Rmu_sc0005791.1_g000021

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005791.1
OG0019088
Physical Location & Seq
Forward (+)
109689 .. 115322
5634 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005791.1_g000021.1.cds

Sequence Viewer

Length: 621 bp
atgagtaacctgaacaaattggactttgctccattgggaacaactggctctggatatcacaggtgggttagtgatatccgccagcatctcaaggctgatagaatcctggatatgattctcgagcctagccaggacgtgctaactgttgagcaagctcaagctttggaagcaaatagagcagccttagaggcaaataaggcgaaagccatcatcctaatgactcgtcatatggatgattcgctccatcaattggatttgactatactagagagtttacatcgaaagactttcgatggatattgcaatgggtttgatgttggacattacattcccatgtacacacccaattggtctcgcggatacgactacgatggtagtccgaacattgctatgctaattcgtctacgacctaccgccactcaatgtacctctgcgttacagctagtgactggtctgtccccactatgtctcatctcgatccctactaaagtgacgagatcacacaaatatgctgcaaacattcctgcaaggatggacgtccctacgagaggacgttgtgccaccctacacggaggtgggtatagcgccaacgccaaagagagtggcactctggcgttatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2 zf-CCHC

Protein Analysis

206

Amino Acids

22.72

Weight (kDa)

8.35

Isoelectric Point (pI)

50.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 454
AatII GACGTC 1 cut(s) 540
AccB7I CCANNNNNTGG 1 cut(s) 250
AccI GTMKAC 1 cut(s) 403
AccII CGCG 1 cut(s) 357
AciI CCGC 3 cut(s) 79, 357, 414
AclWI GGATC 1 cut(s) 472
AcyI GRCGYC 1 cut(s) 537
AfaI GTAC 2 cut(s) 338, 427
AfiI CCNNNNNNNGG 2 cut(s) 250, 548
AjiI CACGTC 1 cut(s) 136
AjnI CCWGG 2 cut(s) 105, 129
AleI CACNNNNGTG 1 cut(s) 573
AluBI AGCT 3 cut(s) 155, 161, 442
AluI AGCT 3 cut(s) 155, 161, 442
Alw26I GTCTC 2 cut(s) 357, 473
AlwI GGATC 1 cut(s) 472
Ama87I CYCGRG 1 cut(s) 119
ApeKI GCWGC 2 cut(s) 179, 512
AspLEI GCGC 1 cut(s) 587
AvaI CYCGRG 1 cut(s) 119
BbvI GCAGC 2 cut(s) 191, 499
BccI CCATC 5 cut(s) 215, 252, 287, 365, 526
BciT130I CCWGG 2 cut(s) 107, 131
BciVI GTATCC 1 cut(s) 353
BcoDI GTCTC 2 cut(s) 357, 473
BfaI CTAG 3 cut(s) 126, 266, 443
BfoI RGCGCY 1 cut(s) 588
BfuI GTATCC 1 cut(s) 353
BglI GCCNNNNNGGC 1 cut(s) 188
BisI GCNGC 2 cut(s) 180, 513
BlsI GCNGC 2 cut(s) 181, 514
Bme1390I CCNGG 2 cut(s) 107, 131
BmeT110I CYCGRG 1 cut(s) 119
BmgBI CACGTC 1 cut(s) 136
BmrFI CCNGG 2 cut(s) 107, 131
BmsI GCATC 1 cut(s) 94
BplI GAGNNNNNCTC 1 cut(s) 592
BpuEI CTTGAG 2 cut(s) 74, 141
BsaHI GRCGYC 1 cut(s) 537
BsaI GGTCTC 1 cut(s) 357
Bsc4I CCNNNNNNNGG 2 cut(s) 250, 548
Bse1I ACTGG 2 cut(s) 49, 454
Bse3DI GCAATG 2 cut(s) 310, 384
BseBI CCWGG 2 cut(s) 107, 131
BseGI GGATG 3 cut(s) 210, 238, 537
BseLI CCNNNNNNNGG 2 cut(s) 250, 548
BseMI GCAATG 2 cut(s) 310, 384
BseNI ACTGG 2 cut(s) 49, 454
BseXI GCAGC 2 cut(s) 191, 499
Bsh1236I CGCG 1 cut(s) 357
BsiHKCI CYCGRG 1 cut(s) 119
BslFI GGGAC 2 cut(s) 442, 524
BslI CCNNNNNNNGG 2 cut(s) 250, 548
BsmAI GTCTC 2 cut(s) 357, 473
BsmFI GGGAC 2 cut(s) 442, 524
Bso31I GGTCTC 1 cut(s) 357
BsoBI CYCGRG 1 cut(s) 119
Bsp1407I TGTACA 1 cut(s) 336
Bsp143I GATC 2 cut(s) 477, 497
BspACI CCGC 3 cut(s) 79, 357, 414
BspFNI CGCG 1 cut(s) 357
BspPI GGATC 1 cut(s) 472
BspTNI GGTCTC 1 cut(s) 357
BsrDI GCAATG 2 cut(s) 310, 384
BsrGI TGTACA 1 cut(s) 336
BsrI ACTGG 2 cut(s) 49, 454
BssMI GATC 2 cut(s) 477, 497
BssNI GRCGYC 1 cut(s) 537
Bst2UI CCWGG 2 cut(s) 107, 131
Bst4CI ACNGT 1 cut(s) 145
BstACI GRCGYC 1 cut(s) 537
BstAUI TGTACA 1 cut(s) 336
BstC8I GCNNGC 2 cut(s) 83, 153
BstDEI CTNAG 1 cut(s) 184
BstENI CCTNNNNNAGG 1 cut(s) 546
BstF5I GGATG 3 cut(s) 210, 238, 537
BstFNI CGCG 1 cut(s) 357
BstH2I RGCGCY 1 cut(s) 588
BstHHI GCGC 1 cut(s) 587
BstKTI GATC 2 cut(s) 480, 500
BstMAI GTCTC 2 cut(s) 357, 473
BstMBI GATC 2 cut(s) 477, 497
BstMWI GCNNNNNNNGC 4 cut(s) 167, 176, 188, 197
BstNI CCWGG 2 cut(s) 107, 131
BstSCI CCNGG 2 cut(s) 105, 129
BstUI CGCG 1 cut(s) 357
BstV1I GCAGC 2 cut(s) 191, 499
BsuI GTATCC 1 cut(s) 353
BtrI CACGTC 1 cut(s) 136
BtsCI GGATG 3 cut(s) 210, 238, 537
Cac8I GCNNGC 2 cut(s) 83, 153
CfoI GCGC 1 cut(s) 587
Csp6I GTAC 2 cut(s) 337, 426
CspCI CAANNNNNGTGG 2 cut(s) 583, 618
CviAII CATG 1 cut(s) 334
CviJI RGCY 9 cut(s) 48, 95, 124, 129, 155, 161, 182, 206, 442
CviKI_1 RGCY 9 cut(s) 48, 95, 124, 129, 155, 161, 182, 206, 442
CviQI GTAC 2 cut(s) 337, 426
DdeI CTNAG 1 cut(s) 184
DpnI GATC 2 cut(s) 479, 499
DpnII GATC 2 cut(s) 477, 497
DrdI GACNNNNNNGTC 1 cut(s) 454
DseDI GACNNNNNNGTC 1 cut(s) 454
EciI GGCGGA 1 cut(s) 68
Eco31I GGTCTC 1 cut(s) 357
Eco32I GATATC 2 cut(s) 56, 76
Eco88I CYCGRG 1 cut(s) 119
EcoNI CCTNNNNNAGG 1 cut(s) 546
EcoRII CCWGG 2 cut(s) 105, 129
EcoRV GATATC 2 cut(s) 56, 76
FaeI CATG 1 cut(s) 337
FaqI GGGAC 2 cut(s) 442, 524
FatI CATG 1 cut(s) 333
FauNDI CATATG 1 cut(s) 228
FblI GTMKAC 1 cut(s) 403
Fnu4HI GCNGC 2 cut(s) 180, 513
FokI GGATG 3 cut(s) 197, 245, 544
Fsp4HI GCNGC 2 cut(s) 180, 513
FspBI CTAG 3 cut(s) 126, 266, 443
GlaI GCGC 1 cut(s) 586
GluI GCNGC 2 cut(s) 180, 513
HaeII RGCGCY 1 cut(s) 588
HhaI GCGC 1 cut(s) 587
Hin1I GRCGYC 1 cut(s) 537
Hin1II CATG 1 cut(s) 337
Hin6I GCGC 1 cut(s) 585
HinP1I GCGC 1 cut(s) 585
HindIII AAGCTT 1 cut(s) 159
HinfI GANTC 4 cut(s) 102, 115, 220, 236
Hpy166II GTNNAC 3 cut(s) 275, 339, 404
Hpy188I TCNGA 1 cut(s) 381
Hpy188III TCNNGA 3 cut(s) 51, 119, 475
Hpy8I GTNNAC 3 cut(s) 275, 339, 404
HpyCH4III ACNGT 1 cut(s) 145
HpyCH4IV ACGT 3 cut(s) 135, 537, 553
HpyCH4V TGCA 3 cut(s) 303, 515, 527
HpyF10VI GCNNNNNNNGC 4 cut(s) 167, 176, 188, 197
HpyF3I CTNAG 1 cut(s) 184
HpySE526I ACGT 3 cut(s) 135, 537, 553
Hsp92I GRCGYC 1 cut(s) 537
Hsp92II CATG 1 cut(s) 337
HspAI GCGC 1 cut(s) 585
Kzo9I GATC 2 cut(s) 477, 497
LmnI GCTCC 2 cut(s) 34, 246
Lsp1109I GCAGC 2 cut(s) 191, 499
LweI GCATC 1 cut(s) 94
MaeI CTAG 3 cut(s) 126, 266, 443
MaeII ACGT 3 cut(s) 135, 537, 553
MaeIII GTNAC 4 cut(s) 5, 435, 445, 490
MalI GATC 2 cut(s) 479, 499
MboI GATC 2 cut(s) 477, 497
MfeI CAATTG 2 cut(s) 248, 346
MluCI AATT 4 cut(s) 17, 248, 346, 396
MlyI GAGTC 1 cut(s) 214
MmeI TCCRAC 1 cut(s) 298
MnlI CCTC 4 cut(s) 181, 439, 542, 566
MslI CAYNNNNRTG 6 cut(s) 215, 231, 332, 389, 507, 573
MspR9I CCNGG 2 cut(s) 107, 131
MunI CAATTG 2 cut(s) 248, 346
MvaI CCWGG 2 cut(s) 107, 131
MvnI CGCG 1 cut(s) 357
MwoI GCNNNNNNNGC 4 cut(s) 167, 176, 188, 197
NdeI CATATG 1 cut(s) 228
NdeII GATC 2 cut(s) 477, 497
NlaIII CATG 1 cut(s) 337
NmuCI GTSAC 2 cut(s) 445, 490
OliI CACNNNNGTG 1 cut(s) 573
PaeR7I CTCGAG 1 cut(s) 119
PfeI GAWTC 3 cut(s) 102, 115, 236
PflMI CCANNNNNTGG 1 cut(s) 250
PfoI TCCNGGA 1 cut(s) 105
PkrI GCNGC 2 cut(s) 181, 514
PleI GAGTC 1 cut(s) 214
PpsI GAGTC 1 cut(s) 214
Psp6I CCWGG 2 cut(s) 105, 129
PspGI CCWGG 2 cut(s) 105, 129
RsaI GTAC 2 cut(s) 338, 427
RsaNI GTAC 2 cut(s) 337, 426
RseI CAYNNNNRTG 6 cut(s) 215, 231, 332, 389, 507, 573
SatI GCNGC 2 cut(s) 180, 513
Sau3AI GATC 2 cut(s) 477, 497
SchI GAGTC 1 cut(s) 214
ScrFI CCNGG 2 cut(s) 107, 131
SfaNI GCATC 1 cut(s) 94
Sfr274I CTCGAG 1 cut(s) 119
SlaI CTCGAG 1 cut(s) 119
SmiMI CAYNNNNRTG 6 cut(s) 215, 231, 332, 389, 507, 573
SmlI CTYRAG 3 cut(s) 89, 119, 156
SmoI CTYRAG 3 cut(s) 89, 119, 156
Sse9I AATT 4 cut(s) 17, 248, 346, 396
SsiI CCGC 3 cut(s) 79, 357, 414
SspMI CTAG 3 cut(s) 126, 266, 443
StyD4I CCNGG 2 cut(s) 105, 129
TaaI ACNGT 1 cut(s) 145
TaiI ACGT 3 cut(s) 138, 540, 556
TaqI TCGA 4 cut(s) 120, 280, 291, 476
TasI AATT 4 cut(s) 17, 248, 346, 396
TatI WGTACW 1 cut(s) 336
TfiI GAWTC 3 cut(s) 102, 115, 236
TseFI GTSAC 2 cut(s) 445, 490
TseI GCWGC 2 cut(s) 179, 512
Tsp45I GTSAC 2 cut(s) 445, 490
TspGWI ACGGA 1 cut(s) 585
Van91I CCANNNNNTGG 1 cut(s) 250
XagI CCTNNNNNAGG 1 cut(s) 546
XhoI CTCGAG 1 cut(s) 119
XmiI GTMKAC 1 cut(s) 403
XspI CTAG 3 cut(s) 126, 266, 443
ZraI GACGTC 1 cut(s) 538
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.