Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0017628

Physical Location & Seq

Genomic Coordinates Forward (+)

18877149 .. 18883197

Gene Structure 6049 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00097660.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1083 bp

ATGAAATTTTGTGGGGATGTTTATAAGGAAGATTTAGGAAGATCCGACCGTTGGATCTTCGTGATAATTTTGGAGGATGATCCTAAGGGCGATCGTGAGGATCCGACCGTTAGATCATCGTTTAATTTTGATCCGACCGTGACTGATGGTTTGAGATGGTGGACGATCGTGGATCGTATTTTGGGCTATGAAGACGCAGCGGGATTAGAGATCGATTCATTCGATCCCCAAAACCAGCAAAATAGACCCAAGCTCCACCGCAACTCGATCTTCGCTCTTTCGCCCCTCCCCCAAGCCACCGCAGAACGCATCGATTCATTCGATCCCCAAAACCAAGCAAAACAGACCCCCAAGCGACCGCAGCCCTTCGCTCTTCACCATCGCCCAAGCCATCGCAGCTCCACCGCAGCTCTTCGCTCGTCGCCCTCCCCAAGCCACCGCAACAGATCGATTCATTCGATCCCCAAAACCAGCAAAACGTACCGAAGCCACGCAGCTCTTCGCTCTTCGCCCCTCCCCAAGCCACCGCAGCTCTTCGCTCTTCGTACTCCCCCAAGCCACCGCAGCTCTTCGGCCTTCGATCGCCTTCCCTCAAGCCACCGCAGGTCTTTCGCTCTCCACCCTCCCCCAAGCCATCGCGTCTCGCCTCGTACTCCTCTCGCTCCGTGCCTCCGCCTCGAAACGGTTATTAGAGCTGGTCGACAAGTTGTGGTTTCTAATTGTGATATTGTTGTTGGTGATGTTCTACCCTTAAGACTGGTGATGAGGATTGCATTTTCCTTTGTCACTAAGGGTTTCTTTTATCGTGTAATCGGGGTTGGGAAATGTACCGAATCAGGAATTTTCGTGGCTAGCACGTATTCAAAAGACACCGAGAATAAAAACCCCTTGCAGGTGCTTTTAAAGGAGGTTGCTACTTTCATGGGTGCTGTCGGATTCATGGGTGCTGCCATTGTTGCATATGTTGTTTGGTTCAGAGACTTCTTTACTGGTGATAATTCAACTAGTGACCATGAAATTCAGAGGGAGTTTGTAGGAGAAGAAGGGAATCCAGATTCAAGCAGTGATAGAGCAATGGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005887 GO:0005911 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0008150 GO:0008324 GO:0009506 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0030054 GO:0031224 GO:0031226 GO:0034220 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0098655 GO:0098660 GO:0098662 GO:0099131 GO:0099132

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CaATP_NAI Cation_ATPase_C Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

360

Amino Acids

40.35

Weight (kDa)

9.51

Isoelectric Point (pI)

59.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017628)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g21811 FvH4_3g29731
rosa_multiflora	Rmu_sc0000902.1_g000006
rosa_roxburghii	Rroxscaffold_1G00049460 Rroxscaffold_2G00097660
rosa_rugosa	Rorug06G0116300 Rorug07G0021200 Rorug07G0021200 Rorug07G0021200 Rorug07G0021300 Rorug07G0021400
rosa_samantha	Rh7DG326200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	24
AarI	CACCTGC	1 cut(s)	883
Acc36I	ACCTGC	2 cut(s)	594, 883
AccI	GTMKAC	1 cut(s)	700
AccII	CGCG	1 cut(s)	639
AcsI	RAATTY	3 cut(s)	5, 840, 1017
AfaI	GTAC	4 cut(s)	482, 547, 652, 829
AfiI	CCNNNNNNNGG	3 cut(s)	51, 682, 892
AflII	CTTAAG	1 cut(s)	751
AgsI	TTSAA	3 cut(s)	864, 1002, 1059
AhlI	ACTAGT	1 cut(s)	1004
AluBI	AGCT	7 cut(s)	253, 399, 410, 497, 532, 567, 695
AluI	AGCT	7 cut(s)	253, 399, 410, 497, 532, 567, 695
Alw26I	GTCTC	2 cut(s)	646, 972
AoxI	GGCC	1 cut(s)	573
ApeKI	GCWGC	8 cut(s)	197, 361, 396, 407, 494, 529, 564, 947
ApoI	RAATTY	3 cut(s)	5, 840, 1017
ArsI	GACNNNNNNTTYG	2 cut(s)	133, 165
AsuHPI	GGTGA	4 cut(s)	368, 749, 772, 1004
AsuNHI	GCTAGC	1 cut(s)	851
AxyI	CCTNAGG	1 cut(s)	84
BamHI	GGATCC	1 cut(s)	100
BbsI	GAAGAC	1 cut(s)	198
BbvI	GCAGC	8 cut(s)	209, 373, 408, 419, 506, 541, 576, 934
BccI	CCATC	5 cut(s)	140, 150, 387, 399, 642
BcgI	CGANNNNNNTGC	2 cut(s)	592, 626
BcoDI	GTCTC	2 cut(s)	646, 972
BcuI	ACTAGT	1 cut(s)	1004
BfaI	CTAG	2 cut(s)	852, 1005
BfrI	CTTAAG	1 cut(s)	751
BfuAI	ACCTGC	2 cut(s)	594, 883
BisI	GCNGC	8 cut(s)	198, 362, 397, 408, 495, 530, 565, 948
BlsI	GCNGC	8 cut(s)	199, 363, 398, 409, 496, 531, 566, 949
BmiI	GGNNCC	1 cut(s)	102
BmsI	GCATC	1 cut(s)	318
BmtI	GCTAGC	1 cut(s)	855
BpiI	GAAGAC	1 cut(s)	198
BpuEI	CTTGAG	1 cut(s)	577
Bsa29I	ATCGAT	3 cut(s)	213, 312, 449
BsaAI	YACGTR	1 cut(s)	858
BsaXI	ACNNNNNCTCC	2 cut(s)	237, 267
Bsc4I	CCNNNNNNNGG	3 cut(s)	51, 682, 892
Bse1I	ACTGG	2 cut(s)	762, 994
Bse21I	CCTNAGG	1 cut(s)	84
Bse3DI	GCAATG	1 cut(s)	1080
BseCI	ATCGAT	3 cut(s)	213, 312, 449
BseGI	GGATG	2 cut(s)	22, 82
BseLI	CCNNNNNNNGG	3 cut(s)	51, 682, 892
BseMI	GCAATG	1 cut(s)	1080
BseNI	ACTGG	2 cut(s)	762, 994
BseRI	GAGGAG	1 cut(s)	645
BseXI	GCAGC	8 cut(s)	209, 373, 408, 419, 506, 541, 576, 934
Bsh1236I	CGCG	1 cut(s)	639
Bsh1285I	CGRYCG	7 cut(s)	49, 94, 108, 138, 168, 359, 583
BshFI	GGCC	1 cut(s)	575
BshVI	ATCGAT	3 cut(s)	213, 312, 449
BsiEI	CGRYCG	7 cut(s)	49, 94, 108, 138, 168, 359, 583
BslI	CCNNNNNNNGG	3 cut(s)	51, 682, 892
BsmAI	GTCTC	2 cut(s)	646, 972
BsmBI	CGTCTC	1 cut(s)	646
BsnI	GGCC	1 cut(s)	575
BspANI	GGCC	1 cut(s)	575
BspDI	ATCGAT	3 cut(s)	213, 312, 449
BspFNI	CGCG	1 cut(s)	639
BspLI	GGNNCC	1 cut(s)	102
BspMI	ACCTGC	2 cut(s)	594, 883
BspOI	GCTAGC	1 cut(s)	855
BspQI	GCTCTTC	7 cut(s)	378, 417, 504, 511, 539, 546, 574
BspTI	CTTAAG	1 cut(s)	751
BsrDI	GCAATG	1 cut(s)	1080
BsrI	ACTGG	2 cut(s)	762, 994
Bst4CI	ACNGT	4 cut(s)	50, 109, 139, 685
Bst6I	CTCTTC	7 cut(s)	378, 417, 504, 511, 539, 546, 574
BstAFI	CTTAAG	1 cut(s)	751
BstBAI	YACGTR	1 cut(s)	858
BstC8I	GCNNGC	1 cut(s)	853
BstDEI	CTNAG	2 cut(s)	84, 789
BstF5I	GGATG	2 cut(s)	22, 82
BstFNI	CGCG	1 cut(s)	639
BstMAI	GTCTC	2 cut(s)	646, 972
BstMCI	CGRYCG	7 cut(s)	49, 94, 108, 138, 168, 359, 583
BstMWI	GCNNNNNNNGC	5 cut(s)	361, 396, 529, 564, 956
BstUI	CGCG	1 cut(s)	639
BstV1I	GCAGC	8 cut(s)	209, 373, 408, 419, 506, 541, 576, 934
BstV2I	GAAGAC	1 cut(s)	198
BstX2I	RGATCY	3 cut(s)	41, 54, 100
BstYI	RGATCY	3 cut(s)	41, 54, 100
Bsu15I	ATCGAT	3 cut(s)	213, 312, 449
Bsu36I	CCTNAGG	1 cut(s)	84
BsuRI	GGCC	1 cut(s)	575
BsuTUI	ATCGAT	3 cut(s)	213, 312, 449
BtgZI	GCGATG	3 cut(s)	365, 377, 620
BtsCI	GGATG	2 cut(s)	22, 82
BtsI	GCAGTG	1 cut(s)	1069
BtsIMutI	CAGTG	1 cut(s)	1069
BveI	ACCTGC	2 cut(s)	594, 883
Cac8I	GCNNGC	1 cut(s)	853
ClaI	ATCGAT	3 cut(s)	213, 312, 449
CseI	GACGC	2 cut(s)	203, 628
Csp6I	GTAC	4 cut(s)	481, 546, 651, 828
CviAII	CATG	3 cut(s)	922, 940, 1013
CviQI	GTAC	4 cut(s)	481, 546, 651, 828
DdeI	CTNAG	2 cut(s)	84, 789
DraI	TTTAAA	1 cut(s)	903
Eam1104I	CTCTTC	7 cut(s)	378, 417, 504, 511, 539, 546, 574
EarI	CTCTTC	7 cut(s)	378, 417, 504, 511, 539, 546, 574
EciI	GGCGGA	1 cut(s)	662
Eco81I	CCTNAGG	1 cut(s)	84
Esp3I	CGTCTC	1 cut(s)	646
FaeI	CATG	3 cut(s)	925, 943, 1016
FaiI	YATR	7 cut(s)	24, 189, 923, 941, 961, 963, 1014
FalI	AAGNNNNNCTT	2 cut(s)	782, 814
FatI	CATG	3 cut(s)	921, 939, 1012
FauI	CCCGC	1 cut(s)	193
FauNDI	CATATG	1 cut(s)	961
FblI	GTMKAC	1 cut(s)	700
Fnu4HI	GCNGC	8 cut(s)	198, 362, 397, 408, 495, 530, 565, 948
FokI	GGATG	2 cut(s)	29, 89
Fsp4HI	GCNGC	8 cut(s)	198, 362, 397, 408, 495, 530, 565, 948
FspBI	CTAG	2 cut(s)	852, 1005
GluI	GCNGC	8 cut(s)	198, 362, 397, 408, 495, 530, 565, 948
HaeIII	GGCC	1 cut(s)	575
HgaI	GACGC	2 cut(s)	203, 628
Hin1II	CATG	3 cut(s)	925, 943, 1016
HincII	GTYRAC	1 cut(s)	701
HindII	GTYRAC	1 cut(s)	701
HinfI	GANTC	7 cut(s)	215, 314, 451, 833, 936, 1048, 1055
HphI	GGTGA	4 cut(s)	368, 749, 772, 1004
Hpy166II	GTNNAC	2 cut(s)	162, 701
Hpy188I	TCNGA	6 cut(s)	46, 105, 135, 935, 977, 1023
Hpy188III	TCNNGA	4 cut(s)	61, 95, 837, 1052
Hpy8I	GTNNAC	2 cut(s)	162, 701
Hpy99I	CGWCG	1 cut(s)	424
HpyAV	CCTTC	4 cut(s)	376, 586, 596, 1037
HpyCH4III	ACNGT	4 cut(s)	50, 109, 139, 685
HpyCH4IV	ACGT	2 cut(s)	479, 857
HpyCH4V	TGCA	3 cut(s)	773, 892, 959
HpyF10VI	GCNNNNNNNGC	5 cut(s)	361, 396, 529, 564, 956
HpyF3I	CTNAG	2 cut(s)	84, 789
HpySE526I	ACGT	2 cut(s)	479, 857
Hsp92II	CATG	3 cut(s)	925, 943, 1016
LguI	GCTCTTC	7 cut(s)	378, 417, 504, 511, 539, 546, 574
LmnI	GCTCC	3 cut(s)	258, 404, 667
LpnPI	CCDG	9 cut(s)	248, 484, 589, 681, 743, 822, 878, 975, 1065
Lsp1109I	GCAGC	8 cut(s)	209, 373, 408, 419, 506, 541, 576, 934
LweI	GCATC	1 cut(s)	318
MaeI	CTAG	2 cut(s)	852, 1005
MaeII	ACGT	2 cut(s)	479, 857
MaeIII	GTNAC	3 cut(s)	139, 784, 1007
MflI	RGATCY	3 cut(s)	41, 54, 100
MluCI	AATT	7 cut(s)	5, 66, 124, 718, 840, 997, 1017
MmeI	TCCRAC	5 cut(s)	32, 69, 128, 158, 913
MseI	TTAA	3 cut(s)	123, 752, 902
MspA1I	CMGCKG	1 cut(s)	200
MspCI	CTTAAG	1 cut(s)	751
MvnI	CGCG	1 cut(s)	639
MwoI	GCNNNNNNNGC	5 cut(s)	361, 396, 529, 564, 956
NdeI	CATATG	1 cut(s)	961
NheI	GCTAGC	1 cut(s)	851
NlaIII	CATG	3 cut(s)	925, 943, 1016
NlaIV	GGNNCC	1 cut(s)	102
NmuCI	GTSAC	3 cut(s)	139, 784, 1007
PaqCI	CACCTGC	1 cut(s)	883
PciSI	GCTCTTC	7 cut(s)	378, 417, 504, 511, 539, 546, 574
PcsI	WCGNNNNNNNCGW	3 cut(s)	219, 318, 455
PfeI	GAWTC	7 cut(s)	215, 314, 451, 833, 936, 1048, 1055
PkrI	GCNGC	8 cut(s)	199, 363, 398, 409, 496, 531, 566, 949
Ple19I	CGATCG	3 cut(s)	94, 168, 583
Ppu21I	YACGTR	1 cut(s)	858
PsiI	TTATAA	1 cut(s)	24
PspN4I	GGNNCC	1 cut(s)	102
PsuI	RGATCY	3 cut(s)	41, 54, 100
PvuI	CGATCG	3 cut(s)	94, 168, 583
RsaI	GTAC	4 cut(s)	482, 547, 652, 829
RsaNI	GTAC	4 cut(s)	481, 546, 651, 828
SalI	GTCGAC	1 cut(s)	699
SapI	GCTCTTC	7 cut(s)	378, 417, 504, 511, 539, 546, 574
SaqAI	TTAA	3 cut(s)	123, 752, 902
SatI	GCNGC	8 cut(s)	198, 362, 397, 408, 495, 530, 565, 948
SfaNI	GCATC	1 cut(s)	318
SmlI	CTYRAG	2 cut(s)	592, 751
SmoI	CTYRAG	2 cut(s)	592, 751
SpeI	ACTAGT	1 cut(s)	1004
Sse9I	AATT	7 cut(s)	5, 66, 124, 718, 840, 997, 1017
SspMI	CTAG	2 cut(s)	852, 1005
TaaI	ACNGT	4 cut(s)	50, 109, 139, 685
TaiI	ACGT	2 cut(s)	482, 860
TasI	AATT	7 cut(s)	5, 66, 124, 718, 840, 997, 1017
TfiI	GAWTC	7 cut(s)	215, 314, 451, 833, 936, 1048, 1055
Tru1I	TTAA	3 cut(s)	123, 752, 902
Tru9I	TTAA	3 cut(s)	123, 752, 902
TscAI	CASTG	1 cut(s)	1069
TseFI	GTSAC	3 cut(s)	139, 784, 1007
TseI	GCWGC	8 cut(s)	197, 361, 396, 407, 494, 529, 564, 947
Tsp45I	GTSAC	3 cut(s)	139, 784, 1007
TspDTI	ATGAA	8 cut(s)	17, 204, 207, 306, 443, 910, 928, 1029
TspGWI	ACGGA	1 cut(s)	654
TspRI	CASTG	1 cut(s)	1069
Vha464I	CTTAAG	1 cut(s)	751
XapI	RAATTY	3 cut(s)	5, 840, 1017
XmiI	GTMKAC	1 cut(s)	700
XspI	CTAG	2 cut(s)	852, 1005

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.