Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0017628

Physical Location & Seq

Genomic Coordinates Reverse (-)

69648768 .. 69652406

Gene Structure 3639 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00049460.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGAAATTTTGTGGGGATGTTTATAAGGAAGATTTAGGAAGATCCGACCGTTGGATCTTCGTGATAATTTTGGAGGATGATCCTAAGGGCGATCGTGAGGATCCAACAGTTAGATCATCGTTTAATTTCGATCCGACCGTGATTGATGGTTTGAGATGGTGGACGATCGTGGATCGTATTTTGGGCTGCTTTGAAGACGCAGCGGGATTAGAGTTAGGGAATGCAAATTTCATTTGGGTTTTGGGTATGGATGCTAAGCCTTGTTGCCAAGGTGGAGATGTGACAGTTTCGTTGAAGGCTAACCACACCTTGACTTGTGGTTCAGTTCCTGATTTTGGAGAAATTTTTACTAGCCCTAACTCAGTGTCCGCTGCAGCTTCAACCAAAGCTAGAATGCGTTGCACACAACTTCATGAGGCCTTTGTTGAACCTATCAACCAGCTTGGTGGTGGTGAAAGAGTCACTCCTAAGGGTATCTTAAACGTCATGATGGTTGAAGGCTTCACAATGTATCATGTAAAAAGCCATTTACAGGTTCATTCTTCTCATGTGTTCAGTCATCCACCAACAACTTTTTCATGGCCTGAAGACCTTGAACTTGCTCTTGAAGCCAAGAAGTTACAAGTTCAACATGGGAATAGCACTGTGAATGCCTTTTCAAGGGACTTGAAAGCTGCTAATCTTTTGATGGATGGAATGGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0010087 GO:0010088 GO:0010089 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_CC_LHEQLE Myb_DNA-binding

Protein Analysis

234

Amino Acids

25.91

Weight (kDa)

5.24

Isoelectric Point (pI)

29.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017628)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g21811 FvH4_3g29731
rosa_multiflora	Rmu_sc0000902.1_g000006
rosa_roxburghii	Rroxscaffold_1G00049460 Rroxscaffold_2G00097660
rosa_rugosa	Rorug06G0116300 Rorug07G0021200 Rorug07G0021200 Rorug07G0021200 Rorug07G0021300 Rorug07G0021400
rosa_samantha	Rh7DG326200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	24
AciI	CCGC	2 cut(s)	203, 369
AclWI	GGATC	7 cut(s)	36, 62, 74, 95, 108, 125, 180
AcsI	RAATTY	3 cut(s)	5, 226, 342
AcuI	CTGAAG	1 cut(s)	606
AfiI	CCNNNNNNNGG	4 cut(s)	51, 335, 532, 660
AjuI	GAANNNNNNNTTGG	2 cut(s)	559, 591
AluBI	AGCT	4 cut(s)	377, 389, 442, 674
AluI	AGCT	4 cut(s)	377, 389, 442, 674
AlwI	GGATC	7 cut(s)	36, 62, 74, 95, 108, 125, 180
AlwNI	CAGNNNCTG	1 cut(s)	329
AoxI	GGCC	2 cut(s)	417, 581
ApeKI	GCWGC	5 cut(s)	186, 200, 371, 374, 674
ApoI	RAATTY	3 cut(s)	5, 226, 342
AsuHPI	GGTGA	1 cut(s)	464
AxyI	CCTNAGG	2 cut(s)	84, 468
BamHI	GGATCC	1 cut(s)	100
BbsI	GAAGAC	2 cut(s)	201, 594
BbvI	GCAGC	5 cut(s)	173, 212, 358, 386, 661
BccI	CCATC	5 cut(s)	140, 150, 484, 682, 686
BfaI	CTAG	2 cut(s)	351, 390
BfmI	CTRYAG	1 cut(s)	372
BisI	GCNGC	5 cut(s)	187, 201, 372, 375, 675
BlpI	GCTNAGC	1 cut(s)	255
BlsI	GCNGC	5 cut(s)	188, 202, 373, 376, 676
BmiI	GGNNCC	1 cut(s)	102
BmsI	GCATC	1 cut(s)	241
BpiI	GAAGAC	2 cut(s)	201, 594
Bpu1102I	GCTNAGC	1 cut(s)	255
BsaJI	CCNNGG	1 cut(s)	268
Bsc4I	CCNNNNNNNGG	4 cut(s)	51, 335, 532, 660
Bse21I	CCTNAGG	2 cut(s)	84, 468
BseDI	CCNNGG	1 cut(s)	268
BseGI	GGATG	5 cut(s)	22, 82, 256, 559, 697
BseLI	CCNNNNNNNGG	4 cut(s)	51, 335, 532, 660
BseMII	CTCAG	1 cut(s)	375
BseXI	GCAGC	5 cut(s)	173, 212, 358, 386, 661
Bsh1285I	CGRYCG	4 cut(s)	49, 94, 138, 168
BshFI	GGCC	2 cut(s)	419, 583
BsiEI	CGRYCG	4 cut(s)	49, 94, 138, 168
BslFI	GGGAC	1 cut(s)	677
BslI	CCNNNNNNNGG	4 cut(s)	51, 335, 532, 660
BsmFI	GGGAC	1 cut(s)	677
BsmI	GAATGC	3 cut(s)	226, 399, 655
BsnI	GGCC	2 cut(s)	419, 583
Bsp143I	GATC	9 cut(s)	41, 54, 79, 91, 100, 113, 130, 165, 172
Bsp1720I	GCTNAGC	1 cut(s)	255
BspACI	CCGC	2 cut(s)	203, 369
BspANI	GGCC	2 cut(s)	419, 583
BspCNI	CTCAG	1 cut(s)	374
BspHI	TCATGA	2 cut(s)	412, 486
BspLI	GGNNCC	1 cut(s)	102
BspMAI	CTGCAG	1 cut(s)	376
BspPI	GGATC	7 cut(s)	36, 62, 74, 95, 108, 125, 180
BssECI	CCNNGG	1 cut(s)	268
BssMI	GATC	9 cut(s)	41, 54, 79, 91, 100, 113, 130, 165, 172
BssT1I	CCWWGG	1 cut(s)	268
Bst4CI	ACNGT	5 cut(s)	50, 109, 139, 286, 646
BstDEI	CTNAG	4 cut(s)	84, 255, 361, 468
BstENI	CCTNNNNNAGG	1 cut(s)	658
BstF5I	GGATG	5 cut(s)	22, 82, 256, 559, 697
BstKTI	GATC	9 cut(s)	44, 57, 82, 94, 103, 116, 133, 168, 175
BstMBI	GATC	9 cut(s)	41, 54, 79, 91, 100, 113, 130, 165, 172
BstMCI	CGRYCG	4 cut(s)	49, 94, 138, 168
BstMWI	GCNNNNNNNGC	1 cut(s)	608
BstSFI	CTRYAG	1 cut(s)	372
BstV1I	GCAGC	5 cut(s)	173, 212, 358, 386, 661
BstV2I	GAAGAC	2 cut(s)	201, 594
BstX2I	RGATCY	3 cut(s)	41, 54, 100
BstXI	CCANNNNNNTGG	1 cut(s)	446
BstYI	RGATCY	3 cut(s)	41, 54, 100
Bsu36I	CCTNAGG	2 cut(s)	84, 468
BsuRI	GGCC	2 cut(s)	419, 583
BtsCI	GGATG	5 cut(s)	22, 82, 256, 559, 697
BtsIMutI	CAGTG	2 cut(s)	369, 642
CaiI	CAGNNNCTG	1 cut(s)	329
CciI	TCATGA	2 cut(s)	412, 486
CseI	GACGC	1 cut(s)	206
CviAII	CATG	6 cut(s)	413, 487, 515, 548, 579, 632
DdeI	CTNAG	4 cut(s)	84, 255, 361, 468
DpnI	GATC	9 cut(s)	43, 56, 81, 93, 102, 115, 132, 167, 174
DpnII	GATC	9 cut(s)	41, 54, 79, 91, 100, 113, 130, 165, 172
Eco130I	CCWWGG	1 cut(s)	268
Eco147I	AGGCCT	1 cut(s)	419
Eco57I	CTGAAG	1 cut(s)	606
Eco81I	CCTNAGG	2 cut(s)	84, 468
EcoNI	CCTNNNNNAGG	1 cut(s)	658
EcoT14I	CCWWGG	1 cut(s)	268
ErhI	CCWWGG	1 cut(s)	268
FaeI	CATG	6 cut(s)	416, 490, 518, 551, 582, 635
FaiI	YATR	8 cut(s)	24, 248, 414, 488, 516, 549, 580, 633
FalI	AAGNNNNNCTT	2 cut(s)	461, 493
FaqI	GGGAC	1 cut(s)	677
FatI	CATG	6 cut(s)	412, 486, 514, 547, 578, 631
FauI	CCCGC	1 cut(s)	196
Fnu4HI	GCNGC	5 cut(s)	187, 201, 372, 375, 675
FokI	GGATG	4 cut(s)	29, 89, 263, 546
Fsp4HI	GCNGC	5 cut(s)	187, 201, 372, 375, 675
FspBI	CTAG	2 cut(s)	351, 390
GluI	GCNGC	5 cut(s)	187, 201, 372, 375, 675
HaeIII	GGCC	2 cut(s)	419, 583
HgaI	GACGC	1 cut(s)	206
Hin1II	CATG	6 cut(s)	416, 490, 518, 551, 582, 635
HinfI	GANTC	1 cut(s)	459
HphI	GGTGA	1 cut(s)	464
Hpy166II	GTNNAC	1 cut(s)	162
Hpy188I	TCNGA	2 cut(s)	46, 135
Hpy188III	TCNNGA	6 cut(s)	61, 95, 329, 413, 487, 605
Hpy8I	GTNNAC	1 cut(s)	162
HpyAV	CCTTC	2 cut(s)	289, 491
HpyCH4III	ACNGT	5 cut(s)	50, 109, 139, 286, 646
HpyCH4IV	ACGT	1 cut(s)	483
HpyCH4V	TGCA	3 cut(s)	224, 374, 402
HpyF10VI	GCNNNNNNNGC	1 cut(s)	608
HpyF3I	CTNAG	4 cut(s)	84, 255, 361, 468
HpySE526I	ACGT	1 cut(s)	483
Hsp92II	CATG	6 cut(s)	416, 490, 518, 551, 582, 635
Kzo9I	GATC	9 cut(s)	41, 54, 79, 91, 100, 113, 130, 165, 172
LpnPI	CCDG	4 cut(s)	342, 452, 518, 597
Lsp1109I	GCAGC	5 cut(s)	173, 212, 358, 386, 661
LweI	GCATC	1 cut(s)	241
MaeI	CTAG	2 cut(s)	351, 390
MaeII	ACGT	1 cut(s)	483
MaeIII	GTNAC	3 cut(s)	280, 460, 618
MalI	GATC	9 cut(s)	43, 56, 81, 93, 102, 115, 132, 167, 174
MboI	GATC	9 cut(s)	41, 54, 79, 91, 100, 113, 130, 165, 172
MboII	GAAGA	6 cut(s)	41, 49, 51, 206, 534, 599
MflI	RGATCY	3 cut(s)	41, 54, 100
MluCI	AATT	5 cut(s)	5, 66, 124, 226, 342
MlyI	GAGTC	1 cut(s)	468
MmeI	TCCRAC	4 cut(s)	32, 69, 128, 158
MnlI	CCTC	3 cut(s)	67, 91, 409
MseI	TTAA	2 cut(s)	123, 479
MspA1I	CMGCKG	2 cut(s)	203, 371
Mva1269I	GAATGC	3 cut(s)	226, 399, 655
MwoI	GCNNNNNNNGC	1 cut(s)	608
NdeII	GATC	9 cut(s)	41, 54, 79, 91, 100, 113, 130, 165, 172
NlaIII	CATG	6 cut(s)	416, 490, 518, 551, 582, 635
NlaIV	GGNNCC	1 cut(s)	102
NmuCI	GTSAC	2 cut(s)	280, 460
PagI	TCATGA	2 cut(s)	412, 486
PceI	AGGCCT	1 cut(s)	419
PcsI	WCGNNNNNNNCGW	1 cut(s)	135
PctI	GAATGC	3 cut(s)	226, 399, 655
PkrI	GCNGC	5 cut(s)	188, 202, 373, 376, 676
Ple19I	CGATCG	2 cut(s)	94, 168
PleI	GAGTC	1 cut(s)	467
PpsI	GAGTC	1 cut(s)	467
PsiI	TTATAA	1 cut(s)	24
PspN4I	GGNNCC	1 cut(s)	102
PstI	CTGCAG	1 cut(s)	376
PstNI	CAGNNNCTG	1 cut(s)	329
PsuI	RGATCY	3 cut(s)	41, 54, 100
PvuI	CGATCG	2 cut(s)	94, 168
SaqAI	TTAA	2 cut(s)	123, 479
SatI	GCNGC	5 cut(s)	187, 201, 372, 375, 675
Sau3AI	GATC	9 cut(s)	41, 54, 79, 91, 100, 113, 130, 165, 172
SchI	GAGTC	1 cut(s)	468
SfaNI	GCATC	1 cut(s)	241
SfcI	CTRYAG	1 cut(s)	372
Sse9I	AATT	5 cut(s)	5, 66, 124, 226, 342
SseBI	AGGCCT	1 cut(s)	419
SsiI	CCGC	2 cut(s)	203, 369
SspMI	CTAG	2 cut(s)	351, 390
StuI	AGGCCT	1 cut(s)	419
StyI	CCWWGG	1 cut(s)	268
TaaI	ACNGT	5 cut(s)	50, 109, 139, 286, 646
TaiI	ACGT	1 cut(s)	486
TaqI	TCGA	1 cut(s)	129
TasI	AATT	5 cut(s)	5, 66, 124, 226, 342
Tru1I	TTAA	2 cut(s)	123, 479
Tru9I	TTAA	2 cut(s)	123, 479
TscAI	CASTG	2 cut(s)	369, 649
TseFI	GTSAC	2 cut(s)	280, 460
TseI	GCWGC	5 cut(s)	186, 200, 371, 374, 674
Tsp45I	GTSAC	2 cut(s)	280, 460
TspDTI	ATGAA	5 cut(s)	17, 220, 401, 527, 567
TspRI	CASTG	2 cut(s)	369, 649
XagI	CCTNNNNNAGG	1 cut(s)	658
XapI	RAATTY	3 cut(s)	5, 226, 342
XcmI	CCANNNNNNNNNTGG	1 cut(s)	446
XspI	CTAG	2 cut(s)	351, 390

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.