Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006420.1

Orthogroup ID

OG0019088

Physical Location & Seq

Genomic Coordinates Forward (+)

178914 .. 180012

Gene Structure 1099 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006420.1_g000042.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

atgtgcctgcccctactcatctgcccagtagctgccgagatctgcagaagcctgtgcctgcatctgccgagtagctgccgaaatctgcccacagcccctacgaacctcctgccgagacttgccgacatatgtcgatacacctgccgagcccctgcgcacctgctgccgagacctgtgcctgtgcctgctcctgctcctgctgacacctgccaagcatctacgcacacctgccgagcatctgtcgacatctaccgacagatccccagcatgccctcgacagcctgtcgacagccccgcctagcatctgcatcaaccctgcagcagctccgcacaagccctgcaaggttctgccatcttcacctgcagccaccacaagctcaactccaaccatcggcgaccaccactttttccggtgaagttttccgtccatctacagtaactttctggatgagtaacctgaacaaattggattttgctccattgggaacaactggctctgaatatcacaagtgggttcgtgatatcctccagcatctcaaggccgatggaatcttgaataagattctcgagcctagccaggacatgctaactgttaagcaagctcaagctttggaagcaaatagagcaaccttagaggcaaataaggagaaagccatcatcctaatgactcgtcatatggatgattcgctctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

230

Amino Acids

25.39

Weight (kDa)

8.95

Isoelectric Point (pI)

69.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019088)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0000156.1_g000003 Rmu_sc0001188.1_g000026 Rmu_sc0002005.1_g000009 Rmu_sc0002320.1_g000012 Rmu_sc0002451.1_g000005 Rmu_sc0005791.1_g000021 Rmu_sc0006420.1_g000042 Rmu_sc0028385.1_g000001
rosa_samantha	Rh2BG189700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	5 cut(s)	149, 168, 215, 236, 369
Acc16I	TGCGCA	1 cut(s)	156
Acc36I	ACCTGC	5 cut(s)	149, 168, 215, 236, 369
AccI	GTMKAC	2 cut(s)	243, 286
AciI	CCGC	2 cut(s)	295, 328
AclWI	GGATC	1 cut(s)	253
AfiI	CCNNNNNNNGG	1 cut(s)	391
AgsI	TTSAA	1 cut(s)	556
AhdI	GACNNNNNGTC	1 cut(s)	282
AjnI	CCWGG	1 cut(s)	576
AluBI	AGCT	6 cut(s)	32, 75, 325, 377, 602, 608
AluI	AGCT	6 cut(s)	32, 75, 325, 377, 602, 608
Alw26I	GTCTC	2 cut(s)	109, 163
AlwI	GGATC	1 cut(s)	253
AlwNI	CAGNNNCTG	1 cut(s)	32
Ama87I	CYCGRG	1 cut(s)	566
AoxI	GGCC	1 cut(s)	540
ApeKI	GCWGC	6 cut(s)	32, 75, 163, 319, 322, 364
AspLEI	GCGC	1 cut(s)	157
AsuHPI	GGTGA	2 cut(s)	350, 425
AvaI	CYCGRG	1 cut(s)	566
BanII	GRGCYC	1 cut(s)	151
BbvI	GCAGC	6 cut(s)	19, 62, 150, 331, 334, 376
BccI	CCATC	5 cut(s)	360, 397, 436, 539, 662
BcgI	CGANNNNNNTGC	6 cut(s)	91, 123, 125, 157, 157, 191
BciT130I	CCWGG	1 cut(s)	578
BcoDI	GTCTC	2 cut(s)	109, 163
BfaI	CTAG	3 cut(s)	299, 573, 691
BfmI	CTRYAG	4 cut(s)	43, 317, 362, 432
BfuAI	ACCTGC	5 cut(s)	149, 168, 215, 236, 369
BglII	AGATCT	1 cut(s)	39
BisI	GCNGC	6 cut(s)	33, 76, 164, 320, 323, 365
BlsI	GCNGC	6 cut(s)	34, 77, 165, 321, 324, 366
Bme1390I	CCNGG	1 cut(s)	578
BmeRI	GACNNNNNGTC	1 cut(s)	282
BmeT110I	CYCGRG	1 cut(s)	566
BmrFI	CCNGG	1 cut(s)	578
BmrI	ACTGGG	1 cut(s)	20
BmsI	GCATC	6 cut(s)	70, 224, 245, 311, 317, 541
BmuI	ACTGGG	1 cut(s)	20
BoxI	GACNNNNGTC	1 cut(s)	129
BpmI	CTGGAG	1 cut(s)	512
BpuEI	CTTGAG	2 cut(s)	521, 588
BsaI	GGTCTC	1 cut(s)	163
BsaWI	WCCGGW	1 cut(s)	410
Bsc4I	CCNNNNNNNGG	1 cut(s)	391
Bse1I	ACTGG	2 cut(s)	26, 496
BseBI	CCWGG	1 cut(s)	578
BseGI	GGATG	3 cut(s)	453, 657, 685
BseLI	CCNNNNNNNGG	1 cut(s)	391
BseNI	ACTGG	2 cut(s)	26, 496
BseXI	GCAGC	6 cut(s)	19, 62, 150, 331, 334, 376
BseYI	CCCAGC	1 cut(s)	263
BshFI	GGCC	1 cut(s)	542
BsiHKCI	CYCGRG	1 cut(s)	566
BsiSI	CCGG	1 cut(s)	411
BslI	CCNNNNNNNGG	1 cut(s)	391
BsmAI	GTCTC	2 cut(s)	109, 163
BsnI	GGCC	1 cut(s)	542
Bso31I	GGTCTC	1 cut(s)	163
BsoBI	CYCGRG	1 cut(s)	566
Bsp1286I	GDGCHC	1 cut(s)	151
Bsp143I	GATC	2 cut(s)	39, 258
BspACI	CCGC	2 cut(s)	295, 328
BspANI	GGCC	1 cut(s)	542
BspMAI	CTGCAG	3 cut(s)	47, 321, 366
BspMI	ACCTGC	5 cut(s)	149, 168, 215, 236, 369
BspPI	GGATC	1 cut(s)	253
BspTNI	GGTCTC	1 cut(s)	163
BsrI	ACTGG	2 cut(s)	26, 496
BssMI	GATC	2 cut(s)	39, 258
Bst2UI	CCWGG	1 cut(s)	578
Bst4CI	ACNGT	2 cut(s)	436, 592
BstAPI	GCANNNNNTGC	1 cut(s)	163
BstC8I	GCNNGC	5 cut(s)	8, 59, 186, 269, 600
BstDEI	CTNAG	1 cut(s)	631
BstF5I	GGATG	3 cut(s)	453, 657, 685
BstHHI	GCGC	1 cut(s)	157
BstKTI	GATC	2 cut(s)	42, 261
BstMAI	GTCTC	2 cut(s)	109, 163
BstMBI	GATC	2 cut(s)	39, 258
BstMWI	GCNNNNNNNGC	3 cut(s)	163, 614, 623
BstNI	CCWGG	1 cut(s)	578
BstNSI	RCATGY	2 cut(s)	271, 586
BstPAI	GACNNNNGTC	1 cut(s)	129
BstSCI	CCNGG	1 cut(s)	576
BstSFI	CTRYAG	4 cut(s)	43, 317, 362, 432
BstV1I	GCAGC	6 cut(s)	19, 62, 150, 331, 334, 376
BstX2I	RGATCY	2 cut(s)	39, 258
BstYI	RGATCY	2 cut(s)	39, 258
BsuRI	GGCC	1 cut(s)	542
BtsCI	GGATG	3 cut(s)	453, 657, 685
BveI	ACCTGC	5 cut(s)	149, 168, 215, 236, 369
Cac8I	GCNNGC	5 cut(s)	8, 59, 186, 269, 600
CaiI	CAGNNNCTG	1 cut(s)	32
CfoI	GCGC	1 cut(s)	157
CviAII	CATG	2 cut(s)	268, 583
DdeI	CTNAG	1 cut(s)	631
DpnI	GATC	2 cut(s)	41, 260
DpnII	GATC	2 cut(s)	39, 258
DriI	GACNNNNNGTC	1 cut(s)	282
Eam1105I	GACNNNNNGTC	1 cut(s)	282
Eco24I	GRGCYC	1 cut(s)	151
Eco31I	GGTCTC	1 cut(s)	163
Eco32I	GATATC	1 cut(s)	523
Eco88I	CYCGRG	1 cut(s)	566
EcoRII	CCWGG	1 cut(s)	576
EcoRV	GATATC	1 cut(s)	523
EcoT38I	GRGCYC	1 cut(s)	151
FaeI	CATG	2 cut(s)	271, 586
FaiI	YATR	6 cut(s)	128, 130, 269, 584, 675, 677
FatI	CATG	2 cut(s)	267, 582
FauI	CCCGC	1 cut(s)	302
FauNDI	CATATG	2 cut(s)	128, 675
FblI	GTMKAC	2 cut(s)	243, 286
Fnu4HI	GCNGC	6 cut(s)	33, 76, 164, 320, 323, 365
FokI	GGATG	2 cut(s)	460, 644
FriOI	GRGCYC	1 cut(s)	151
Fsp4HI	GCNGC	6 cut(s)	33, 76, 164, 320, 323, 365
FspBI	CTAG	3 cut(s)	299, 573, 691
FspI	TGCGCA	1 cut(s)	156
GlaI	GCGC	1 cut(s)	156
GluI	GCNGC	6 cut(s)	33, 76, 164, 320, 323, 365
GsaI	CCCAGC	1 cut(s)	267
GsuI	CTGGAG	1 cut(s)	512
HaeIII	GGCC	1 cut(s)	542
HapII	CCGG	1 cut(s)	411
HhaI	GCGC	1 cut(s)	157
Hin1II	CATG	2 cut(s)	271, 586
Hin6I	GCGC	1 cut(s)	155
HinP1I	GCGC	1 cut(s)	155
HincII	GTYRAC	2 cut(s)	244, 287
HindII	GTYRAC	2 cut(s)	244, 287
HindIII	AAGCTT	1 cut(s)	606
HinfI	GANTC	4 cut(s)	549, 562, 667, 683
HpaII	CCGG	1 cut(s)	411
HphI	GGTGA	2 cut(s)	350, 425
Hpy166II	GTNNAC	2 cut(s)	244, 287
Hpy188I	TCNGA	1 cut(s)	499
Hpy188III	TCNNGA	4 cut(s)	445, 518, 553, 566
Hpy8I	GTNNAC	2 cut(s)	244, 287
HpyCH4III	ACNGT	2 cut(s)	436, 592
HpyCH4V	TGCA	6 cut(s)	45, 61, 308, 319, 341, 364
HpyF10VI	GCNNNNNNNGC	3 cut(s)	163, 614, 623
HpyF3I	CTNAG	1 cut(s)	631
Hsp92II	CATG	2 cut(s)	271, 586
HspAI	GCGC	1 cut(s)	155
Kzo9I	GATC	2 cut(s)	39, 258
LmnI	GCTCC	4 cut(s)	193, 199, 330, 481
Lsp1109I	GCAGC	6 cut(s)	19, 62, 150, 331, 334, 376
LweI	GCATC	6 cut(s)	70, 224, 245, 311, 317, 541
MaeI	CTAG	3 cut(s)	299, 573, 691
MaeIII	GTNAC	2 cut(s)	436, 452
MalI	GATC	2 cut(s)	41, 260
MboI	GATC	2 cut(s)	39, 258
MboII	GAAGA	1 cut(s)	347
MflI	RGATCY	2 cut(s)	39, 258
MhlI	GDGCHC	1 cut(s)	151
MluCI	AATT	1 cut(s)	464
MlyI	GAGTC	1 cut(s)	661
MmeI	TCCRAC	1 cut(s)	409
MnlI	CCTC	4 cut(s)	116, 283, 536, 628
MseI	TTAA	1 cut(s)	594
MslI	CAYNNNNRTG	2 cut(s)	662, 678
MspI	CCGG	1 cut(s)	411
MspR9I	CCNGG	1 cut(s)	578
MvaI	CCWGG	1 cut(s)	578
MwoI	GCNNNNNNNGC	3 cut(s)	163, 614, 623
NdeI	CATATG	2 cut(s)	128, 675
NdeII	GATC	2 cut(s)	39, 258
NlaIII	CATG	2 cut(s)	271, 586
NmeAIII	GCCGAG	6 cut(s)	61, 93, 138, 170, 192, 257
NsbI	TGCGCA	1 cut(s)	156
NspI	RCATGY	2 cut(s)	271, 586
PaeI	GCATGC	1 cut(s)	271
PaeR7I	CTCGAG	1 cut(s)	566
PaqCI	CACCTGC	5 cut(s)	149, 168, 215, 236, 369
PfeI	GAWTC	3 cut(s)	549, 562, 683
PkrI	GCNGC	6 cut(s)	34, 77, 165, 321, 324, 366
PleI	GAGTC	1 cut(s)	661
PpsI	GAGTC	1 cut(s)	661
PshAI	GACNNNNGTC	1 cut(s)	129
Psp6I	CCWGG	1 cut(s)	576
PspFI	CCCAGC	1 cut(s)	263
PspGI	CCWGG	1 cut(s)	576
PstI	CTGCAG	3 cut(s)	47, 321, 366
PstNI	CAGNNNCTG	1 cut(s)	32
PsuI	RGATCY	2 cut(s)	39, 258
RseI	CAYNNNNRTG	2 cut(s)	662, 678
SalI	GTCGAC	2 cut(s)	242, 285
SaqAI	TTAA	1 cut(s)	594
SatI	GCNGC	6 cut(s)	33, 76, 164, 320, 323, 365
Sau3AI	GATC	2 cut(s)	39, 258
SchI	GAGTC	1 cut(s)	661
ScrFI	CCNGG	1 cut(s)	578
SduI	GDGCHC	1 cut(s)	151
SfaNI	GCATC	6 cut(s)	70, 224, 245, 311, 317, 541
SfcI	CTRYAG	4 cut(s)	43, 317, 362, 432
Sfr274I	CTCGAG	1 cut(s)	566
SlaI	CTCGAG	1 cut(s)	566
SmiMI	CAYNNNNRTG	2 cut(s)	662, 678
SmlI	CTYRAG	3 cut(s)	536, 566, 603
SmoI	CTYRAG	3 cut(s)	536, 566, 603
SphI	GCATGC	1 cut(s)	271
Sse9I	AATT	1 cut(s)	464
SsiI	CCGC	2 cut(s)	295, 328
SspMI	CTAG	3 cut(s)	299, 573, 691
StyD4I	CCNGG	1 cut(s)	576
TaaI	ACNGT	2 cut(s)	436, 592
TaqI	TCGA	5 cut(s)	133, 243, 275, 286, 567
TasI	AATT	1 cut(s)	464
TfiI	GAWTC	3 cut(s)	549, 562, 683
Tru1I	TTAA	1 cut(s)	594
Tru9I	TTAA	1 cut(s)	594
TseI	GCWGC	6 cut(s)	32, 75, 163, 319, 322, 364
TspGWI	ACGGA	1 cut(s)	413
XceI	RCATGY	2 cut(s)	271, 586
XhoI	CTCGAG	1 cut(s)	566
XmiI	GTMKAC	2 cut(s)	243, 286
XspI	CTAG	3 cut(s)	299, 573, 691

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.