Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0016271

Physical Location & Seq

Genomic Coordinates Forward (+)

67217611 .. 67219000

Gene Structure 1390 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G044040.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGGGGAGAAGACCTTGCTGTTCTAAGGAGGGAGTGAACAAGGGACCTTGGACAGCTGAAGAAGACAAGATGCTTGCGGATCATATCAAAGCTCATGGCGAACAAAAATGGAGCAGCATTCCTAAACAAACAGGGCTCAAGAGATGTGGGAAGAGTTGCAGGCTTCGGTGGTTGAATTATCTAAGACCGAATATAAAACGAGGCAACATTACGCAAGAGGAAGAGGACCTCATCATTAGGCTCCATAAACTCTTAGGAAACAGATGGTCTCTAATAGCAGGAAGAATTCCGGGGCGAACAGACAATGAAATCAAGAACTACTGGAACGGCCACTTGTGCAAGAAATCACAGCTGGAAAAGTCTAAGGTTGCAGCAAAGAATATGAGACCCTCCGACGAGGCCAAAGTTGAAGAGGATCATCGTCATGACTCCAAAGTTGAATCTGAATCCAGTGAAGGGTCATTATTCTCTCATTCATCTACTACGTCAACTACAACGGAAGAAGATTCGTCGGATATTTTGATGGGTTTTTACACCAGGGAGATAACTCTGTCGGAGTTTCTGGATACCGACTTTACAAAGTTCAGCAGTATGATCAGTACTGATAAGGTACCAATGGTTCAAGGAGAAGGAGAGGATCAAATTCAGAAACAGCCTCTGGTTAGTTCCAGTCAAGCTGAAGCCGAGGCTAATGATGAAGCATCTATGAATGTGATAATATCGCCGGAAATGATGGACAACTTGATCGTCTGGGAAGATCAAAGTGATTCAGATTTCGGATTTCAACTTTCGGCAGCTTTCACGGACTCTGTTGCAGACGAAGAAAGAATTTTGGATTTTATGAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006355 GO:0006357 GO:0006725 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009058 GO:0009611 GO:0009628 GO:0009651 GO:0009698 GO:0009699 GO:0009719 GO:0009725 GO:0009737 GO:0009751 GO:0009800 GO:0009803 GO:0009889 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0014070 GO:0016053 GO:0019219 GO:0019222 GO:0019438 GO:0019748 GO:0019752 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0032787 GO:0033993 GO:0042221 GO:0042493 GO:0042537 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0044550 GO:0046394 GO:0046677 GO:0048519 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0072330 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

282

Amino Acids

31.96

Weight (kDa)

5.1

Isoelectric Point (pI)

56.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	14 - 61	2.8e-16	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	17 - 75	6.9e-14	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	67 - 112	8.1e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	71 - 115	3.4e-08	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0016271)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g31090
malus_domestica	MD08G1070800.v1.1
prunus_persica	Prupe.1G405300_v2.0.a1
pyrus_communis	pycom08g05860
rosa_chinensis	RchiOBHm_Chr6g0311701
rosa_laevigata	RLG00000010381
rosa_multiflora	Rmu_sc0002888.1_g000020
rosa_roxburghii	Rroxscaffold_7G00157380
rosa_rugosa	Rorug06G0390900 Rorug06G0390900
rosa_samantha	Rh6AG506200 Rh6BG516900 Rh6CG522800 Rh6DG508600
rosa_wichuraiana	Rw6G044040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	610
AccB1I	GGYRCC	1 cut(s)	610
AciI	CCGC	1 cut(s)	77
AclWI	GGATC	3 cut(s)	87, 423, 645
AcoI	YGGCCR	1 cut(s)	328
AcsI	RAATTY	3 cut(s)	285, 642, 828
AcuI	CTGAAG	2 cut(s)	78, 699
AfaI	GTAC	2 cut(s)	601, 612
AfiI	CCNNNNNNNGG	1 cut(s)	456
AgsI	TTSAA	5 cut(s)	175, 410, 440, 623, 785
AjnI	CCWGG	1 cut(s)	536
AluBI	AGCT	5 cut(s)	56, 92, 352, 677, 797
AluI	AGCT	5 cut(s)	56, 92, 352, 677, 797
Alw26I	GTCTC	2 cut(s)	273, 379
AlwI	GGATC	3 cut(s)	87, 423, 645
AlwNI	CAGNNNCTG	1 cut(s)	658
AoxI	GGCC	2 cut(s)	328, 399
ApeKI	GCWGC	3 cut(s)	114, 371, 794
ApoI	RAATTY	3 cut(s)	285, 642, 828
Asp718I	GGTACC	1 cut(s)	610
AspS9I	GGNCC	2 cut(s)	44, 226
AsuC2I	CCSGG	1 cut(s)	291
AvaII	GGWCC	2 cut(s)	44, 226
BanI	GGYRCC	1 cut(s)	610
BanII	GRGCYC	1 cut(s)	138
BbsI	GAAGAC	2 cut(s)	16, 69
BbvI	GCAGC	3 cut(s)	126, 383, 806
BccI	CCATC	3 cut(s)	258, 517, 727
BceAI	ACGGC	1 cut(s)	343
BciT130I	CCWGG	1 cut(s)	538
BciVI	GTATCC	1 cut(s)	559
BclI	TGATCA	1 cut(s)	594
BcnI	CCSGG	1 cut(s)	291
BcoDI	GTCTC	2 cut(s)	273, 379
BfuI	GTATCC	1 cut(s)	559
BisI	GCNGC	3 cut(s)	115, 372, 795
BlsI	GCNGC	3 cut(s)	116, 373, 796
BmcAI	AGTACT	1 cut(s)	601
Bme1390I	CCNGG	2 cut(s)	291, 538
Bme18I	GGWCC	2 cut(s)	44, 226
BmgT120I	GGNCC	2 cut(s)	44, 226
BmiI	GGNNCC	3 cut(s)	45, 242, 612
BmrFI	CCNGG	2 cut(s)	291, 538
BmsI	GCATC	2 cut(s)	60, 710
BpiI	GAAGAC	2 cut(s)	16, 69
BpuEI	CTTGAG	1 cut(s)	122
BpuMI	CCSGG	1 cut(s)	291
BsaI	GGTCTC	2 cut(s)	273, 379
BsaJI	CCNNGG	4 cut(s)	47, 290, 537, 684
Bsc4I	CCNNNNNNNGG	1 cut(s)	456
Bse1I	ACTGG	3 cut(s)	326, 450, 669
BseBI	CCWGG	1 cut(s)	538
BseDI	CCNNGG	4 cut(s)	47, 290, 537, 684
BseLI	CCNNNNNNNGG	1 cut(s)	456
BseNI	ACTGG	3 cut(s)	326, 450, 669
BseXI	GCAGC	3 cut(s)	126, 383, 806
BshFI	GGCC	2 cut(s)	330, 401
BshNI	GGYRCC	1 cut(s)	610
BsiSI	CCGG	2 cut(s)	290, 725
BslFI	GGGAC	1 cut(s)	57
BslI	CCNNNNNNNGG	1 cut(s)	456
BsmAI	GTCTC	2 cut(s)	273, 379
BsmFI	GGGAC	1 cut(s)	57
BsmI	GAATGC	1 cut(s)	117
BsnI	GGCC	2 cut(s)	330, 401
Bso31I	GGTCTC	2 cut(s)	273, 379
Bsp1286I	GDGCHC	1 cut(s)	138
Bsp143I	GATC	6 cut(s)	79, 415, 594, 637, 744, 757
BspACI	CCGC	1 cut(s)	77
BspANI	GGCC	2 cut(s)	330, 401
BspHI	TCATGA	1 cut(s)	424
BspLI	GGNNCC	3 cut(s)	45, 242, 612
BspPI	GGATC	3 cut(s)	87, 423, 645
BspT107I	GGYRCC	1 cut(s)	610
BspTNI	GGTCTC	2 cut(s)	273, 379
BsrI	ACTGG	3 cut(s)	326, 450, 669
BssECI	CCNNGG	4 cut(s)	47, 290, 537, 684
BssMI	GATC	6 cut(s)	79, 415, 594, 637, 744, 757
BssT1I	CCWWGG	1 cut(s)	47
Bst2UI	CCWGG	1 cut(s)	538
Bst6I	CTCTTC	3 cut(s)	146, 216, 405
BstC8I	GCNNGC	2 cut(s)	75, 161
BstDEI	CTNAG	4 cut(s)	24, 182, 253, 363
BstKTI	GATC	6 cut(s)	82, 418, 597, 640, 747, 760
BstMAI	GTCTC	2 cut(s)	273, 379
BstMBI	GATC	6 cut(s)	79, 415, 594, 637, 744, 757
BstMWI	GCNNNNNNNGC	1 cut(s)	336
BstNI	CCWGG	1 cut(s)	538
BstSCI	CCNGG	2 cut(s)	289, 536
BstV1I	GCAGC	3 cut(s)	126, 383, 806
BstV2I	GAAGAC	2 cut(s)	16, 69
BsuI	GTATCC	1 cut(s)	559
BsuRI	GGCC	2 cut(s)	330, 401
BtsIMutI	CAGTG	1 cut(s)	457
Cac8I	GCNNGC	2 cut(s)	75, 161
CaiI	CAGNNNCTG	1 cut(s)	658
CciI	TCATGA	1 cut(s)	424
Cfr13I	GGNCC	2 cut(s)	44, 226
Csp6I	GTAC	2 cut(s)	600, 611
CspCI	CAANNNNNGTGG	2 cut(s)	127, 162
CviAII	CATG	2 cut(s)	95, 425
CviQI	GTAC	2 cut(s)	600, 611
DdeI	CTNAG	4 cut(s)	24, 182, 253, 363
DpnI	GATC	6 cut(s)	81, 417, 596, 639, 746, 759
DpnII	GATC	6 cut(s)	79, 415, 594, 637, 744, 757
EaeI	YGGCCR	1 cut(s)	328
Eam1104I	CTCTTC	3 cut(s)	146, 216, 405
EarI	CTCTTC	3 cut(s)	146, 216, 405
Eco130I	CCWWGG	1 cut(s)	47
Eco24I	GRGCYC	1 cut(s)	138
Eco31I	GGTCTC	2 cut(s)	273, 379
Eco47I	GGWCC	2 cut(s)	44, 226
Eco57I	CTGAAG	2 cut(s)	78, 699
EcoO109I	RGGNCCY	2 cut(s)	44, 226
EcoRI	GAATTC	1 cut(s)	285
EcoRII	CCWGG	1 cut(s)	536
EcoT14I	CCWWGG	1 cut(s)	47
EcoT38I	GRGCYC	1 cut(s)	138
ErhI	CCWWGG	1 cut(s)	47
FaeI	CATG	2 cut(s)	98, 428
FaiI	YATR	9 cut(s)	84, 96, 194, 246, 383, 426, 593, 707, 842
FaqI	GGGAC	1 cut(s)	57
FatI	CATG	2 cut(s)	94, 424
FbaI	TGATCA	1 cut(s)	594
Fnu4HI	GCNGC	3 cut(s)	115, 372, 795
FriOI	GRGCYC	1 cut(s)	138
Fsp4HI	GCNGC	3 cut(s)	115, 372, 795
GluI	GCNGC	3 cut(s)	115, 372, 795
HaeIII	GGCC	2 cut(s)	330, 401
HapII	CCGG	2 cut(s)	290, 725
Hin1II	CATG	2 cut(s)	98, 428
HincII	GTYRAC	1 cut(s)	489
HindII	GTYRAC	1 cut(s)	489
HinfI	GANTC	6 cut(s)	428, 440, 446, 506, 767, 806
HpaII	CCGG	2 cut(s)	290, 725
Hpy166II	GTNNAC	2 cut(s)	37, 489
Hpy188I	TCNGA	7 cut(s)	394, 445, 514, 556, 648, 772, 779
Hpy188III	TCNNGA	4 cut(s)	139, 313, 425, 563
Hpy8I	GTNNAC	2 cut(s)	37, 489
Hpy99I	CGWCG	2 cut(s)	398, 514
HpyAV	CCTTC	2 cut(s)	449, 623
HpyCH4IV	ACGT	1 cut(s)	485
HpyCH4V	TGCA	4 cut(s)	159, 339, 371, 815
HpyF10VI	GCNNNNNNNGC	1 cut(s)	336
HpyF3I	CTNAG	4 cut(s)	24, 182, 253, 363
HpySE526I	ACGT	1 cut(s)	485
Hsp92II	CATG	2 cut(s)	98, 428
KpnI	GGTACC	1 cut(s)	614
Ksp22I	TGATCA	1 cut(s)	594
Kzo9I	GATC	6 cut(s)	79, 415, 594, 637, 744, 757
LmnI	GCTCC	2 cut(s)	111, 246
Lsp1109I	GCAGC	3 cut(s)	126, 383, 806
LweI	GCATC	2 cut(s)	60, 710
MaeII	ACGT	1 cut(s)	485
MalI	GATC	6 cut(s)	81, 417, 596, 639, 746, 759
MboI	GATC	6 cut(s)	79, 415, 594, 637, 744, 757
MhlI	GDGCHC	1 cut(s)	138
MluCI	AATT	5 cut(s)	175, 285, 642, 828, 844
MlyI	GAGTC	2 cut(s)	422, 800
MmeI	TCCRAC	3 cut(s)	417, 492, 534
MseI	TTAA	1 cut(s)	847
MslI	CAYNNNNRTG	1 cut(s)	423
MspA1I	CMGCKG	2 cut(s)	56, 352
MspI	CCGG	2 cut(s)	290, 725
MspR9I	CCNGG	2 cut(s)	291, 538
Mva1269I	GAATGC	1 cut(s)	117
MvaI	CCWGG	1 cut(s)	538
MwoI	GCNNNNNNNGC	1 cut(s)	336
NciI	CCSGG	1 cut(s)	291
NdeII	GATC	6 cut(s)	79, 415, 594, 637, 744, 757
NlaIII	CATG	2 cut(s)	98, 428
NlaIV	GGNNCC	3 cut(s)	45, 242, 612
NmeAIII	GCCGAG	1 cut(s)	709
PagI	TCATGA	1 cut(s)	424
PctI	GAATGC	1 cut(s)	117
PfeI	GAWTC	4 cut(s)	440, 446, 506, 767
PkrI	GCNGC	3 cut(s)	116, 373, 796
PleI	GAGTC	2 cut(s)	422, 800
PpsI	GAGTC	2 cut(s)	422, 800
PpuMI	RGGWCCY	2 cut(s)	44, 226
Psp5II	RGGWCCY	2 cut(s)	44, 226
Psp6I	CCWGG	1 cut(s)	536
PspGI	CCWGG	1 cut(s)	536
PspN4I	GGNNCC	3 cut(s)	45, 242, 612
PspPI	GGNCC	2 cut(s)	44, 226
PspPPI	RGGWCCY	2 cut(s)	44, 226
PsrI	GAACNNNNNNTAC	2 cut(s)	603, 635
PstNI	CAGNNNCTG	1 cut(s)	658
PvuII	CAGCTG	2 cut(s)	56, 352
RsaI	GTAC	2 cut(s)	601, 612
RsaNI	GTAC	2 cut(s)	600, 611
RseI	CAYNNNNRTG	1 cut(s)	423
SaqAI	TTAA	1 cut(s)	847
SatI	GCNGC	3 cut(s)	115, 372, 795
Sau3AI	GATC	6 cut(s)	79, 415, 594, 637, 744, 757
Sau96I	GGNCC	2 cut(s)	44, 226
ScaI	AGTACT	1 cut(s)	601
SchI	GAGTC	2 cut(s)	422, 800
ScrFI	CCNGG	2 cut(s)	291, 538
SduI	GDGCHC	1 cut(s)	138
SfaNI	GCATC	2 cut(s)	60, 710
SinI	GGWCC	2 cut(s)	44, 226
SmiMI	CAYNNNNRTG	1 cut(s)	423
SmlI	CTYRAG	1 cut(s)	137
SmoI	CTYRAG	1 cut(s)	137
Sse9I	AATT	5 cut(s)	175, 285, 642, 828, 844
SsiI	CCGC	1 cut(s)	77
StyD4I	CCNGG	2 cut(s)	289, 536
StyI	CCWWGG	1 cut(s)	47
TaiI	ACGT	1 cut(s)	488
TaqII	GACCGA	1 cut(s)	202
TasI	AATT	5 cut(s)	175, 285, 642, 828, 844
TatI	WGTACW	1 cut(s)	599
TfiI	GAWTC	4 cut(s)	440, 446, 506, 767
Tru1I	TTAA	1 cut(s)	847
Tru9I	TTAA	1 cut(s)	847
TscAI	CASTG	1 cut(s)	457
TseI	GCWGC	3 cut(s)	114, 371, 794
TspDTI	ATGAA	4 cut(s)	321, 465, 711, 722
TspGWI	ACGGA	2 cut(s)	512, 818
TspRI	CASTG	1 cut(s)	457
VpaK11BI	GGWCC	2 cut(s)	44, 226
XapI	RAATTY	3 cut(s)	285, 642, 828
ZrmI	AGTACT	1 cut(s)	601

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.