Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0017628

Physical Location & Seq

Genomic Coordinates Forward (+)

15831857 .. 15836037

Gene Structure 4181 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0116300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGGAGACTAAGGAAACCAGTGCTGAGTTGAAGCAGGGTGTGGCATTAGAAATTCAAGATAAAGAAGAAAGGGTTCTCAATGAGAAGGACTTGGAACCAATGACAACAACTAAGGAATGCTCAGTAGACATTGAGTTGGTAGGCAATAGAGTTGCAGATAGCGAAAAGGAAACTTCTTTTTCTGGAAATAGTGGTGACGGTGTTTCACAGGGTGCTGCAGGCAGAGGCGAGGATTCATCAGATGAGAATGCTGACACTAACCGAGATTTTTCTGCAATTCAAAAGCAAATTTTTAACCAGATGGGGGCAGTTCAGAATAATTCTAGAGTCCTTTATAGTGGCACGGATACAAATTTGAAATTGTTGAATATTGGGGTAAACATGCCTGAAACCCATCCGAATTCGGGAATGGACCTGAATGTATCCAGTGGTCATGCCATATGCACAGAGGAAGATCACGACCGGAGAAGAAGAGAAAAGAGAAAGCAGTCTAATAGGGAGTCAGCTAAGAGGTCAAGATTCCGTAGGCAGCAAGAATGTGAGAAACTACGAGAAACTGCAGCGATGCTGAATAGTGAAATATCGGAGCTCCCAAATGAGTTAAGAAGGCTTTCTGAGGAGTGTGGGAAACTTGATGAAGAAAACAGTTCCCTAATTGATGAGATGGAGAAGATGTATGGTCCAGATGCAGTTGCTGATCTCAGAGCTGTGAAAGTCAACTCTTCCGATGATGGAAGCAACAGCATCGAATCAAAAACTCCAAGCAGAGACAACTCAACTTCTCCTACTCCTTCTCATCGAAAAGAGACTTCTCCTACTCCTTCTGAGCCTCGATTATTTGGTGTCAGCCTACGACCAAACTTGGCTGATTGTTTACATAGTTCAAAGGTCCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0010087 GO:0010088 GO:0010089 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_CC_LHEQLE Myb_DNA-binding

Protein Analysis

298

Amino Acids

33.05

Weight (kDa)

5.01

Isoelectric Point (pI)

62.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_1	PF00170	155 - 215	1.3e-11	bZIP transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017628)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g21811 FvH4_3g29731
rosa_multiflora	Rmu_sc0000902.1_g000006
rosa_roxburghii	Rroxscaffold_1G00049460 Rroxscaffold_2G00097660
rosa_rugosa	Rorug06G0116300 Rorug07G0021200 Rorug07G0021200 Rorug07G0021200 Rorug07G0021300 Rorug07G0021400
rosa_samantha	Rh7DG326200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	126
AcsI	RAATTY	4 cut(s)	51, 288, 352, 400
AdeI	CACNNNGTG	1 cut(s)	212
AfiI	CCNNNNNNNGG	2 cut(s)	304, 404
AgsI	TTSAA	6 cut(s)	31, 56, 281, 358, 367, 885
AluBI	AGCT	3 cut(s)	506, 589, 707
AluI	AGCT	3 cut(s)	506, 589, 707
Alw21I	GWGCWC	1 cut(s)	591
Alw26I	GTCTC	2 cut(s)	762, 800
AlwNI	CAGNNNCTG	1 cut(s)	695
ApeKI	GCWGC	3 cut(s)	215, 529, 560
ApoI	RAATTY	4 cut(s)	51, 288, 352, 400
Asp700I	GAANNNNTTC	2 cut(s)	72, 610
AspS9I	GGNCC	3 cut(s)	412, 680, 889
AsuHPI	GGTGA	1 cut(s)	206
AvaII	GGWCC	3 cut(s)	412, 680, 889
BanII	GRGCYC	1 cut(s)	591
Bbv12I	GWGCWC	1 cut(s)	591
BbvI	GCAGC	3 cut(s)	202, 541, 572
BccI	CCATC	4 cut(s)	295, 402, 658, 725
BcgI	CGANNNNNNTGC	2 cut(s)	727, 761
BciVI	GTATCC	2 cut(s)	340, 433
BcoDI	GTCTC	2 cut(s)	762, 800
BfaI	CTAG	1 cut(s)	324
BfmI	CTRYAG	2 cut(s)	216, 558
BfuI	GTATCC	2 cut(s)	340, 433
BisI	GCNGC	3 cut(s)	216, 530, 561
BlsI	GCNGC	3 cut(s)	217, 531, 562
Bme18I	GGWCC	3 cut(s)	412, 680, 889
BmgT120I	GGNCC	3 cut(s)	412, 680, 889
BmiI	GGNNCC	1 cut(s)	96
BmsI	GCATC	3 cut(s)	555, 676, 753
BsaWI	WCCGGW	1 cut(s)	462
BsaXI	ACNNNNNCTCC	2 cut(s)	659, 689
Bsc4I	CCNNNNNNNGG	2 cut(s)	304, 404
Bse1I	ACTGG	3 cut(s)	18, 426, 892
BseGI	GGATG	1 cut(s)	394
BseLI	CCNNNNNNNGG	2 cut(s)	304, 404
BseMII	CTCAG	5 cut(s)	15, 135, 606, 715, 816
BseNI	ACTGG	3 cut(s)	18, 426, 892
BseRI	GAGGAG	1 cut(s)	632
BseXI	GCAGC	3 cut(s)	202, 541, 572
Bsh1285I	CGRYCG	1 cut(s)	463
BsiEI	CGRYCG	1 cut(s)	463
BsiHKAI	GWGCWC	1 cut(s)	591
BsiSI	CCGG	1 cut(s)	463
BslI	CCNNNNNNNGG	2 cut(s)	304, 404
BsmAI	GTCTC	2 cut(s)	762, 800
BsmI	GAATGC	2 cut(s)	122, 253
Bsp1286I	GDGCHC	1 cut(s)	591
Bsp143I	GATC	2 cut(s)	454, 697
BspCNI	CTCAG	5 cut(s)	16, 134, 607, 714, 817
BspLI	GGNNCC	1 cut(s)	96
BspMAI	CTGCAG	2 cut(s)	220, 562
BsrI	ACTGG	3 cut(s)	18, 426, 892
BssMI	GATC	2 cut(s)	454, 697
Bst4CI	ACNGT	2 cut(s)	200, 647
Bst6I	CTCTTC	2 cut(s)	466, 727
BstC8I	GCNNGC	1 cut(s)	220
BstDEI	CTNAG	8 cut(s)	9, 24, 111, 121, 507, 615, 701, 825
BstF5I	GGATG	1 cut(s)	394
BstKTI	GATC	2 cut(s)	457, 700
BstMAI	GTCTC	2 cut(s)	762, 800
BstMBI	GATC	2 cut(s)	454, 697
BstMCI	CGRYCG	1 cut(s)	463
BstNSI	RCATGY	1 cut(s)	385
BstSFI	CTRYAG	2 cut(s)	216, 558
BstV1I	GCAGC	3 cut(s)	202, 541, 572
BsuI	GTATCC	2 cut(s)	340, 433
BtgZI	GCGATG	1 cut(s)	578
BtsCI	GGATG	1 cut(s)	394
BtsIMutI	CAGTG	2 cut(s)	25, 433
Cac8I	GCNNGC	1 cut(s)	220
CaiI	CAGNNNCTG	1 cut(s)	695
Cfr13I	GGNCC	3 cut(s)	412, 680, 889
CviAII	CATG	2 cut(s)	382, 434
CviJI	RGCY	7 cut(s)	506, 589, 610, 707, 829, 849, 866
CviKI_1	RGCY	7 cut(s)	506, 589, 610, 707, 829, 849, 866
DdeI	CTNAG	8 cut(s)	9, 24, 111, 121, 507, 615, 701, 825
DpnI	GATC	2 cut(s)	456, 699
DpnII	GATC	2 cut(s)	454, 697
DraIII	CACNNNGTG	1 cut(s)	212
Eam1104I	CTCTTC	2 cut(s)	466, 727
EarI	CTCTTC	2 cut(s)	466, 727
Ecl136II	GAGCTC	1 cut(s)	589
Eco24I	GRGCYC	1 cut(s)	591
Eco47I	GGWCC	3 cut(s)	412, 680, 889
Eco53kI	GAGCTC	1 cut(s)	589
EcoICRI	GAGCTC	1 cut(s)	589
EcoRI	GAATTC	1 cut(s)	400
EcoT38I	GRGCYC	1 cut(s)	591
FaeI	CATG	2 cut(s)	385, 437
FaiI	YATR	7 cut(s)	336, 383, 435, 440, 442, 678, 879
FatI	CATG	2 cut(s)	381, 433
FauNDI	CATATG	1 cut(s)	440
FblI	GTMKAC	1 cut(s)	126
Fnu4HI	GCNGC	3 cut(s)	216, 530, 561
FokI	GGATG	1 cut(s)	381
FriOI	GRGCYC	1 cut(s)	591
Fsp4HI	GCNGC	3 cut(s)	216, 530, 561
FspBI	CTAG	1 cut(s)	324
GluI	GCNGC	3 cut(s)	216, 530, 561
HapII	CCGG	1 cut(s)	463
Hin1II	CATG	2 cut(s)	385, 437
HincII	GTYRAC	1 cut(s)	718
HindII	GTYRAC	1 cut(s)	718
HinfI	GANTC	5 cut(s)	233, 327, 500, 519, 749
HpaII	CCGG	1 cut(s)	463
HphI	GGTGA	1 cut(s)	206
Hpy166II	GTNNAC	4 cut(s)	127, 379, 718, 875
Hpy188I	TCNGA	8 cut(s)	241, 315, 399, 586, 616, 704, 727, 826
Hpy188III	TCNNGA	7 cut(s)	56, 183, 324, 405, 458, 516, 683
Hpy8I	GTNNAC	4 cut(s)	127, 379, 718, 875
HpyAV	CCTTC	4 cut(s)	79, 600, 801, 831
HpyCH4III	ACNGT	2 cut(s)	200, 647
HpyCH4V	TGCA	6 cut(s)	155, 218, 275, 444, 560, 689
HpyF3I	CTNAG	8 cut(s)	9, 24, 111, 121, 507, 615, 701, 825
Hsp92II	CATG	2 cut(s)	385, 437
Kzo9I	GATC	2 cut(s)	454, 697
LmnI	GCTCC	2 cut(s)	586, 594
Lsp1109I	GCAGC	3 cut(s)	202, 541, 572
LweI	GCATC	3 cut(s)	555, 676, 753
MaeI	CTAG	1 cut(s)	324
MaeIII	GTNAC	1 cut(s)	194
MalI	GATC	2 cut(s)	456, 699
MboI	GATC	2 cut(s)	454, 697
MboII	GAAGA	7 cut(s)	77, 464, 480, 483, 650, 682, 714
MhlI	GDGCHC	1 cut(s)	591
MluCI	AATT	8 cut(s)	51, 276, 288, 319, 352, 359, 400, 654
MlyI	GAGTC	2 cut(s)	336, 509
MnlI	CCTC	6 cut(s)	218, 223, 442, 504, 610, 840
MroXI	GAANNNNTTC	2 cut(s)	72, 610
MseI	TTAA	2 cut(s)	294, 602
MspI	CCGG	1 cut(s)	463
Mva1269I	GAATGC	2 cut(s)	122, 253
NdeI	CATATG	1 cut(s)	440
NdeII	GATC	2 cut(s)	454, 697
NlaIII	CATG	2 cut(s)	385, 437
NlaIV	GGNNCC	1 cut(s)	96
NmuCI	GTSAC	1 cut(s)	194
NspI	RCATGY	1 cut(s)	385
PctI	GAATGC	2 cut(s)	122, 253
PdmI	GAANNNNTTC	2 cut(s)	72, 610
PfeI	GAWTC	3 cut(s)	233, 519, 749
PkrI	GCNGC	3 cut(s)	217, 531, 562
PleI	GAGTC	2 cut(s)	335, 508
PpsI	GAGTC	2 cut(s)	335, 508
Psp124BI	GAGCTC	1 cut(s)	591
PspN4I	GGNNCC	1 cut(s)	96
PspPI	GGNCC	3 cut(s)	412, 680, 889
PstI	CTGCAG	2 cut(s)	220, 562
PstNI	CAGNNNCTG	1 cut(s)	695
SacI	GAGCTC	1 cut(s)	591
SaqAI	TTAA	2 cut(s)	294, 602
SatI	GCNGC	3 cut(s)	216, 530, 561
Sau3AI	GATC	2 cut(s)	454, 697
Sau96I	GGNCC	3 cut(s)	412, 680, 889
SchI	GAGTC	2 cut(s)	336, 509
SduI	GDGCHC	1 cut(s)	591
SetI	ASST	6 cut(s)	417, 508, 515, 591, 709, 891
SfaNI	GCATC	3 cut(s)	555, 676, 753
SfcI	CTRYAG	2 cut(s)	216, 558
SinI	GGWCC	3 cut(s)	412, 680, 889
Sse9I	AATT	8 cut(s)	51, 276, 288, 319, 352, 359, 400, 654
SspI	AATATT	1 cut(s)	370
SspMI	CTAG	1 cut(s)	324
SstI	GAGCTC	1 cut(s)	591
TaaI	ACNGT	2 cut(s)	200, 647
TaqI	TCGA	3 cut(s)	747, 799, 832
TasI	AATT	8 cut(s)	51, 276, 288, 319, 352, 359, 400, 654
TfiI	GAWTC	3 cut(s)	233, 519, 749
Tru1I	TTAA	2 cut(s)	294, 602
Tru9I	TTAA	2 cut(s)	294, 602
TscAI	CASTG	2 cut(s)	25, 433
TseFI	GTSAC	1 cut(s)	194
TseI	GCWGC	3 cut(s)	215, 529, 560
Tsp45I	GTSAC	1 cut(s)	194
TspDTI	ATGAA	2 cut(s)	225, 651
TspGWI	ACGGA	2 cut(s)	359, 512
TspRI	CASTG	2 cut(s)	25, 433
VpaK11BI	GGWCC	3 cut(s)	412, 680, 889
XapI	RAATTY	4 cut(s)	51, 288, 352, 400
XbaI	TCTAGA	1 cut(s)	323
XceI	RCATGY	1 cut(s)	385
XmiI	GTMKAC	1 cut(s)	126
XmnI	GAANNNNTTC	2 cut(s)	72, 610
XspI	CTAG	1 cut(s)	324

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.