FvH4_3g29731

MULE transposase domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0017628
Physical Location & Seq
Reverse (-)
22784827 .. 22787262
2436 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g29731.t1

Sequence Viewer

Length: 1155 bp
ATGGACAGTGATCTTCCCATGAATGAAAGTGAACAGTCTGAGGTTAATGCACCATCACAACAGTACGATGGGAAACCATTTACTGCTTTGTGTAGAGATGACCTTGTTGGGAAGTATTTTGAAACATTGGAAGCTGCAGAAAAATTTTACTATGATTATGCTCATGTTGTTGGTTTTAGTGTGAGAAAGGACATAAAGCGACGGGGAAAAGACATAGACGTACAAATCCGCCAATGGTATTCAAAGCATGAAATGAAAACACAGCTTTATATGTTGGAGAATGATGCATCAAAGATCTACACCGACAATGTGTTTTATGTAGTCCGGAAAGAGATAGAGAGGGTGGGTGGACTCATCACCGAAGCTGCTGTGCAATCCGATGGATTTAAGACATATATCATGTGGAGACACAGTAGAGTGGATCGAAGGTTCAGTGTGGTGTACTTTCAAGGGGAAGGTGACCCACGGTTTGTGTGTTCTTGCCAAAAGATGGAGTACGAGGGCATACCATGTTGTCACATCTTCAATGTTTTGAAACATGAGAGCATTTCGAAGATTCCTATTTCTTTGAAAATGAAACGATGGATGATTGTTGAAAAGTCGGACGCTGAAAAGTTGGATGCACATATGGTCACTAATGTTACAGAAGATGGGGAATCAAAGTCAAGATTTGGTTATATAAGTGACAGGTTAAGCAAACTGTCATTTCATGCCTCTTCTTCGAAGGAACTATACGATATGGTAAACGAAGAAGTTGATAAACTGGAGAAAAAGCTAGAAGCTGTGTCTATTGTTCCAGAAGTTAGAAGGCAGGAAGGTGGATGTGGACGTCATGAGAACCTTATTAGAGACCCGAATGTTGTAAAAACCAAAGGGAAGAAAAAAGAACAAAGAAAGACTACAGGGAAACAAGACAGAAAGTGCAAGGATGAAATTGATGGTGAAGGTAACATCCCACAAGCCAATGAAGTTGGCCTTTCAAGCAGAATCCCATACCAGCATCAAGTTCAACAGGTTCCCTTTCCTCCAGGATACCAATACCAAGGTTTTCCAGGAATGCAAAATTTCCCAACCAACATGTACTTCAATGGAATGCAAAATCTCCCAAGTGGTCATCCACAGATGTATGGACCAAGTTTGTTCGATCCAAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

385

Amino Acids

44.42

Weight (kDa)

7.13

Isoelectric Point (pI)

44.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 832
AccB7I CCANNNNNTGG 1 cut(s) 490
AccIII TCCGGA 1 cut(s) 324
AciI CCGC 1 cut(s) 229
AclWI GGATC 2 cut(s) 429, 1139
AcsI RAATTY 2 cut(s) 143, 1063
AcyI GRCGYC 1 cut(s) 829
AfaI GTAC 5 cut(s) 65, 222, 443, 497, 1082
AfiI CCNNNNNNNGG 1 cut(s) 490
AflIII ACRYGT 1 cut(s) 1077
AjnI CCWGG 2 cut(s) 1027, 1051
AjuI GAANNNNNNNTTGG 2 cut(s) 1067, 1099
AloI GAACNNNNNNTCC 2 cut(s) 413, 445
AluBI AGCT 5 cut(s) 134, 265, 365, 775, 782
AluI AGCT 5 cut(s) 134, 265, 365, 775, 782
Alw26I GTCTC 2 cut(s) 400, 843
AlwI GGATC 2 cut(s) 429, 1139
Aor13HI TCCGGA 1 cut(s) 324
AoxI GGCC 1 cut(s) 973
ApeKI GCWGC 2 cut(s) 134, 365
ApoI RAATTY 2 cut(s) 143, 1063
ArsI GACNNNNNNTTYG 2 cut(s) 452, 484
AspS9I GGNCC 1 cut(s) 1130
AsuHPI GGTGA 3 cut(s) 349, 470, 953
AsuII TTCGAA 2 cut(s) 551, 722
AvaII GGWCC 1 cut(s) 1130
BarI GAAGNNNNNNTAC 2 cut(s) 716, 748
BbvI GCAGC 2 cut(s) 121, 352
BccI CCATC 7 cut(s) 61, 62, 374, 484, 576, 644, 932
BciT130I CCWGG 2 cut(s) 1029, 1053
BciVI GTATCC 1 cut(s) 1025
BcoDI GTCTC 2 cut(s) 400, 843
BfaI CTAG 1 cut(s) 776
BfmI CTRYAG 2 cut(s) 135, 900
BfuI GTATCC 1 cut(s) 1025
BglII AGATCT 1 cut(s) 294
BisI GCNGC 2 cut(s) 135, 366
BlsI GCNGC 2 cut(s) 136, 367
Bme1390I CCNGG 2 cut(s) 1029, 1053
Bme18I GGWCC 1 cut(s) 1130
BmgT120I GGNCC 1 cut(s) 1130
BmiI GGNNCC 1 cut(s) 1017
BmrFI CCNGG 2 cut(s) 1029, 1053
BmsI GCATC 4 cut(s) 274, 296, 610, 1009
BpmI CTGGAG 2 cut(s) 785, 1011
Bpu14I TTCGAA 2 cut(s) 551, 722
BsaHI GRCGYC 1 cut(s) 829
BsaI GGTCTC 1 cut(s) 843
BsaJI CCNNGG 3 cut(s) 464, 1042, 1148
BsaWI WCCGGW 1 cut(s) 324
BsaXI ACNNNNNCTCC 2 cut(s) 397, 427
Bsc4I CCNNNNNNNGG 1 cut(s) 490
Bse1I ACTGG 1 cut(s) 768
BseAI TCCGGA 1 cut(s) 324
BseBI CCWGG 2 cut(s) 1029, 1053
BseDI CCNNGG 3 cut(s) 464, 1042, 1148
BseGI GGATG 6 cut(s) 591, 625, 827, 934, 951, 1114
BseLI CCNNNNNNNGG 1 cut(s) 490
BseMII CTCAG 1 cut(s) 30
BseNI ACTGG 1 cut(s) 768
BseXI GCAGC 2 cut(s) 121, 352
BshFI GGCC 1 cut(s) 975
BsiSI CCGG 1 cut(s) 325
BslI CCNNNNNNNGG 1 cut(s) 490
BsmAI GTCTC 2 cut(s) 400, 843
BsmI GAATGC 2 cut(s) 1062, 1098
BsnI GGCC 1 cut(s) 975
Bso31I GGTCTC 1 cut(s) 843
Bsp119I TTCGAA 2 cut(s) 551, 722
Bsp13I TCCGGA 1 cut(s) 324
Bsp143I GATC 4 cut(s) 10, 294, 421, 1144
BspACI CCGC 1 cut(s) 229
BspANI GGCC 1 cut(s) 975
BspCNI CTCAG 1 cut(s) 31
BspEI TCCGGA 1 cut(s) 324
BspHI TCATGA 1 cut(s) 832
BspLI GGNNCC 1 cut(s) 1017
BspMAI CTGCAG 1 cut(s) 139
BspPI GGATC 2 cut(s) 429, 1139
BspT104I TTCGAA 2 cut(s) 551, 722
BspTNI GGTCTC 1 cut(s) 843
BsrI ACTGG 1 cut(s) 768
BssECI CCNNGG 3 cut(s) 464, 1042, 1148
BssMI GATC 4 cut(s) 10, 294, 421, 1144
BssNI GRCGYC 1 cut(s) 829
BssT1I CCWWGG 2 cut(s) 1042, 1148
Bst2UI CCWGG 2 cut(s) 1029, 1053
Bst4CI ACNGT 6 cut(s) 8, 36, 63, 413, 468, 702
Bst6I CTCTTC 1 cut(s) 721
BstACI GRCGYC 1 cut(s) 829
BstBI TTCGAA 2 cut(s) 551, 722
BstDEI CTNAG 1 cut(s) 39
BstDSI CCRYGG 1 cut(s) 464
BstEII GGTNACC 1 cut(s) 458
BstF5I GGATG 6 cut(s) 591, 625, 827, 934, 951, 1114
BstKTI GATC 4 cut(s) 13, 297, 424, 1147
BstMAI GTCTC 2 cut(s) 400, 843
BstMBI GATC 4 cut(s) 10, 294, 421, 1144
BstMWI GCNNNNNNNGC 1 cut(s) 981
BstNI CCWGG 2 cut(s) 1029, 1053
BstNSI RCATGY 1 cut(s) 1081
BstPI GGTNACC 1 cut(s) 458
BstSCI CCNGG 2 cut(s) 1027, 1051
BstSFI CTRYAG 2 cut(s) 135, 900
BstV1I GCAGC 2 cut(s) 121, 352
BstX2I RGATCY 1 cut(s) 294
BstYI RGATCY 1 cut(s) 294
BsuI GTATCC 1 cut(s) 1025
BsuRI GGCC 1 cut(s) 975
BtgI CCRYGG 1 cut(s) 464
BtsCI GGATG 6 cut(s) 591, 625, 827, 934, 951, 1114
BtsIMutI CAGTG 2 cut(s) 13, 439
CciI TCATGA 1 cut(s) 832
Cfr13I GGNCC 1 cut(s) 1130
CseI GACGC 1 cut(s) 614
Csp6I GTAC 5 cut(s) 64, 221, 442, 496, 1081
CviAII CATG 9 cut(s) 19, 164, 248, 400, 510, 539, 710, 833, 1078
CviJI RGCY 7 cut(s) 134, 265, 365, 775, 782, 962, 975
CviKI_1 RGCY 7 cut(s) 134, 265, 365, 775, 782, 962, 975
CviQI GTAC 5 cut(s) 64, 221, 442, 496, 1081
DdeI CTNAG 1 cut(s) 39
DpnI GATC 4 cut(s) 12, 296, 423, 1146
DpnII GATC 4 cut(s) 10, 294, 421, 1144
Eam1104I CTCTTC 1 cut(s) 721
EarI CTCTTC 1 cut(s) 721
EciI GGCGGA 1 cut(s) 218
Eco130I CCWWGG 2 cut(s) 1042, 1148
Eco31I GGTCTC 1 cut(s) 843
Eco47I GGWCC 1 cut(s) 1130
Eco91I GGTNACC 1 cut(s) 458
EcoO65I GGTNACC 1 cut(s) 458
EcoRII CCWGG 2 cut(s) 1027, 1051
EcoT14I CCWWGG 2 cut(s) 1042, 1148
EcoT22I ATGCAT 1 cut(s) 289
ErhI CCWWGG 2 cut(s) 1042, 1148
FaeI CATG 9 cut(s) 22, 167, 251, 403, 513, 542, 713, 836, 1081
FalI AAGNNNNNCTT 2 cut(s) 960, 992
FatI CATG 9 cut(s) 18, 163, 247, 399, 509, 538, 709, 832, 1077
FauNDI CATATG 1 cut(s) 627
Fnu4HI GCNGC 2 cut(s) 135, 366
FokI GGATG 6 cut(s) 598, 632, 834, 938, 941, 1101
Fsp4HI GCNGC 2 cut(s) 135, 366
FspBI CTAG 1 cut(s) 776
GluI GCNGC 2 cut(s) 135, 366
GsuI CTGGAG 2 cut(s) 785, 1011
HaeIII GGCC 1 cut(s) 975
HapII CCGG 1 cut(s) 325
HgaI GACGC 1 cut(s) 614
Hin1I GRCGYC 1 cut(s) 829
Hin1II CATG 9 cut(s) 22, 167, 251, 403, 513, 542, 713, 836, 1081
HinfI GANTC 4 cut(s) 351, 556, 656, 987
HpaII CCGG 1 cut(s) 325
HphI GGTGA 3 cut(s) 349, 470, 953
Hpy166II GTNNAC 5 cut(s) 32, 350, 442, 745, 827
Hpy188I TCNGA 3 cut(s) 40, 379, 604
Hpy188III TCNNGA 4 cut(s) 325, 666, 797, 833
Hpy8I GTNNAC 5 cut(s) 32, 350, 442, 745, 827
Hpy99I CGWCG 1 cut(s) 204
HpyAV CCTTC 6 cut(s) 420, 449, 718, 801, 809, 938
HpyCH4III ACNGT 6 cut(s) 8, 36, 63, 413, 468, 702
HpyCH4IV ACGT 2 cut(s) 219, 829
HpyCH4V TGCA 8 cut(s) 50, 137, 287, 373, 623, 924, 1060, 1096
HpyF10VI GCNNNNNNNGC 1 cut(s) 981
HpyF3I CTNAG 1 cut(s) 39
HpySE526I ACGT 2 cut(s) 219, 829
Hsp92I GRCGYC 1 cut(s) 829
Hsp92II CATG 9 cut(s) 22, 167, 251, 403, 513, 542, 713, 836, 1081
Kpn2I TCCGGA 1 cut(s) 324
Kzo9I GATC 4 cut(s) 10, 294, 421, 1144
Lsp1109I GCAGC 2 cut(s) 121, 352
LweI GCATC 4 cut(s) 274, 296, 610, 1009
MaeI CTAG 1 cut(s) 776
MaeII ACGT 2 cut(s) 219, 829
MaeIII GTNAC 6 cut(s) 458, 515, 631, 640, 683, 947
MalI GATC 4 cut(s) 12, 296, 423, 1146
MboI GATC 4 cut(s) 10, 294, 421, 1144
MboII GAAGA 8 cut(s) 5, 514, 565, 659, 708, 711, 761, 889
MflI RGATCY 1 cut(s) 294
MluCI AATT 3 cut(s) 143, 933, 1063
MlyI GAGTC 1 cut(s) 345
MmeI TCCRAC 3 cut(s) 255, 582, 597
MnlI CCTC 5 cut(s) 34, 333, 493, 724, 1035
Mph1103I ATGCAT 1 cut(s) 289
MroI TCCGGA 1 cut(s) 324
MseI TTAA 3 cut(s) 45, 387, 692
MspI CCGG 1 cut(s) 325
MspR9I CCNGG 2 cut(s) 1029, 1053
Mva1269I GAATGC 2 cut(s) 1062, 1098
MvaI CCWGG 2 cut(s) 1029, 1053
MwoI GCNNNNNNNGC 1 cut(s) 981
NdeI CATATG 1 cut(s) 627
NdeII GATC 4 cut(s) 10, 294, 421, 1144
NlaIII CATG 9 cut(s) 22, 167, 251, 403, 513, 542, 713, 836, 1081
NlaIV GGNNCC 1 cut(s) 1017
NmuCI GTSAC 4 cut(s) 458, 515, 631, 683
NsiI ATGCAT 1 cut(s) 289
NspI RCATGY 1 cut(s) 1081
NspV TTCGAA 2 cut(s) 551, 722
PagI TCATGA 1 cut(s) 832
PciI ACATGT 1 cut(s) 1077
PctI GAATGC 2 cut(s) 1062, 1098
PfeI GAWTC 3 cut(s) 556, 656, 987
PflMI CCANNNNNTGG 1 cut(s) 490
PfoI TCCNGGA 2 cut(s) 1027, 1051
PkrI GCNGC 2 cut(s) 136, 367
PleI GAGTC 1 cut(s) 345
PpsI GAGTC 1 cut(s) 345
PscI ACATGT 1 cut(s) 1077
Psp6I CCWGG 2 cut(s) 1027, 1051
PspEI GGTNACC 1 cut(s) 458
PspGI CCWGG 2 cut(s) 1027, 1051
PspN4I GGNNCC 1 cut(s) 1017
PspPI GGNCC 1 cut(s) 1130
PstI CTGCAG 1 cut(s) 139
PsuI RGATCY 1 cut(s) 294
RsaI GTAC 5 cut(s) 65, 222, 443, 497, 1082
RsaNI GTAC 5 cut(s) 64, 221, 442, 496, 1081
SaqAI TTAA 3 cut(s) 45, 387, 692
SatI GCNGC 2 cut(s) 135, 366
Sau3AI GATC 4 cut(s) 10, 294, 421, 1144
Sau96I GGNCC 1 cut(s) 1130
SchI GAGTC 1 cut(s) 345
ScrFI CCNGG 2 cut(s) 1029, 1053
SfaNI GCATC 4 cut(s) 274, 296, 610, 1009
SfcI CTRYAG 2 cut(s) 135, 900
SfuI TTCGAA 2 cut(s) 551, 722
SinI GGWCC 1 cut(s) 1130
Sse9I AATT 3 cut(s) 143, 933, 1063
SsiI CCGC 1 cut(s) 229
SspMI CTAG 1 cut(s) 776
StyD4I CCNGG 2 cut(s) 1027, 1051
StyI CCWWGG 2 cut(s) 1042, 1148
TaaI ACNGT 6 cut(s) 8, 36, 63, 413, 468, 702
TaiI ACGT 2 cut(s) 222, 832
TaqI TCGA 4 cut(s) 424, 551, 722, 1143
TasI AATT 3 cut(s) 143, 933, 1063
TatI WGTACW 2 cut(s) 441, 1080
TfiI GAWTC 3 cut(s) 556, 656, 987
Tru1I TTAA 3 cut(s) 45, 387, 692
Tru9I TTAA 3 cut(s) 45, 387, 692
TscAI CASTG 2 cut(s) 13, 439
TseFI GTSAC 4 cut(s) 458, 515, 631, 683
TseI GCWGC 2 cut(s) 134, 365
Tsp45I GTSAC 4 cut(s) 458, 515, 631, 683
TspDTI ATGAA 8 cut(s) 35, 39, 264, 269, 590, 698, 945, 981
TspRI CASTG 2 cut(s) 13, 439
Van91I CCANNNNNTGG 1 cut(s) 490
VpaK11BI GGWCC 1 cut(s) 1130
XapI RAATTY 2 cut(s) 143, 1063
XceI RCATGY 1 cut(s) 1081
XspI CTAG 1 cut(s) 776
ZraI GACGTC 1 cut(s) 830
Zsp2I ATGCAT 1 cut(s) 289
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.