FvH4_3g21811

MULE transposase domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0017628
Physical Location & Seq
Forward (+)
14869682 .. 14874817
5136 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g21811.t1

Sequence Viewer

Length: 1407 bp
ATGGTGAAGGCTATGAGGGGTGTTCTAGGGATCTCGGGGTACTATCGCCGCTTTGTGAAAAATTTCAGCATCCTCGCCAAATCGCTCACTGACATGCTCAAGGTTAACAGCATGCATACTGTACTGTTTGGTATACCATTCGGTATAGCCTGCCTGCTGATGAGGTATGCCACGCGCAAGGCACGTGAAGAAAAGTTGGAAGGCTCAAGAAAACCCTTTGCTCATCGTCATTGCCTAGAAGTCGCCGTCAAATCCAGCGAAGTCATCCTCCAGATCACCAAGAAGAAGCCCGCAAGAAGGTCATCGGCATTGAGATTGACGCACGGTCGTACAGTCCTTGAACTTCAGCCACGATTCCAGGTTTCTGCCCTAAATGAGGCAGTTATGGGCAGCGTCAAGTCTATGTTCAAAGCTTGGGAGGAATCGTTGAATACATCTGGGAAGAAGGATTGGAGGATAATATTCATTAAGGAGAGTGATATTCCCATGAATGAAAGTGTTGAAGATCAAAATGAGCAGTCTGAAAGAGTTGATGCACCATTACAACACTACAATGGGAAACCATATAGAAGGTTGCTTCAAGATGACCTTGTAGGGAAGTTTTTTGAAACATTGGAAGCTGCAGAAAAGTTCTTTTATGATTATGCTCATGCTATTGGTTTCAGTCTTCGTAAGTTGGAGGAGGATGCATCAAAAATCTATACTGACAATGTGTTTTTTGTGGTCCGGAAAGAGATAGAGAGGGTGTGCGGACTCATCACAGAAGCTGTTGTGCAATCCAATGGATTTAAAACGTATGTCATGTGGAGACACAACAAAGTGGATCAGAGGTTCAATGTGGTGTACTTTCAAAGGGAAAGTGGCACACCATTTGTGTGTTCTCGTCAAAAGATGGAGTATGAGGGCATACCATGTTGTCACATCTTCAATGTCTTGAAACACGAGAGTGTCACCAAGATTCTTTCTTCTTTGGTTATGAAACGTTGGACAATCAGTGAAAAATGTAACATTGAAATTTTGGATACATGTGGGCTCACTACTAATGTTATAGAAGATGGGGAATCAAAGTCAAGATTTGGTTACATAAGTGACATGTTAAGCAAACTGTTATTTCGTGCCTCTTCTTCAAAGGAAATATATGAGATGGTAAGTGAAGAAGTTGATAAATTGGAGAAGAAGCTAGAAGCTGTGTCTATTGTTCCAAAAGTTAGAAGGATGACGGACGTGGACATCATGAGAACCTTATTAGAGACCCAAATGTTGCATAACAAACAAAGATGTGGAAAGAATCAATCATCGGGTCCTTGTGTTGAGACAACCTCAATGTCGTCAGAGGATGAAATTGATGGTGAAGATAGAGGTGAAGAAGCACTTCAGATTCATATAAAGCGCTTCAAGGACGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

469

Amino Acids

53.94

Weight (kDa)

8.8

Isoelectric Point (pI)

49.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 133
AccII CGCG 1 cut(s) 175
AccIII TCCGGA 1 cut(s) 726
AciI CCGC 3 cut(s) 49, 291, 750
AclI AACGTT 1 cut(s) 982
AclWI GGATC 2 cut(s) 38, 831
AcsI RAATTY 2 cut(s) 61, 1014
AcuI CTGAAG 2 cut(s) 329, 1358
AcvI CACGTG 1 cut(s) 185
AfaI GTAC 4 cut(s) 41, 123, 331, 845
AfeI AGCGCT 1 cut(s) 1391
AfiI CCNNNNNNNGG 2 cut(s) 297, 376
AflIII ACRYGT 2 cut(s) 1025, 1092
AhdI GACNNNNNGTC 1 cut(s) 324
AjiI CACGTC 1 cut(s) 1225
AjnI CCWGG 1 cut(s) 357
AleI CACNNNNGTG 1 cut(s) 945
AloI GAACNNNNNNTCC 2 cut(s) 815, 847
AluBI AGCT 5 cut(s) 413, 620, 767, 1180, 1187
AluI AGCT 5 cut(s) 413, 620, 767, 1180, 1187
Alw26I GTCTC 3 cut(s) 802, 1244, 1307
AlwI GGATC 2 cut(s) 38, 831
AlwNI CAGNNNCTG 1 cut(s) 767
Ama87I CYCGRG 1 cut(s) 34
Aor13HI TCCGGA 1 cut(s) 726
Aor51HI AGCGCT 1 cut(s) 1391
ApeKI GCWGC 2 cut(s) 390, 620
ApoI RAATTY 2 cut(s) 61, 1014
Asp700I GAANNNNTTC 2 cut(s) 62, 1371
AspLEI GCGC 2 cut(s) 177, 1392
AspS9I GGNCC 2 cut(s) 724, 1301
AsuHPI GGTGA 5 cut(s) 16, 268, 943, 1361, 1373
AvaI CYCGRG 1 cut(s) 34
AvaII GGWCC 2 cut(s) 724, 1301
BanII GRGCYC 1 cut(s) 1035
BauI CACGAG 1 cut(s) 941
BbrPI CACGTG 1 cut(s) 185
BbsI GAAGAC 1 cut(s) 659
BbvI GCAGC 2 cut(s) 402, 607
BccI CCATC 4 cut(s) 886, 1049, 1138, 1340
BceAI ACGGC 1 cut(s) 230
BciT130I CCWGG 1 cut(s) 359
BciVI GTATCC 1 cut(s) 1015
BcoDI GTCTC 3 cut(s) 802, 1244, 1307
BfaI CTAG 3 cut(s) 26, 236, 1181
BfmI CTRYAG 1 cut(s) 621
BfoI RGCGCY 1 cut(s) 1393
BfuI GTATCC 1 cut(s) 1015
BisI GCNGC 3 cut(s) 49, 391, 621
BlsI GCNGC 3 cut(s) 50, 392, 622
Bme1390I CCNGG 1 cut(s) 359
Bme18I GGWCC 2 cut(s) 724, 1301
BmeRI GACNNNNNGTC 1 cut(s) 324
BmeT110I CYCGRG 1 cut(s) 34
BmgBI CACGTC 1 cut(s) 1225
BmgT120I GGNCC 2 cut(s) 724, 1301
BmiI GGNNCC 1 cut(s) 1302
BmrFI CCNGG 1 cut(s) 359
BmsI GCATC 4 cut(s) 78, 523, 676, 698
BpiI GAAGAC 1 cut(s) 659
BplI GAGNNNNNCTC 2 cut(s) 1304, 1336
BpmI CTGGAG 1 cut(s) 254
BpuEI CTTGAG 2 cut(s) 83, 190
BsaAI YACGTR 1 cut(s) 185
BsaI GGTCTC 1 cut(s) 1244
BsaWI WCCGGW 1 cut(s) 726
BsaXI ACNNNNNCTCC 2 cut(s) 410, 440
Bsc4I CCNNNNNNNGG 2 cut(s) 297, 376
Bse3DI GCAATG 1 cut(s) 229
BseAI TCCGGA 1 cut(s) 726
BseBI CCWGG 1 cut(s) 359
BseGI GGATG 5 cut(s) 69, 264, 691, 1221, 1342
BseLI CCNNNNNNNGG 2 cut(s) 297, 376
BseMI GCAATG 1 cut(s) 229
BseRI GAGGAG 1 cut(s) 695
BseXI GCAGC 2 cut(s) 402, 607
Bsh1236I CGCG 1 cut(s) 175
Bsh1285I CGRYCG 1 cut(s) 328
BsiEI CGRYCG 1 cut(s) 328
BsiHKCI CYCGRG 1 cut(s) 34
BsiSI CCGG 1 cut(s) 727
BslI CCNNNNNNNGG 2 cut(s) 297, 376
BsmAI GTCTC 3 cut(s) 802, 1244, 1307
Bso31I GGTCTC 1 cut(s) 1244
BsoBI CYCGRG 1 cut(s) 34
Bsp1286I GDGCHC 1 cut(s) 1035
Bsp13I TCCGGA 1 cut(s) 726
Bsp143I GATC 4 cut(s) 30, 273, 505, 823
BspACI CCGC 3 cut(s) 49, 291, 750
BspEI TCCGGA 1 cut(s) 726
BspFNI CGCG 1 cut(s) 175
BspHI TCATGA 1 cut(s) 1233
BspLI GGNNCC 1 cut(s) 1302
BspMAI CTGCAG 1 cut(s) 625
BspPI GGATC 2 cut(s) 38, 831
BspTNI GGTCTC 1 cut(s) 1244
BsrDI GCAATG 1 cut(s) 229
BssMI GATC 4 cut(s) 30, 273, 505, 823
BssNAI GTATAC 1 cut(s) 134
BssSI CACGAG 1 cut(s) 941
Bst1107I GTATAC 1 cut(s) 134
Bst2BI CACGAG 1 cut(s) 941
Bst2UI CCWGG 1 cut(s) 359
Bst4CI ACNGT 5 cut(s) 121, 126, 326, 334, 1107
Bst6I CTCTTC 1 cut(s) 1126
BstBAI YACGTR 1 cut(s) 185
BstC8I GCNNGC 4 cut(s) 113, 151, 155, 291
BstENI CCTNNNNNAGG 1 cut(s) 374
BstF5I GGATG 5 cut(s) 69, 264, 691, 1221, 1342
BstFNI CGCG 1 cut(s) 175
BstH2I RGCGCY 1 cut(s) 1393
BstHHI GCGC 2 cut(s) 177, 1392
BstKTI GATC 4 cut(s) 33, 276, 508, 826
BstMAI GTCTC 3 cut(s) 802, 1244, 1307
BstMBI GATC 4 cut(s) 30, 273, 505, 823
BstMCI CGRYCG 1 cut(s) 328
BstNI CCWGG 1 cut(s) 359
BstNSI RCATGY 4 cut(s) 97, 115, 1029, 1096
BstSCI CCNGG 1 cut(s) 357
BstSFI CTRYAG 1 cut(s) 621
BstUI CGCG 1 cut(s) 175
BstV1I GCAGC 2 cut(s) 402, 607
BstV2I GAAGAC 1 cut(s) 659
BstX2I RGATCY 1 cut(s) 30
BstYI RGATCY 1 cut(s) 30
BstZ17I GTATAC 1 cut(s) 134
BsuI GTATCC 1 cut(s) 1015
BtrI CACGTC 1 cut(s) 1225
BtsCI GGATG 5 cut(s) 69, 264, 691, 1221, 1342
BtsIMutI CAGTG 2 cut(s) 87, 1000
Cac8I GCNNGC 4 cut(s) 113, 151, 155, 291
CaiI CAGNNNCTG 1 cut(s) 767
CciI TCATGA 1 cut(s) 1233
CfoI GCGC 2 cut(s) 177, 1392
Cfr13I GGNCC 2 cut(s) 724, 1301
CseI GACGC 2 cut(s) 328, 382
Csp6I GTAC 4 cut(s) 40, 122, 330, 844
CviAII CATG 9 cut(s) 94, 112, 487, 650, 802, 912, 1026, 1093, 1234
CviQI GTAC 4 cut(s) 40, 122, 330, 844
DpnI GATC 4 cut(s) 32, 275, 507, 825
DpnII GATC 4 cut(s) 30, 273, 505, 823
DraI TTTAAA 1 cut(s) 790
DriI GACNNNNNGTC 1 cut(s) 324
Eam1104I CTCTTC 1 cut(s) 1126
Eam1105I GACNNNNNGTC 1 cut(s) 324
EarI CTCTTC 1 cut(s) 1126
Eco24I GRGCYC 1 cut(s) 1035
Eco31I GGTCTC 1 cut(s) 1244
Eco47I GGWCC 2 cut(s) 724, 1301
Eco47III AGCGCT 1 cut(s) 1391
Eco57I CTGAAG 2 cut(s) 329, 1358
Eco72I CACGTG 1 cut(s) 185
Eco88I CYCGRG 1 cut(s) 34
EcoNI CCTNNNNNAGG 1 cut(s) 374
EcoO109I RGGNCCY 1 cut(s) 1301
EcoRII CCWGG 1 cut(s) 357
EcoT22I ATGCAT 2 cut(s) 117, 691
EcoT38I GRGCYC 1 cut(s) 1035
FaeI CATG 9 cut(s) 97, 115, 490, 653, 805, 915, 1029, 1096, 1237
FalI AAGNNNNNCTT 4 cut(s) 573, 605, 1356, 1388
FatI CATG 9 cut(s) 93, 111, 486, 649, 801, 911, 1025, 1092, 1233
FauI CCCGC 1 cut(s) 298
FblI GTMKAC 1 cut(s) 133
Fnu4HI GCNGC 3 cut(s) 49, 391, 621
FokI GGATG 5 cut(s) 56, 251, 698, 1228, 1349
FriOI GRGCYC 1 cut(s) 1035
Fsp4HI GCNGC 3 cut(s) 49, 391, 621
FspBI CTAG 3 cut(s) 26, 236, 1181
GlaI GCGC 2 cut(s) 176, 1391
GluI GCNGC 3 cut(s) 49, 391, 621
GsuI CTGGAG 1 cut(s) 254
HaeII RGCGCY 1 cut(s) 1393
HapII CCGG 1 cut(s) 727
HgaI GACGC 2 cut(s) 328, 382
HhaI GCGC 2 cut(s) 177, 1392
Hin1II CATG 9 cut(s) 97, 115, 490, 653, 805, 915, 1029, 1096, 1237
Hin6I GCGC 2 cut(s) 175, 1390
HinP1I GCGC 2 cut(s) 175, 1390
HincII GTYRAC 1 cut(s) 106
HindII GTYRAC 1 cut(s) 106
HindIII AAGCTT 1 cut(s) 411
HinfI GANTC 7 cut(s) 354, 422, 753, 958, 1061, 1288, 1378
HpaI GTTAAC 1 cut(s) 106
HpaII CCGG 1 cut(s) 727
HphI GGTGA 5 cut(s) 16, 268, 943, 1361, 1373
Hpy166II GTNNAC 4 cut(s) 106, 134, 844, 1228
Hpy188I TCNGA 4 cut(s) 523, 828, 1333, 1377
Hpy188III TCNNGA 7 cut(s) 207, 271, 581, 727, 934, 1071, 1234
Hpy8I GTNNAC 4 cut(s) 106, 134, 844, 1228
HpyAV CCTTC 5 cut(s) 194, 291, 439, 564, 1206
HpyCH4III ACNGT 5 cut(s) 121, 126, 326, 334, 1107
HpyCH4IV ACGT 4 cut(s) 184, 794, 982, 1224
HpyCH4V TGCA 6 cut(s) 115, 536, 623, 689, 775, 1264
HpySE526I ACGT 4 cut(s) 184, 794, 982, 1224
Hsp92II CATG 9 cut(s) 97, 115, 490, 653, 805, 915, 1029, 1096, 1237
HspAI GCGC 2 cut(s) 175, 1390
Kpn2I TCCGGA 1 cut(s) 726
KspAI GTTAAC 1 cut(s) 106
Kzo9I GATC 4 cut(s) 30, 273, 505, 823
LpnPI CCDG 8 cut(s) 163, 167, 268, 284, 344, 371, 423, 740
Lsp1109I GCAGC 2 cut(s) 402, 607
LweI GCATC 4 cut(s) 78, 523, 676, 698
MaeI CTAG 3 cut(s) 26, 236, 1181
MaeII ACGT 4 cut(s) 184, 794, 982, 1224
MaeIII GTNAC 5 cut(s) 917, 949, 1004, 1079, 1088
MalI GATC 4 cut(s) 32, 275, 507, 825
MboI GATC 4 cut(s) 30, 273, 505, 823
MflI RGATCY 1 cut(s) 30
MhlI GDGCHC 1 cut(s) 1035
MluCI AATT 4 cut(s) 61, 1014, 1166, 1341
MlyI GAGTC 1 cut(s) 747
MmeI TCCRAC 3 cut(s) 177, 657, 965
Mph1103I ATGCAT 2 cut(s) 117, 691
MroI TCCGGA 1 cut(s) 726
MroXI GAANNNNTTC 2 cut(s) 62, 1371
MseI TTAA 4 cut(s) 105, 468, 789, 1097
MslI CAYNNNNRTG 4 cut(s) 92, 552, 874, 945
MspI CCGG 1 cut(s) 727
MspR9I CCNGG 1 cut(s) 359
MvaI CCWGG 1 cut(s) 359
MvnI CGCG 1 cut(s) 175
NdeII GATC 4 cut(s) 30, 273, 505, 823
NlaIII CATG 9 cut(s) 97, 115, 490, 653, 805, 915, 1029, 1096, 1237
NlaIV GGNNCC 1 cut(s) 1302
NmuCI GTSAC 3 cut(s) 917, 949, 1088
NsiI ATGCAT 2 cut(s) 117, 691
NspI RCATGY 4 cut(s) 97, 115, 1029, 1096
OliI CACNNNNGTG 1 cut(s) 945
PaeI GCATGC 1 cut(s) 115
PagI TCATGA 1 cut(s) 1233
PciI ACATGT 2 cut(s) 1025, 1092
PdmI GAANNNNTTC 2 cut(s) 62, 1371
PfeI GAWTC 6 cut(s) 354, 422, 958, 1061, 1288, 1378
PkrI GCNGC 3 cut(s) 50, 392, 622
PleI GAGTC 1 cut(s) 747
PmaCI CACGTG 1 cut(s) 185
PmlI CACGTG 1 cut(s) 185
PpsI GAGTC 1 cut(s) 747
Ppu21I YACGTR 1 cut(s) 185
PpuMI RGGWCCY 1 cut(s) 1301
PscI ACATGT 2 cut(s) 1025, 1092
Psp1406I AACGTT 1 cut(s) 982
Psp5II RGGWCCY 1 cut(s) 1301
Psp6I CCWGG 1 cut(s) 357
PspCI CACGTG 1 cut(s) 185
PspGI CCWGG 1 cut(s) 357
PspN4I GGNNCC 1 cut(s) 1302
PspPI GGNCC 2 cut(s) 724, 1301
PspPPI RGGWCCY 1 cut(s) 1301
PstI CTGCAG 1 cut(s) 625
PstNI CAGNNNCTG 1 cut(s) 767
PsuI RGATCY 1 cut(s) 30
RsaI GTAC 4 cut(s) 41, 123, 331, 845
RsaNI GTAC 4 cut(s) 40, 122, 330, 844
RseI CAYNNNNRTG 4 cut(s) 92, 552, 874, 945
SaqAI TTAA 4 cut(s) 105, 468, 789, 1097
SatI GCNGC 3 cut(s) 49, 391, 621
Sau3AI GATC 4 cut(s) 30, 273, 505, 823
Sau96I GGNCC 2 cut(s) 724, 1301
SchI GAGTC 1 cut(s) 747
ScrFI CCNGG 1 cut(s) 359
SduI GDGCHC 1 cut(s) 1035
SfaNI GCATC 4 cut(s) 78, 523, 676, 698
SfcI CTRYAG 1 cut(s) 621
SinI GGWCC 2 cut(s) 724, 1301
SmiMI CAYNNNNRTG 4 cut(s) 92, 552, 874, 945
SmlI CTYRAG 2 cut(s) 98, 205
SmoI CTYRAG 2 cut(s) 98, 205
SphI GCATGC 1 cut(s) 115
Sse9I AATT 4 cut(s) 61, 1014, 1166, 1341
SsiI CCGC 3 cut(s) 49, 291, 750
SspI AATATT 1 cut(s) 462
SspMI CTAG 3 cut(s) 26, 236, 1181
StyD4I CCNGG 1 cut(s) 357
TaaI ACNGT 5 cut(s) 121, 126, 326, 334, 1107
TaiI ACGT 4 cut(s) 187, 797, 985, 1227
TasI AATT 4 cut(s) 61, 1014, 1166, 1341
TatI WGTACW 2 cut(s) 121, 843
TauI GCSGC 1 cut(s) 51
TfiI GAWTC 6 cut(s) 354, 422, 958, 1061, 1288, 1378
Tru1I TTAA 4 cut(s) 105, 468, 789, 1097
Tru9I TTAA 4 cut(s) 105, 468, 789, 1097
TscAI CASTG 2 cut(s) 94, 1000
TseFI GTSAC 3 cut(s) 917, 949, 1088
TseI GCWGC 2 cut(s) 390, 620
Tsp45I GTSAC 3 cut(s) 917, 949, 1088
TspDTI ATGAA 6 cut(s) 454, 503, 507, 992, 1353, 1370
TspGWI ACGGA 1 cut(s) 1235
TspRI CASTG 2 cut(s) 94, 1000
VpaK11BI GGWCC 2 cut(s) 724, 1301
XagI CCTNNNNNAGG 1 cut(s) 374
XapI RAATTY 2 cut(s) 61, 1014
XceI RCATGY 4 cut(s) 97, 115, 1029, 1096
XmiI GTMKAC 1 cut(s) 133
XmnI GAANNNNTTC 2 cut(s) 62, 1371
XspI CTAG 3 cut(s) 26, 236, 1181
Zsp2I ATGCAT 2 cut(s) 117, 691
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.