Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000902.1

Orthogroup ID

OG0017628

Physical Location & Seq

Genomic Coordinates Forward (+)

8859 .. 9308

Gene Structure 450 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000902.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

atgaggagcacccaacgttgtaaggacatgaatagatatgtgaaggattacttgaagcgaggaataaagttggtagagttggtgccagccatttgtagagcatattgcaggcttagaaacaggttgaaggagttggattatgactctatcaatttaagccatgtgctggccaagcagctgagggagttggaggagcatgctgctaaccgttatagtgacaatgtattctatcttgtaaggaaagaaattaaaagagttggagggctggttacagagaaatctgttgaacgtcatggcagtcgtatctattccatctggaagcacagcgggcctaaccggaaatacactatactatacttccacgataacaaagatggaccaataaagtgttcatgtaggaagatcgattatgatggcatcccatgttgttatgtcatgacacgttcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAR1 MULE SWIM

Protein Analysis

149

Amino Acids

17.68

Weight (kDa)

9.62

Isoelectric Point (pI)

35.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017628)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g21811 FvH4_3g29731
rosa_multiflora	Rmu_sc0000902.1_g000006
rosa_roxburghii	Rroxscaffold_1G00049460 Rroxscaffold_2G00097660
rosa_rugosa	Rorug06G0116300 Rorug07G0021200 Rorug07G0021200 Rorug07G0021200 Rorug07G0021300 Rorug07G0021400
rosa_samantha	Rh7DG326200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	82
AccB7I	CCANNNNNTGG	1 cut(s)	166
AciI	CCGC	1 cut(s)	327
AclI	AACGTT	1 cut(s)	16
AcoI	YGGCCR	1 cut(s)	168
AfiI	CCNNNNNNNGG	1 cut(s)	166
AflIII	ACRYGT	1 cut(s)	440
AgsI	TTSAA	3 cut(s)	55, 127, 287
AjuI	GAANNNNNNNTTGG	2 cut(s)	373, 405
AluBI	AGCT	1 cut(s)	178
AluI	AGCT	1 cut(s)	178
Alw21I	GWGCWC	1 cut(s)	11
AoxI	GGCC	2 cut(s)	168, 329
ApeKI	GCWGC	2 cut(s)	175, 200
AspS9I	GGNCC	2 cut(s)	329, 377
AvaII	GGWCC	1 cut(s)	377
BalI	TGGCCA	1 cut(s)	170
BanI	GGYRCC	1 cut(s)	82
Bbv12I	GWGCWC	1 cut(s)	11
BbvCI	CCTCAGC	1 cut(s)	179
BbvI	GCAGC	2 cut(s)	187, 187
BccI	CCATC	3 cut(s)	320, 368, 407
BisI	GCNGC	2 cut(s)	176, 201
BlsI	GCNGC	2 cut(s)	177, 202
Bme18I	GGWCC	1 cut(s)	377
BmgT120I	GGNCC	2 cut(s)	329, 377
BmiI	GGNNCC	1 cut(s)	84
BmsI	GCATC	1 cut(s)	426
Bpu10I	CCTNAGC	1 cut(s)	179
Bsa29I	ATCGAT	1 cut(s)	405
BsaWI	WCCGGW	1 cut(s)	336
BsaXI	ACNNNNNCTCC	2 cut(s)	252, 282
Bsc4I	CCNNNNNNNGG	1 cut(s)	166
BseCI	ATCGAT	1 cut(s)	405
BseGI	GGATG	1 cut(s)	417
BseLI	CCNNNNNNNGG	1 cut(s)	166
BseMII	CTCAG	1 cut(s)	170
BseRI	GAGGAG	2 cut(s)	19, 206
BseXI	GCAGC	2 cut(s)	187, 187
BshFI	GGCC	2 cut(s)	170, 331
BshNI	GGYRCC	1 cut(s)	82
BshVI	ATCGAT	1 cut(s)	405
BsiHKAI	GWGCWC	1 cut(s)	11
BsiSI	CCGG	1 cut(s)	337
BslI	CCNNNNNNNGG	1 cut(s)	166
BsnI	GGCC	2 cut(s)	170, 331
Bsp1286I	GDGCHC	1 cut(s)	11
Bsp143I	GATC	1 cut(s)	402
BspACI	CCGC	1 cut(s)	327
BspANI	GGCC	2 cut(s)	170, 331
BspCNI	CTCAG	1 cut(s)	171
BspDI	ATCGAT	1 cut(s)	405
BspHI	TCATGA	2 cut(s)	435, 446
BspLI	GGNNCC	1 cut(s)	84
BspT107I	GGYRCC	1 cut(s)	82
BssMI	GATC	1 cut(s)	402
Bst4CI	ACNGT	1 cut(s)	209
BstC8I	GCNNGC	5 cut(s)	87, 110, 168, 198, 329
BstDEI	CTNAG	2 cut(s)	113, 179
BstF5I	GGATG	1 cut(s)	417
BstKTI	GATC	1 cut(s)	405
BstMBI	GATC	1 cut(s)	402
BstMWI	GCNNNNNNNGC	2 cut(s)	172, 328
BstNSI	RCATGY	1 cut(s)	200
BstV1I	GCAGC	2 cut(s)	187, 187
Bsu15I	ATCGAT	1 cut(s)	405
BsuRI	GGCC	2 cut(s)	170, 331
BsuTUI	ATCGAT	1 cut(s)	405
BtsCI	GGATG	1 cut(s)	417
Cac8I	GCNNGC	5 cut(s)	87, 110, 168, 198, 329
CciI	TCATGA	2 cut(s)	435, 446
Cfr13I	GGNCC	2 cut(s)	329, 377
ClaI	ATCGAT	1 cut(s)	405
CviAII	CATG	8 cut(s)	28, 161, 197, 293, 393, 423, 436, 447
CviJI	RGCY	7 cut(s)	89, 112, 159, 170, 178, 265, 331
CviKI_1	RGCY	7 cut(s)	89, 112, 159, 170, 178, 265, 331
DdeI	CTNAG	2 cut(s)	113, 179
DpnI	GATC	1 cut(s)	404
DpnII	GATC	1 cut(s)	402
EaeI	YGGCCR	1 cut(s)	168
Eco47I	GGWCC	1 cut(s)	377
FaeI	CATG	8 cut(s)	31, 164, 200, 296, 396, 426, 439, 450
FalI	AAGNNNNNCTT	2 cut(s)	35, 67
FatI	CATG	8 cut(s)	27, 160, 196, 292, 392, 422, 435, 446
FauI	CCCGC	1 cut(s)	320
Fnu4HI	GCNGC	2 cut(s)	176, 201
FokI	GGATG	1 cut(s)	404
Fsp4HI	GCNGC	2 cut(s)	176, 201
GluI	GCNGC	2 cut(s)	176, 201
HaeIII	GGCC	2 cut(s)	170, 331
HapII	CCGG	1 cut(s)	337
Hin1II	CATG	8 cut(s)	31, 164, 200, 296, 396, 426, 439, 450
HinfI	GANTC	1 cut(s)	143
HpaII	CCGG	1 cut(s)	337
Hpy188III	TCNNGA	3 cut(s)	316, 436, 447
HpyAV	CCTTC	2 cut(s)	37, 121
HpyCH4III	ACNGT	1 cut(s)	209
HpyCH4IV	ACGT	3 cut(s)	16, 289, 442
HpyCH4V	TGCA	1 cut(s)	108
HpyF10VI	GCNNNNNNNGC	2 cut(s)	172, 328
HpyF3I	CTNAG	2 cut(s)	113, 179
HpySE526I	ACGT	3 cut(s)	16, 289, 442
Hsp92II	CATG	8 cut(s)	31, 164, 200, 296, 396, 426, 439, 450
Kzo9I	GATC	1 cut(s)	402
LmnI	GCTCC	2 cut(s)	6, 193
LpnPI	CCDG	7 cut(s)	94, 99, 106, 152, 251, 301, 350
Lsp1109I	GCAGC	2 cut(s)	187, 187
LweI	GCATC	1 cut(s)	426
MaeII	ACGT	3 cut(s)	16, 289, 442
MaeIII	GTNAC	2 cut(s)	215, 268
MalI	GATC	1 cut(s)	404
MboI	GATC	1 cut(s)	402
MboII	GAAGA	1 cut(s)	412
MhlI	GDGCHC	1 cut(s)	11
MlsI	TGGCCA	1 cut(s)	170
MluCI	AATT	2 cut(s)	151, 246
MluNI	TGGCCA	1 cut(s)	170
MlyI	GAGTC	1 cut(s)	137
MmeI	TCCRAC	3 cut(s)	114, 168, 238
MnlI	CCTC	4 cut(s)	53, 174, 184, 254
Mox20I	TGGCCA	1 cut(s)	170
MscI	TGGCCA	1 cut(s)	170
MseI	TTAA	2 cut(s)	155, 249
MslI	CAYNNNNRTG	1 cut(s)	445
Msp20I	TGGCCA	1 cut(s)	170
MspA1I	CMGCKG	2 cut(s)	178, 327
MspI	CCGG	1 cut(s)	337
MwoI	GCNNNNNNNGC	2 cut(s)	172, 328
NdeII	GATC	1 cut(s)	402
NlaIII	CATG	8 cut(s)	31, 164, 200, 296, 396, 426, 439, 450
NlaIV	GGNNCC	1 cut(s)	84
NmuCI	GTSAC	1 cut(s)	215
NspI	RCATGY	1 cut(s)	200
PaeI	GCATGC	1 cut(s)	200
PagI	TCATGA	2 cut(s)	435, 446
PflMI	CCANNNNNTGG	1 cut(s)	166
PkrI	GCNGC	2 cut(s)	177, 202
PleI	GAGTC	1 cut(s)	137
PpsI	GAGTC	1 cut(s)	137
Psp1406I	AACGTT	1 cut(s)	16
PspN4I	GGNNCC	1 cut(s)	84
PspPI	GGNCC	2 cut(s)	329, 377
PvuII	CAGCTG	1 cut(s)	178
RseI	CAYNNNNRTG	1 cut(s)	445
SaqAI	TTAA	2 cut(s)	155, 249
SatI	GCNGC	2 cut(s)	176, 201
Sau3AI	GATC	1 cut(s)	402
Sau96I	GGNCC	2 cut(s)	329, 377
SchI	GAGTC	1 cut(s)	137
SduI	GDGCHC	1 cut(s)	11
SetI	ASST	5 cut(s)	19, 125, 180, 292, 445
SfaNI	GCATC	1 cut(s)	426
SinI	GGWCC	1 cut(s)	377
SmiMI	CAYNNNNRTG	1 cut(s)	445
SphI	GCATGC	1 cut(s)	200
Sse9I	AATT	2 cut(s)	151, 246
SsiI	CCGC	1 cut(s)	327
TaaI	ACNGT	1 cut(s)	209
TaiI	ACGT	3 cut(s)	19, 292, 445
TaqI	TCGA	1 cut(s)	405
TasI	AATT	2 cut(s)	151, 246
Tru1I	TTAA	2 cut(s)	155, 249
Tru9I	TTAA	2 cut(s)	155, 249
TseFI	GTSAC	1 cut(s)	215
TseI	GCWGC	2 cut(s)	175, 200
Tsp45I	GTSAC	1 cut(s)	215
TspDTI	ATGAA	3 cut(s)	44, 381, 435
Van91I	CCANNNNNTGG	1 cut(s)	166
VpaK11BI	GGWCC	1 cut(s)	377
XceI	RCATGY	1 cut(s)	200

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.