1 cut(s) 515
BglI GCCNNNNNGGC 1 cut(s) 869
BisI GCNGC 5 cut(s) 132, 274, 336, 391, 861
BlpI GCTNAGC 1 cut(s) 381
BlsI GCNGC 5 cut(s) 133, 275, 337, 392, 862
BmcAI AGTACT 1 cut(s) 929
Bme1390I CCNGG 2 cut(s) 658, 812
Bme18I GGWCC 1 cut(s) 691
BmgT120I GGNCC 1 cut(s) 691
BmrFI CCNGG 2 cut(s) 658, 812
BmrI ACTGGG 1 cut(s) 486
BmtI GCTAGC 1 cut(s) 380
BmuI ACTGGG 1 cut(s) 486
BpmI CTGGAG 1 cut(s) 908
Bpu1102I GCTNAGC 1 cut(s) 381
Bpu14I TTCGAA 1 cut(s) 207
BpuEI CTTGAG 2 cut(s) 755, 822
Bsa29I ATCGAT 1 cut(s) 246
BsaAI YACGTR 1 cut(s) 11
BsaHI GRCGYC 1 cut(s) 520
BsaI GGTCTC 2 cut(s) 447, 572
BsaJI CCNNGG 1 cut(s) 212
BsaWI WCCGGW 3 cut(s) 92, 255, 340
BsaXI ACNNNNNCTCC 2 cut(s) 357, 387
Bsc4I CCNNNNNNNGG 2 cut(s) 53, 262
Bse1I ACTGG 3 cut(s) 492, 730, 925
BseAI TCCGGA 1 cut(s) 255
BseBI CCWGG 2 cut(s) 658, 812
BseCI ATCGAT 1 cut(s) 246
BseDI CCNNGG 1 cut(s) 212
BseGI GGATG 4 cut(s) 274, 820, 891, 919
BseLI CCNNNNNNNGG 2 cut(s) 53, 262
BseNI ACTGG 3 cut(s) 492, 730, 925
BseXI GCAGC 3 cut(s) 347, 377, 872
BseYI CCCAGC 2 cut(s) 304, 534
Bsh1236I CGCG 6 cut(s) 263, 459, 478, 514, 546, 602
BshFI GGCC 1 cut(s) 776
BshVI ATCGAT 1 cut(s) 246
BsiSI CCGG 3 cut(s) 93, 256, 341
BslI CCNNNNNNNGG 2 cut(s) 53, 262
BsmAI GTCTC 2 cut(s) 447, 572
BsnI GGCC 1 cut(s) 776
Bso31I GGTCTC 2 cut(s) 447, 572
Bsp119I TTCGAA 1 cut(s) 207
Bsp13I TCCGGA 1 cut(s) 255
Bsp143I GATC 4 cut(s) 82, 97, 258, 317
Bsp1720I GCTNAGC 1 cut(s) 381
BspANI GGCC 1 cut(s) 776
BspDI ATCGAT 1 cut(s) 246
BspEI TCCGGA 1 cut(s) 255
BspFNI CGCG 6 cut(s) 263, 459, 478, 514, 546, 602
BspHI TCATGA 1 cut(s) 751
BspMI ACCTGC 1 cut(s) 515
BspOI GCTAGC 1 cut(s) 380
BspPI GGATC 2 cut(s) 266, 325
BspQI GCTCTTC 1 cut(s) 94
BspT104I TTCGAA 1 cut(s) 207
BspTNI GGTCTC 2 cut(s) 447, 572
BsrI ACTGG 3 cut(s) 492, 730, 925
BssECI CCNNGG 1 cut(s) 212
BssMI GATC 4 cut(s) 82, 97, 258, 317
BssNI GRCGYC 1 cut(s) 520
BssT1I CCWWGG 1 cut(s) 212
Bst2UI CCWGG 2 cut(s) 658, 812
Bst4CI ACNGT 1 cut(s) 328
Bst6I CTCTTC 1 cut(s) 94
BstACI GRCGYC 1 cut(s) 520
BstBAI YACGTR 1 cut(s) 11
BstBI TTCGAA 1 cut(s) 207
BstC8I GCNNGC 8 cut(s) 378, 435, 441, 445, 512, 648, 652, 834
BstDEI CTNAG 2 cut(s) 381, 713
BstF5I GGATG 4 cut(s) 274, 820, 891, 919
BstFNI CGCG 6 cut(s) 263, 459, 478, 514, 546, 602
BstH2I RGCGCY 1 cut(s) 405
BstHHI GCGC 2 cut(s) 404, 439
BstKTI GATC 4 cut(s) 85, 100, 261, 320
BstMAI GTCTC 2 cut(s) 447, 572
BstMBI GATC 4 cut(s) 82, 97, 258, 317
BstMWI GCNNNNNNNGC 5 cut(s) 382, 399, 408, 869, 878
BstNI CCWGG 2 cut(s) 658, 812
BstNSI RCATGY 1 cut(s) 437
BstSCI CCNGG 2 cut(s) 656, 810
BstSFI CTRYAG 1 cut(s) 397
BstUI CGCG 6 cut(s) 263, 459, 478, 514, 546, 602
BstV1I GCAGC 3 cut(s) 347, 377, 872
Bsu15I ATCGAT 1 cut(s) 246
BsuRI GGCC 1 cut(s) 776
BsuTUI ATCGAT 1 cut(s) 246
BtgZI GCGATG 2 cut(s) 484, 529
BtsCI GGATG 4 cut(s) 274, 820, 891, 919
BtsIMutI CAGTG 2 cut(s) 367, 499
BveI ACCTGC 1 cut(s) 515
Cac8I GCNNGC 8 cut(s) 378, 435, 441, 445, 512, 648, 652, 834
CciI TCATGA 1 cut(s) 751
CfoI GCGC 2 cut(s) 404, 439
Cfr13I GGNCC 1 cut(s) 691
ClaI ATCGAT 1 cut(s) 246
CseI GACGC 2 cut(s) 305, 509
Csp6I GTAC 2 cut(s) 31, 928
CviAII CATG 4 cut(s) 149, 187, 434, 752
CviQI GTAC 2 cut(s) 31, 928
DdeI CTNAG 2 cut(s) 381, 713
DpnI GATC 4 cut(s) 84, 99, 260, 319
DpnII GATC 4 cut(s) 82, 97, 258, 317
Eam1104I CTCTTC 1 cut(s) 94
EarI CTCTTC 1 cut(s) 94
Eco130I CCWWGG 1 cut(s) 212
Eco31I GGTCTC 2 cut(s) 447, 572
Eco32I GATATC 1 cut(s) 737
Eco47I GGWCC 1 cut(s) 691
Eco72I CACGTG 1 cut(s) 11
EcoRII CCWGG 2 cut(s) 656, 810
EcoRV GATATC 1 cut(s) 737
EcoT14I CCWWGG 1 cut(s) 212
ErhI CCWWGG 1 cut(s) 212
FaeI CATG 4 cut(s) 152, 190, 437, 755
FatI CATG 4 cut(s) 148, 186, 433, 751
FauI CCCGC 2 cut(s) 519, 551
FauNDI CATATG 1 cut(s) 909
Fnu4HI GCNGC 5 cut(s) 132, 274, 336, 391, 861
FokI GGATG 4 cut(s) 281, 827, 878, 926
Fsp4HI GCNGC 5 cut(s) 132, 274, 336, 391, 861
FspBI CTAG 4 cut(s) 26, 377, 450, 931
GlaI GCGC 2 cut(s) 403, 438
GluI GCNGC 5 cut(s) 132, 274, 336, 391, 861
GsaI CCCAGC 2 cut(s) 308, 538
GsuI CTGGAG 1 cut(s) 908
HaeII RGCGCY 1 cut(s) 405
HaeIII GGCC 1 cut(s) 776
HapII CCGG 3 cut(s) 93, 256, 341
HgaI GACGC 2 cut(s) 305, 509
HhaI GCGC 2 cut(s) 404, 439
Hin1I GRCGYC 1 cut(s) 520
Hin1II CATG 4 cut(s) 152, 190, 437, 755
Hin6I GCGC 2 cut(s) 402, 437
HinP1I GCGC 2 cut(s) 402, 437
HindIII AAGCTT 1 cut(s) 840
HinfI GANTC 9 cut(s) 223, 461, 572, 588, 596, 783, 848, 901, 917
HpaII CCGG 3 cut(s) 93, 256, 341
HphI GGTGA 5 cut(s) 107, 334, 456, 479, 515
Hpy166II GTNNAC 3 cut(s) 31, 44, 346
Hpy188I TCNGA 4 cut(s) 56, 82, 577, 593
Hpy188III TCNNGA 4 cut(s) 256, 293, 732, 752
Hpy8I GTNNAC 3 cut(s) 31, 44, 346
HpyAV CCTTC 2 cut(s) 183, 431
HpyCH4III ACNGT 1 cut(s) 328
HpyCH4IV ACGT 5 cut(s) 10, 33, 203, 625, 700
HpyCH4V TGCA 2 cut(s) 630, 654
HpyF10VI GCNNNNNNNGC 5 cut(s) 382, 399, 408, 869, 878
HpyF3I CTNAG 2 cut(s) 381, 713
HpySE526I ACGT 5 cut(s) 10, 33, 203, 625, 700
Hsp92I GRCGYC 1 cut(s) 520
Hsp92II CATG 4 cut(s) 152, 190, 437, 755
HspAI GCGC 2 cut(s) 402, 437
Kpn2I TCCGGA 1 cut(s) 255
Kzo9I GATC 4 cut(s) 82, 97, 258, 317
LguI GCTCTTC 1 cut(s) 94
LmnI GCTCC 1 cut(s) 343
Lsp1109I GCAGC 3 cut(s) 347, 377, 872
MaeI CTAG 4 cut(s) 26, 377, 450, 931
MaeII ACGT 5 cut(s) 10, 33, 203, 625, 700
MaeIII GTNAC 3 cut(s) 322, 485, 521
MalI GATC 4 cut(s) 84, 99, 260, 319
MboI GATC 4 cut(s) 82, 97, 258, 317
MboII GAAGA 1 cut(s) 81
MlyI GAGTC 3 cut(s) 455, 582, 895
MnlI CCTC 9 cut(s) 95, 146, 154, 259, 396, 439, 560, 710, 932
MroI TCCGGA 1 cut(s) 255
MroXI GAANNNNTTC 1 cut(s) 172
MseI TTAA 1 cut(s) 866
MslI CAYNNNNRTG 5 cut(s) 492, 565, 744, 896, 912
MspI CCGG 3 cut(s) 93, 256, 341
MspR9I CCNGG 2 cut(s) 658, 812
MvaI CCWGG 2 cut(s) 658, 812
MvnI CGCG 6 cut(s) 263, 459, 478, 514, 546, 602
MwoI GCNNNNNNNGC 5 cut(s) 382, 399, 408, 869, 878
NdeI CATATG 1 cut(s) 909
NdeII GATC 4 cut(s) 82, 97, 258, 317
NheI GCTAGC 1 cut(s) 376
NlaIII CATG 4 cut(s) 152, 190, 437, 755
NmuCI GTSAC 3 cut(s) 322, 485, 521
NspI RCATGY 1 cut(s) 437
NspV TTCGAA 1 cut(s) 207
OliI CACNNNNGTG 2 cut(s) 492, 744
PaeI GCATGC 1 cut(s) 437
PagI TCATGA 1 cut(s) 751
PciSI GCTCTTC 1 cut(s) 94
PcsI WCGNNNNNNNCGW 1 cut(s) 118
PdmI GAANNNNTTC 1 cut(s) 172
PfeI GAWTC 6 cut(s) 223, 572, 596, 783, 848, 917
PflFI GACNNNGTC 1 cut(s) 483
PkrI GCNGC 5 cut(s) 133, 275, 337, 392, 862
PleI GAGTC 3 cut(s) 455, 582, 895
PmaCI CACGTG 1 cut(s) 11
PmlI CACGTG 1 cut(s) 11
PpsI GAGTC 3 cut(s) 455, 582, 895
Ppu21I YACGTR 1 cut(s) 11
Psp1406I AACGTT 1 cut(s) 203
Psp6I CCWGG 2 cut(s) 656, 810
PspCI CACGTG 1 cut(s) 11
PspFI CCCAGC 2 cut(s) 304, 534
PspGI CCWGG 2 cut(s) 656, 810
PspPI GGNCC 1 cut(s) 691
PsyI GACNNNGTC 1 cut(s) 483
RsaI GTAC 2 cut(s) 32, 929
RsaNI GTAC 2 cut(s) 31, 928
RseI CAYNNNNRTG 5 cut(s) 492, 565, 744, 896, 912
SapI GCTCTTC 1 cut(s) 94
SaqAI TTAA 1 cut(s) 866
SatI GCNGC 5 cut(s) 132, 274, 336, 391, 861
Sau3AI GATC 4 cut(s) 82, 97, 258, 317
Sau96I GGNCC 1 cut(s) 691
ScaI AGTACT 1 cut(s) 929
SchI GAGTC 3 cut(s) 455, 582, 895
ScrFI CCNGG 2 cut(s) 658, 812
SfcI CTRYAG 1 cut(s) 397
SfuI TTCGAA 1 cut(s) 207
SinI GGWCC 1 cut(s) 691
SmiMI CAYNNNNRTG 5 cut(s) 492, 565, 744, 896, 912
SmlI CTYRAG 2 cut(s) 770, 837
SmoI CTYRAG 2 cut(s) 770, 837
SphI GCATGC 1 cut(s) 437
SspMI CTAG 4 cut(s) 26, 377, 450, 931
StyD4I CCNGG 2 cut(s) 656, 810
StyI CCWWGG 1 cut(s) 212
TaaI ACNGT 1 cut(s) 328
TaiI ACGT 5 cut(s) 13, 36, 206, 628, 703
TaqI TCGA 6 cut(s) 100, 121, 136, 207, 246, 801
TatI WGTACW 1 cut(s) 927
TauI GCSGC 2 cut(s) 134, 276
TfiI GAWTC 6 cut(s) 223, 572, 596, 783, 848, 917
Tru1I TTAA 1 cut(s) 866
Tru9I TTAA 1 cut(s) 866
TscAI CASTG 2 cut(s) 367, 499
TseFI GTSAC 3 cut(s) 322, 485, 521
TseI GCWGC 3 cut(s) 335, 390, 860
Tsp45I GTSAC 3 cut(s) 322, 485, 521
TspDTI ATGAA 3 cut(s) 107, 175, 740
TspRI CASTG 2 cut(s) 367, 499
Tth111I GACNNNGTC 1 cut(s) 483
VpaK11BI GGWCC 1 cut(s) 691
XceI RCATGY 1 cut(s) 437
XcmI CCANNNNNNNNNTGG 1 cut(s) 784
XmnI GAANNNNTTC 1 cut(s) 172
XspI CTAG 4 cut(s) 26, 377, 450, 931
ZrmI AGTACT 1 cut(s) 929
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.