Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0017628

Physical Location & Seq

Genomic Coordinates Forward (+)

1561957 .. 1564281

Gene Structure 2325 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0021300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGGAAGAGGAGGATTTGGACTATGTTCTGGTGCCACTGGGTCTGTGTGTTCTGGGAACATATCATGTTTGGCTTCTCATCACCGTGCTACGTCATCCAATACGAACTGTGATCGGTCTCAATGCTCAGTCTCGTCACCAATGGGTCTTATCCATGATGAGTGACCCTTTGAAGAATGGTGTTTTGGCTGTTCAGACAATACGCAACAACATAATGGCATCCACACTTTTGGCAACAACAGCTATCACTCTCAGTTCTCTTATCAGTGTATTTGTCAGCAGTACATCAAACTCTGGCAACACCTCGAAACTAATTTATGGCAATAAGACAGCCACTCTCTCTTCAATAAAGTACTTCTCTATATTGCTGTGCTTTCTTGTTGCCTTTCTCTGCAATGTGCAGTCCATTAGATACTATGCCCATGTTAGCTTCTTGGCCACTGTTCCAACATGGCAAGGTAGAAAGGATTGTATTGAGTATGTTGCAAGAAACTTGAATCGGGGAAGCTACTTTTGGTCACTTGGATTGCGAGCTTTCTACTTCTCATTCCCTCTCTTCCTTTGGATATTTGGGCCTATACCCATGTTTGCATGTAGCTGTGTTATCTCTTGTGTTCTTTATTTCCTGGACACCACCACCAGCTTCACACGACATCTTCACAGTTACTCAATCAAAGAGGTGAAAACTGATAATGATCTAGAATCGCTCGGACAGTTATCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0010087 GO:0010088 GO:0010089 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_CC_LHEQLE Myb_DNA-binding

Protein Analysis

240

Amino Acids

27.04

Weight (kDa)

8.67

Isoelectric Point (pI)

37.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF599	PF04654	9 - 213	2.8e-73	Protein of unknown function, DUF599

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0017628)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g21811 FvH4_3g29731
rosa_multiflora	Rmu_sc0000902.1_g000006
rosa_roxburghii	Rroxscaffold_1G00049460 Rroxscaffold_2G00097660
rosa_rugosa	Rorug06G0116300 Rorug07G0021200 Rorug07G0021200 Rorug07G0021200 Rorug07G0021300 Rorug07G0021400
rosa_samantha	Rh7DG326200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	31
AcoI	YGGCCR	1 cut(s)	435
AfaI	GTAC	2 cut(s)	283, 353
AgsI	TTSAA	3 cut(s)	172, 345, 496
AjnI	CCWGG	1 cut(s)	624
AjuI	GAANNNNNNNTTGG	4 cut(s)	167, 199, 496, 528
AluBI	AGCT	6 cut(s)	242, 429, 507, 533, 597, 642
AluI	AGCT	6 cut(s)	242, 429, 507, 533, 597, 642
Alw26I	GTCTC	2 cut(s)	122, 135
AoxI	GGCC	2 cut(s)	435, 572
AspS9I	GGNCC	1 cut(s)	572
AsuHPI	GGTGA	3 cut(s)	73, 128, 691
BalI	TGGCCA	1 cut(s)	437
BanI	GGYRCC	1 cut(s)	31
BciT130I	CCWGG	1 cut(s)	626
BcoDI	GTCTC	2 cut(s)	122, 135
BfaI	CTAG	1 cut(s)	698
BmcAI	AGTACT	1 cut(s)	353
Bme1390I	CCNGG	1 cut(s)	626
BmgT120I	GGNCC	1 cut(s)	572
BmiI	GGNNCC	1 cut(s)	33
BmrFI	CCNGG	1 cut(s)	626
BmrI	ACTGGG	1 cut(s)	47
BmsI	GCATC	1 cut(s)	227
BmuI	ACTGGG	1 cut(s)	47
BsaBI	GATNNNNATC	1 cut(s)	693
BsaI	GGTCTC	1 cut(s)	122
Bse1I	ACTGG	1 cut(s)	42
Bse3DI	GCAATG	1 cut(s)	400
Bse8I	GATNNNNATC	1 cut(s)	693
BseBI	CCWGG	1 cut(s)	626
BseGI	GGATG	2 cut(s)	94, 218
BseJI	GATNNNNATC	1 cut(s)	693
BseMI	GCAATG	1 cut(s)	400
BseMII	CTCAG	2 cut(s)	140, 265
BseNI	ACTGG	1 cut(s)	42
BseRI	GAGGAG	1 cut(s)	23
BsgI	GTGCAG	1 cut(s)	419
BshFI	GGCC	2 cut(s)	437, 574
BshNI	GGYRCC	1 cut(s)	31
BsmAI	GTCTC	2 cut(s)	122, 135
BsnI	GGCC	2 cut(s)	437, 574
Bso31I	GGTCTC	1 cut(s)	122
Bsp143I	GATC	2 cut(s)	111, 694
BspANI	GGCC	2 cut(s)	437, 574
BspCNI	CTCAG	2 cut(s)	139, 264
BspLI	GGNNCC	1 cut(s)	33
BspT107I	GGYRCC	1 cut(s)	31
BspTNI	GGTCTC	1 cut(s)	122
BsrDI	GCAATG	1 cut(s)	400
BsrI	ACTGG	1 cut(s)	42
BssMI	GATC	2 cut(s)	111, 694
Bst2UI	CCWGG	1 cut(s)	626
Bst4CI	ACNGT	5 cut(s)	85, 109, 442, 662, 714
Bst6I	CTCTTC	2 cut(s)	346, 560
BstC8I	GCNNGC	1 cut(s)	531
BstDEI	CTNAG	2 cut(s)	126, 251
BstF5I	GGATG	2 cut(s)	94, 218
BstKTI	GATC	2 cut(s)	114, 697
BstMAI	GTCTC	2 cut(s)	122, 135
BstMBI	GATC	2 cut(s)	111, 694
BstMWI	GCNNNNNNNGC	1 cut(s)	239
BstNI	CCWGG	1 cut(s)	626
BstNSI	RCATGY	1 cut(s)	594
BstSCI	CCNGG	1 cut(s)	624
BstXI	CCANNNNNNTGG	1 cut(s)	229
BsuRI	GGCC	2 cut(s)	437, 574
BtsCI	GGATG	2 cut(s)	94, 218
BtsIMutI	CAGTG	3 cut(s)	35, 271, 438
Cac8I	GCNNGC	1 cut(s)	531
Cfr13I	GGNCC	1 cut(s)	572
Csp6I	GTAC	2 cut(s)	282, 352
CviAII	CATG	6 cut(s)	65, 154, 422, 450, 583, 591
CviQI	GTAC	2 cut(s)	282, 352
DdeI	CTNAG	2 cut(s)	126, 251
DpnI	GATC	2 cut(s)	113, 696
DpnII	GATC	2 cut(s)	111, 694
EaeI	YGGCCR	1 cut(s)	435
Eam1104I	CTCTTC	2 cut(s)	346, 560
EarI	CTCTTC	2 cut(s)	346, 560
Eco31I	GGTCTC	1 cut(s)	122
EcoRII	CCWGG	1 cut(s)	624
FaeI	CATG	6 cut(s)	68, 157, 425, 453, 586, 594
FatI	CATG	6 cut(s)	64, 153, 421, 449, 582, 590
FokI	GGATG	2 cut(s)	81, 205
FspBI	CTAG	1 cut(s)	698
HaeIII	GGCC	2 cut(s)	437, 574
Hin1II	CATG	6 cut(s)	68, 157, 425, 453, 586, 594
HinfI	GANTC	2 cut(s)	496, 701
HphI	GGTGA	3 cut(s)	73, 128, 691
Hpy188I	TCNGA	2 cut(s)	195, 710
Hpy188III	TCNNGA	1 cut(s)	698
HpyCH4III	ACNGT	5 cut(s)	85, 109, 442, 662, 714
HpyCH4IV	ACGT	1 cut(s)	91
HpyCH4V	TGCA	4 cut(s)	393, 400, 485, 590
HpyF10VI	GCNNNNNNNGC	1 cut(s)	239
HpyF3I	CTNAG	2 cut(s)	126, 251
HpySE526I	ACGT	1 cut(s)	91
Hsp92II	CATG	6 cut(s)	68, 157, 425, 453, 586, 594
Kzo9I	GATC	2 cut(s)	111, 694
LpnPI	CCDG	7 cut(s)	14, 23, 38, 279, 611, 638, 652
LweI	GCATC	1 cut(s)	227
MaeI	CTAG	1 cut(s)	698
MaeII	ACGT	1 cut(s)	91
MaeIII	GTNAC	4 cut(s)	134, 161, 516, 662
MalI	GATC	2 cut(s)	113, 696
MboI	GATC	2 cut(s)	111, 694
MboII	GAAGA	5 cut(s)	17, 184, 333, 547, 647
MlsI	TGGCCA	1 cut(s)	437
MluCI	AATT	1 cut(s)	312
MluNI	TGGCCA	1 cut(s)	437
MmeI	TCCRAC	1 cut(s)	470
MnlI	CCTC	4 cut(s)	4, 313, 561, 670
Mox20I	TGGCCA	1 cut(s)	437
MscI	TGGCCA	1 cut(s)	437
MslI	CAYNNNNRTG	1 cut(s)	83
Msp20I	TGGCCA	1 cut(s)	437
MspR9I	CCNGG	1 cut(s)	626
MvaI	CCWGG	1 cut(s)	626
MwoI	GCNNNNNNNGC	1 cut(s)	239
NdeII	GATC	2 cut(s)	111, 694
NlaIII	CATG	6 cut(s)	68, 157, 425, 453, 586, 594
NlaIV	GGNNCC	1 cut(s)	33
NmuCI	GTSAC	3 cut(s)	134, 161, 516
NspI	RCATGY	1 cut(s)	594
PfeI	GAWTC	2 cut(s)	496, 701
PfoI	TCCNGGA	1 cut(s)	624
Psp6I	CCWGG	1 cut(s)	624
PspGI	CCWGG	1 cut(s)	624
PspN4I	GGNNCC	1 cut(s)	33
PspPI	GGNCC	1 cut(s)	572
RsaI	GTAC	2 cut(s)	283, 353
RsaNI	GTAC	2 cut(s)	282, 352
RseI	CAYNNNNRTG	1 cut(s)	83
Sau3AI	GATC	2 cut(s)	111, 694
Sau96I	GGNCC	1 cut(s)	572
ScaI	AGTACT	1 cut(s)	353
ScrFI	CCNGG	1 cut(s)	626
SfaNI	GCATC	1 cut(s)	227
SmiMI	CAYNNNNRTG	1 cut(s)	83
Sse9I	AATT	1 cut(s)	312
SspMI	CTAG	1 cut(s)	698
StyD4I	CCNGG	1 cut(s)	624
TaaI	ACNGT	5 cut(s)	85, 109, 442, 662, 714
TaiI	ACGT	1 cut(s)	94
TaqI	TCGA	1 cut(s)	305
TaqII	GACCGA	1 cut(s)	104
TasI	AATT	1 cut(s)	312
TatI	WGTACW	2 cut(s)	281, 351
TfiI	GAWTC	2 cut(s)	496, 701
TscAI	CASTG	3 cut(s)	42, 271, 445
TseFI	GTSAC	3 cut(s)	134, 161, 516
Tsp45I	GTSAC	3 cut(s)	134, 161, 516
TspRI	CASTG	3 cut(s)	42, 271, 445
XbaI	TCTAGA	1 cut(s)	697
XceI	RCATGY	1 cut(s)	594
XspI	CTAG	1 cut(s)	698
ZrmI	AGTACT	1 cut(s)	353

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.