Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0016271

Physical Location & Seq

Genomic Coordinates Forward (+)

71082913 .. 71084387

Gene Structure 1475 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG516900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGTGTAGTTTGTTGACTAGTGTAGGTTTTGAACTTTTGATTGATATGTACAGATGGTCTCTAATAGCAGGAAGAATTCCGGGGCGAACAGACAATGAAATCAAGAACTACTGGAACGGCCACTTGTGCAAGAAATCACAGCTGGAAAAGTCTAAGGTTGCAGCAAAGAATATGAGACCCTCCGACGAGGCCAAAGTTGAAGAGGATCATCGTCATGACTCCAAAGTTGAATCTGAATCCAGTGAAGGGTCATTATTCTCTCATTCATCTACTACGTCAACTACAACGGAAGAAGATTCGTCGGATATTTTGATGGATTTTTACACCAGGGAGATAACTCTGTCGGAGTTTCTGGATACCGACTTTACAAAGTTCAGCAGTATGATCAGTACTGATAAGGTACTGATGGTTCAAGGAGAAGGAGCGGATCAAATTCAGAAACAGCCTCAGGATAGTTCCAGTCAAGCTGAAGCCGAAGCTAATGATGAAGCACCTATGAATGTGATAATATCGCAGGAATTGATGGACAACTTGATCGGCTGGGAAGATCAAAGTGATTCAGATTTCGGATTTCAACTTTCGGCAGCTTTCACGGACTTTGTTGCAGACGAAGAAAGAATTTTGGATTTTATGAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006355 GO:0006357 GO:0006725 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009058 GO:0009611 GO:0009628 GO:0009651 GO:0009698 GO:0009699 GO:0009719 GO:0009725 GO:0009737 GO:0009751 GO:0009800 GO:0009803 GO:0009889 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0014070 GO:0016053 GO:0019219 GO:0019222 GO:0019438 GO:0019748 GO:0019752 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0032787 GO:0033993 GO:0042221 GO:0042493 GO:0042537 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0044550 GO:0046394 GO:0046677 GO:0048519 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0072330 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

212

Amino Acids

23.92

Weight (kDa)

4.3

Isoelectric Point (pI)

45.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	18 - 42	4.5e-07	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0016271)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g31090
malus_domestica	MD08G1070800.v1.1
prunus_persica	Prupe.1G405300_v2.0.a1
pyrus_communis	pycom08g05860
rosa_chinensis	RchiOBHm_Chr6g0311701
rosa_laevigata	RLG00000010381
rosa_multiflora	Rmu_sc0002888.1_g000020
rosa_roxburghii	Rroxscaffold_7G00157380
rosa_rugosa	Rorug06G0390900 Rorug06G0390900
rosa_samantha	Rh6AG506200 Rh6BG516900 Rh6CG522800 Rh6DG508600
rosa_wichuraiana	Rw6G044040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	425
AciI	CCGC	1 cut(s)	425
AclWI	GGATC	2 cut(s)	213, 435
AcoI	YGGCCR	1 cut(s)	118
AcsI	RAATTY	3 cut(s)	75, 432, 618
AcuI	CTGAAG	1 cut(s)	489
AfaI	GTAC	3 cut(s)	50, 391, 402
AfiI	CCNNNNNNNGG	1 cut(s)	246
AgsI	TTSAA	5 cut(s)	32, 200, 230, 413, 575
AhlI	ACTAGT	1 cut(s)	17
AjnI	CCWGG	1 cut(s)	326
AluBI	AGCT	4 cut(s)	142, 467, 479, 587
AluI	AGCT	4 cut(s)	142, 467, 479, 587
Alw26I	GTCTC	2 cut(s)	63, 169
AlwI	GGATC	2 cut(s)	213, 435
AoxI	GGCC	2 cut(s)	118, 189
ApeKI	GCWGC	2 cut(s)	161, 584
ApoI	RAATTY	3 cut(s)	75, 432, 618
AsuC2I	CCSGG	1 cut(s)	81
AxyI	CCTNAGG	1 cut(s)	447
BbvI	GCAGC	2 cut(s)	173, 596
BccI	CCATC	4 cut(s)	48, 307, 400, 517
BceAI	ACGGC	1 cut(s)	133
BciT130I	CCWGG	1 cut(s)	328
BciVI	GTATCC	1 cut(s)	349
BclI	TGATCA	1 cut(s)	384
BcnI	CCSGG	1 cut(s)	81
BcoDI	GTCTC	2 cut(s)	63, 169
BcuI	ACTAGT	1 cut(s)	17
BfaI	CTAG	1 cut(s)	18
BfuI	GTATCC	1 cut(s)	349
BisI	GCNGC	2 cut(s)	162, 585
BlsI	GCNGC	2 cut(s)	163, 586
BmcAI	AGTACT	1 cut(s)	391
Bme1390I	CCNGG	2 cut(s)	81, 328
BmrFI	CCNGG	2 cut(s)	81, 328
BpuMI	CCSGG	1 cut(s)	81
BsaI	GGTCTC	2 cut(s)	63, 169
BsaJI	CCNNGG	2 cut(s)	80, 327
Bsc4I	CCNNNNNNNGG	1 cut(s)	246
Bse1I	ACTGG	3 cut(s)	116, 240, 459
Bse21I	CCTNAGG	1 cut(s)	447
BseBI	CCWGG	1 cut(s)	328
BseDI	CCNNGG	2 cut(s)	80, 327
BseLI	CCNNNNNNNGG	1 cut(s)	246
BseMII	CTCAG	1 cut(s)	461
BseNI	ACTGG	3 cut(s)	116, 240, 459
BseXI	GCAGC	2 cut(s)	173, 596
BseYI	CCCAGC	1 cut(s)	540
BshFI	GGCC	2 cut(s)	120, 191
BsiSI	CCGG	1 cut(s)	80
BslI	CCNNNNNNNGG	1 cut(s)	246
BsmAI	GTCTC	2 cut(s)	63, 169
BsnI	GGCC	2 cut(s)	120, 191
Bso31I	GGTCTC	2 cut(s)	63, 169
Bsp1407I	TGTACA	1 cut(s)	48
Bsp143I	GATC	5 cut(s)	205, 384, 427, 534, 547
BspACI	CCGC	1 cut(s)	425
BspANI	GGCC	2 cut(s)	120, 191
BspCNI	CTCAG	1 cut(s)	460
BspHI	TCATGA	1 cut(s)	214
BspPI	GGATC	2 cut(s)	213, 435
BspTNI	GGTCTC	2 cut(s)	63, 169
BsrBI	CCGCTC	1 cut(s)	425
BsrGI	TGTACA	1 cut(s)	48
BsrI	ACTGG	3 cut(s)	116, 240, 459
BssECI	CCNNGG	2 cut(s)	80, 327
BssMI	GATC	5 cut(s)	205, 384, 427, 534, 547
Bst2UI	CCWGG	1 cut(s)	328
Bst6I	CTCTTC	1 cut(s)	195
BstAUI	TGTACA	1 cut(s)	48
BstDEI	CTNAG	2 cut(s)	153, 447
BstKTI	GATC	5 cut(s)	208, 387, 430, 537, 550
BstMAI	GTCTC	2 cut(s)	63, 169
BstMBI	GATC	5 cut(s)	205, 384, 427, 534, 547
BstMWI	GCNNNNNNNGC	1 cut(s)	126
BstNI	CCWGG	1 cut(s)	328
BstSCI	CCNGG	2 cut(s)	79, 326
BstV1I	GCAGC	2 cut(s)	173, 596
Bsu36I	CCTNAGG	1 cut(s)	447
BsuI	GTATCC	1 cut(s)	349
BsuRI	GGCC	2 cut(s)	120, 191
BtsIMutI	CAGTG	1 cut(s)	247
CciI	TCATGA	1 cut(s)	214
Csp6I	GTAC	3 cut(s)	49, 390, 401
CviAII	CATG	1 cut(s)	215
CviJI	RGCY	9 cut(s)	120, 142, 191, 445, 467, 473, 479, 540, 587
CviKI_1	RGCY	9 cut(s)	120, 142, 191, 445, 467, 473, 479, 540, 587
CviQI	GTAC	3 cut(s)	49, 390, 401
DdeI	CTNAG	2 cut(s)	153, 447
DpnI	GATC	5 cut(s)	207, 386, 429, 536, 549
DpnII	GATC	5 cut(s)	205, 384, 427, 534, 547
EaeI	YGGCCR	1 cut(s)	118
Eam1104I	CTCTTC	1 cut(s)	195
EarI	CTCTTC	1 cut(s)	195
Eco31I	GGTCTC	2 cut(s)	63, 169
Eco57I	CTGAAG	1 cut(s)	489
Eco81I	CCTNAGG	1 cut(s)	447
EcoRI	GAATTC	1 cut(s)	75
EcoRII	CCWGG	1 cut(s)	326
FaeI	CATG	1 cut(s)	218
FaiI	YATR	6 cut(s)	47, 173, 216, 383, 497, 632
FatI	CATG	1 cut(s)	214
FbaI	TGATCA	1 cut(s)	384
Fnu4HI	GCNGC	2 cut(s)	162, 585
Fsp4HI	GCNGC	2 cut(s)	162, 585
FspBI	CTAG	1 cut(s)	18
GluI	GCNGC	2 cut(s)	162, 585
GsaI	CCCAGC	1 cut(s)	544
HaeIII	GGCC	2 cut(s)	120, 191
HapII	CCGG	1 cut(s)	80
Hin1II	CATG	1 cut(s)	218
HincII	GTYRAC	2 cut(s)	15, 279
HindII	GTYRAC	2 cut(s)	15, 279
HinfI	GANTC	5 cut(s)	218, 230, 236, 296, 557
HpaII	CCGG	1 cut(s)	80
Hpy166II	GTNNAC	2 cut(s)	15, 279
Hpy188I	TCNGA	7 cut(s)	184, 235, 304, 346, 438, 562, 569
Hpy188III	TCNNGA	4 cut(s)	103, 215, 353, 449
Hpy8I	GTNNAC	2 cut(s)	15, 279
Hpy99I	CGWCG	2 cut(s)	188, 304
HpyAV	CCTTC	2 cut(s)	239, 413
HpyCH4IV	ACGT	1 cut(s)	275
HpyCH4V	TGCA	3 cut(s)	129, 161, 605
HpyF10VI	GCNNNNNNNGC	1 cut(s)	126
HpyF3I	CTNAG	2 cut(s)	153, 447
HpySE526I	ACGT	1 cut(s)	275
Hsp92II	CATG	1 cut(s)	218
Ksp22I	TGATCA	1 cut(s)	384
Kzo9I	GATC	5 cut(s)	205, 384, 427, 534, 547
LmnI	GCTCC	1 cut(s)	422
Lsp1109I	GCAGC	2 cut(s)	173, 596
MaeI	CTAG	1 cut(s)	18
MaeII	ACGT	1 cut(s)	275
MalI	GATC	5 cut(s)	207, 386, 429, 536, 549
MbiI	CCGCTC	1 cut(s)	425
MboI	GATC	5 cut(s)	205, 384, 427, 534, 547
MboII	GAAGA	6 cut(s)	84, 212, 302, 305, 557, 623
MluCI	AATT	5 cut(s)	75, 432, 518, 618, 634
MlyI	GAGTC	1 cut(s)	212
MmeI	TCCRAC	3 cut(s)	207, 282, 324
MnlI	CCTC	4 cut(s)	181, 190, 196, 456
MseI	TTAA	1 cut(s)	637
MslI	CAYNNNNRTG	1 cut(s)	213
MspA1I	CMGCKG	1 cut(s)	142
MspI	CCGG	1 cut(s)	80
MspR9I	CCNGG	2 cut(s)	81, 328
MvaI	CCWGG	1 cut(s)	328
MwoI	GCNNNNNNNGC	1 cut(s)	126
NciI	CCSGG	1 cut(s)	81
NdeII	GATC	5 cut(s)	205, 384, 427, 534, 547
NlaIII	CATG	1 cut(s)	218
PagI	TCATGA	1 cut(s)	214
PfeI	GAWTC	4 cut(s)	230, 236, 296, 557
PkrI	GCNGC	2 cut(s)	163, 586
PleI	GAGTC	1 cut(s)	212
PpsI	GAGTC	1 cut(s)	212
Psp6I	CCWGG	1 cut(s)	326
PspFI	CCCAGC	1 cut(s)	540
PspGI	CCWGG	1 cut(s)	326
PsrI	GAACNNNNNNTAC	2 cut(s)	393, 425
PvuII	CAGCTG	1 cut(s)	142
RsaI	GTAC	3 cut(s)	50, 391, 402
RsaNI	GTAC	3 cut(s)	49, 390, 401
RseI	CAYNNNNRTG	1 cut(s)	213
SaqAI	TTAA	1 cut(s)	637
SatI	GCNGC	2 cut(s)	162, 585
Sau3AI	GATC	5 cut(s)	205, 384, 427, 534, 547
ScaI	AGTACT	1 cut(s)	391
SchI	GAGTC	1 cut(s)	212
ScrFI	CCNGG	2 cut(s)	81, 328
SetI	ASST	9 cut(s)	28, 144, 159, 278, 402, 469, 481, 496, 589
SmiMI	CAYNNNNRTG	1 cut(s)	213
SpeI	ACTAGT	1 cut(s)	17
Sse9I	AATT	5 cut(s)	75, 432, 518, 618, 634
SsiI	CCGC	1 cut(s)	425
SspMI	CTAG	1 cut(s)	18
StyD4I	CCNGG	2 cut(s)	79, 326
TaiI	ACGT	1 cut(s)	278
TasI	AATT	5 cut(s)	75, 432, 518, 618, 634
TatI	WGTACW	2 cut(s)	48, 389
TfiI	GAWTC	4 cut(s)	230, 236, 296, 557
Tru1I	TTAA	1 cut(s)	637
Tru9I	TTAA	1 cut(s)	637
TscAI	CASTG	1 cut(s)	247
TseI	GCWGC	2 cut(s)	161, 584
TspDTI	ATGAA	4 cut(s)	111, 255, 501, 512
TspGWI	ACGGA	2 cut(s)	302, 608
TspRI	CASTG	1 cut(s)	247
XapI	RAATTY	3 cut(s)	75, 432, 618
XspI	CTAG	1 cut(s)	18
ZrmI	AGTACT	1 cut(s)	391

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.