Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002888.1

Orthogroup ID

OG0016271

Physical Location & Seq

Genomic Coordinates Forward (+)

98198 .. 99266

Gene Structure 1069 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002888.1_g000020.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

atggggagaagaccttgctgtactaaggagggagtgaacaagggaccttggacagctgaagaagacaagatgcttgcggatcatatcaaagctcatggcgaacaaaaatggagcagcattcctaaacaaacagggctcaagagatgtgggaagagttgcaggcttcggtggttgaattatctaagaccgaatataaaacgaggcaacattacgcaagaggaagaggacctcatcattaggctccataaactcttaggaaacagatggtctctaatagcaggaagaattccggggcgaacagacaatgaaatcaagaactactggaacggccacttgtgcaagaaatcacagctggaaaagtctaaggttgcagcaaagaatatgagaccctccgacgaggtcaaagttgaagaggatcatcgtcatgactccaaagttgaatctgaatccagtgaagggtcattattctctcattcatctactacggcaactacaacggaagaagattcatcggatattttgatgggtttttacaccagggagataactctgtcggagtttctggataccgactttacaaagttcagcagtatgatcagtactgataaggtactaatggttcaaggagaaggagaggttcaaattcagaaacagcctcaggttagttccagtcaagctgaagccgaggctaatgatgaagcacctatgaatgtgataatatcgccggaaatgatggacaacttgatcgtctgggaagatcaaactgattcagatttcggatttcaactttcggcagctttcacggactctgttgcagacgaagaaagaattttggattttatgaattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006355 GO:0006357 GO:0006725 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009058 GO:0009611 GO:0009628 GO:0009651 GO:0009698 GO:0009699 GO:0009719 GO:0009725 GO:0009737 GO:0009751 GO:0009800 GO:0009803 GO:0009889 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0014070 GO:0016053 GO:0019219 GO:0019222 GO:0019438 GO:0019748 GO:0019752 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0032787 GO:0033993 GO:0042221 GO:0042493 GO:0042537 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0044550 GO:0046394 GO:0046677 GO:0048519 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0072330 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

282

Amino Acids

32.02

Weight (kDa)

5.17

Isoelectric Point (pI)

55.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016271)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g31090
malus_domestica	MD08G1070800.v1.1
prunus_persica	Prupe.1G405300_v2.0.a1
pyrus_communis	pycom08g05860
rosa_chinensis	RchiOBHm_Chr6g0311701
rosa_laevigata	RLG00000010381
rosa_multiflora	Rmu_sc0002888.1_g000020
rosa_roxburghii	Rroxscaffold_7G00157380
rosa_rugosa	Rorug06G0390900 Rorug06G0390900
rosa_samantha	Rh6AG506200 Rh6BG516900 Rh6CG522800 Rh6DG508600
rosa_wichuraiana	Rw6G044040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	77
AclWI	GGATC	2 cut(s)	87, 423
AcoI	YGGCCR	1 cut(s)	328
AcsI	RAATTY	3 cut(s)	285, 642, 828
AcuI	CTGAAG	2 cut(s)	78, 699
AfaI	GTAC	3 cut(s)	22, 601, 612
AfiI	CCNNNNNNNGG	1 cut(s)	456
AgsI	TTSAA	6 cut(s)	175, 410, 440, 623, 641, 785
AjnI	CCWGG	1 cut(s)	536
AluBI	AGCT	5 cut(s)	56, 92, 352, 677, 797
AluI	AGCT	5 cut(s)	56, 92, 352, 677, 797
Alw26I	GTCTC	2 cut(s)	273, 379
AlwI	GGATC	2 cut(s)	87, 423
AoxI	GGCC	1 cut(s)	328
ApeKI	GCWGC	3 cut(s)	114, 371, 794
ApoI	RAATTY	3 cut(s)	285, 642, 828
AspS9I	GGNCC	2 cut(s)	44, 226
AsuC2I	CCSGG	1 cut(s)	291
AvaII	GGWCC	2 cut(s)	44, 226
AxyI	CCTNAGG	1 cut(s)	657
BanII	GRGCYC	1 cut(s)	138
BbsI	GAAGAC	2 cut(s)	16, 69
BbvI	GCAGC	3 cut(s)	126, 383, 806
BccI	CCATC	3 cut(s)	258, 517, 727
BceAI	ACGGC	2 cut(s)	343, 501
BciT130I	CCWGG	1 cut(s)	538
BciVI	GTATCC	1 cut(s)	559
BclI	TGATCA	1 cut(s)	594
BcnI	CCSGG	1 cut(s)	291
BcoDI	GTCTC	2 cut(s)	273, 379
BfuI	GTATCC	1 cut(s)	559
BisI	GCNGC	3 cut(s)	115, 372, 795
BlsI	GCNGC	3 cut(s)	116, 373, 796
BmcAI	AGTACT	1 cut(s)	601
Bme1390I	CCNGG	2 cut(s)	291, 538
Bme18I	GGWCC	2 cut(s)	44, 226
BmgT120I	GGNCC	2 cut(s)	44, 226
BmiI	GGNNCC	2 cut(s)	45, 242
BmrFI	CCNGG	2 cut(s)	291, 538
BmsI	GCATC	1 cut(s)	60
BpiI	GAAGAC	2 cut(s)	16, 69
BpuEI	CTTGAG	1 cut(s)	122
BpuMI	CCSGG	1 cut(s)	291
BsaI	GGTCTC	2 cut(s)	273, 379
BsaJI	CCNNGG	4 cut(s)	47, 290, 537, 684
Bsc4I	CCNNNNNNNGG	1 cut(s)	456
Bse1I	ACTGG	3 cut(s)	326, 450, 669
Bse21I	CCTNAGG	1 cut(s)	657
BseBI	CCWGG	1 cut(s)	538
BseDI	CCNNGG	4 cut(s)	47, 290, 537, 684
BseLI	CCNNNNNNNGG	1 cut(s)	456
BseMII	CTCAG	1 cut(s)	671
BseNI	ACTGG	3 cut(s)	326, 450, 669
BseXI	GCAGC	3 cut(s)	126, 383, 806
BshFI	GGCC	1 cut(s)	330
BsiSI	CCGG	2 cut(s)	290, 725
BslFI	GGGAC	1 cut(s)	57
BslI	CCNNNNNNNGG	1 cut(s)	456
BsmAI	GTCTC	2 cut(s)	273, 379
BsmFI	GGGAC	1 cut(s)	57
BsmI	GAATGC	1 cut(s)	117
BsnI	GGCC	1 cut(s)	330
Bso31I	GGTCTC	2 cut(s)	273, 379
Bsp1286I	GDGCHC	1 cut(s)	138
Bsp143I	GATC	5 cut(s)	79, 415, 594, 744, 757
BspACI	CCGC	1 cut(s)	77
BspANI	GGCC	1 cut(s)	330
BspCNI	CTCAG	1 cut(s)	670
BspHI	TCATGA	1 cut(s)	424
BspLI	GGNNCC	2 cut(s)	45, 242
BspPI	GGATC	2 cut(s)	87, 423
BspTNI	GGTCTC	2 cut(s)	273, 379
BsrI	ACTGG	3 cut(s)	326, 450, 669
BssECI	CCNNGG	4 cut(s)	47, 290, 537, 684
BssMI	GATC	5 cut(s)	79, 415, 594, 744, 757
BssT1I	CCWWGG	1 cut(s)	47
Bst2UI	CCWGG	1 cut(s)	538
Bst6I	CTCTTC	3 cut(s)	146, 216, 405
BstC8I	GCNNGC	2 cut(s)	75, 161
BstDEI	CTNAG	5 cut(s)	24, 182, 253, 363, 657
BstKTI	GATC	5 cut(s)	82, 418, 597, 747, 760
BstMAI	GTCTC	2 cut(s)	273, 379
BstMBI	GATC	5 cut(s)	79, 415, 594, 744, 757
BstMWI	GCNNNNNNNGC	1 cut(s)	336
BstNI	CCWGG	1 cut(s)	538
BstSCI	CCNGG	2 cut(s)	289, 536
BstV1I	GCAGC	3 cut(s)	126, 383, 806
BstV2I	GAAGAC	2 cut(s)	16, 69
Bsu36I	CCTNAGG	1 cut(s)	657
BsuI	GTATCC	1 cut(s)	559
BsuRI	GGCC	1 cut(s)	330
BtsIMutI	CAGTG	1 cut(s)	457
Cac8I	GCNNGC	2 cut(s)	75, 161
CciI	TCATGA	1 cut(s)	424
Cfr13I	GGNCC	2 cut(s)	44, 226
Csp6I	GTAC	3 cut(s)	21, 600, 611
CspCI	CAANNNNNGTGG	2 cut(s)	127, 162
CviAII	CATG	2 cut(s)	95, 425
CviQI	GTAC	3 cut(s)	21, 600, 611
DdeI	CTNAG	5 cut(s)	24, 182, 253, 363, 657
DpnI	GATC	5 cut(s)	81, 417, 596, 746, 759
DpnII	GATC	5 cut(s)	79, 415, 594, 744, 757
EaeI	YGGCCR	1 cut(s)	328
Eam1104I	CTCTTC	3 cut(s)	146, 216, 405
EarI	CTCTTC	3 cut(s)	146, 216, 405
Eco130I	CCWWGG	1 cut(s)	47
Eco24I	GRGCYC	1 cut(s)	138
Eco31I	GGTCTC	2 cut(s)	273, 379
Eco47I	GGWCC	2 cut(s)	44, 226
Eco57I	CTGAAG	2 cut(s)	78, 699
Eco81I	CCTNAGG	1 cut(s)	657
EcoO109I	RGGNCCY	2 cut(s)	44, 226
EcoRI	GAATTC	1 cut(s)	285
EcoRII	CCWGG	1 cut(s)	536
EcoT14I	CCWWGG	1 cut(s)	47
EcoT38I	GRGCYC	1 cut(s)	138
ErhI	CCWWGG	1 cut(s)	47
FaeI	CATG	2 cut(s)	98, 428
FaiI	YATR	9 cut(s)	84, 96, 194, 246, 383, 426, 593, 707, 842
FaqI	GGGAC	1 cut(s)	57
FatI	CATG	2 cut(s)	94, 424
FbaI	TGATCA	1 cut(s)	594
Fnu4HI	GCNGC	3 cut(s)	115, 372, 795
FriOI	GRGCYC	1 cut(s)	138
Fsp4HI	GCNGC	3 cut(s)	115, 372, 795
GluI	GCNGC	3 cut(s)	115, 372, 795
HaeIII	GGCC	1 cut(s)	330
HapII	CCGG	2 cut(s)	290, 725
Hin1II	CATG	2 cut(s)	98, 428
HinfI	GANTC	6 cut(s)	428, 440, 446, 506, 767, 806
HpaII	CCGG	2 cut(s)	290, 725
Hpy166II	GTNNAC	1 cut(s)	37
Hpy188I	TCNGA	7 cut(s)	394, 445, 514, 556, 648, 772, 779
Hpy188III	TCNNGA	4 cut(s)	139, 313, 425, 563
Hpy8I	GTNNAC	1 cut(s)	37
Hpy99I	CGWCG	1 cut(s)	398
HpyAV	CCTTC	2 cut(s)	449, 623
HpyCH4V	TGCA	4 cut(s)	159, 339, 371, 815
HpyF10VI	GCNNNNNNNGC	1 cut(s)	336
HpyF3I	CTNAG	5 cut(s)	24, 182, 253, 363, 657
Hsp92II	CATG	2 cut(s)	98, 428
Ksp22I	TGATCA	1 cut(s)	594
Kzo9I	GATC	5 cut(s)	79, 415, 594, 744, 757
LmnI	GCTCC	2 cut(s)	111, 246
Lsp1109I	GCAGC	3 cut(s)	126, 383, 806
LweI	GCATC	1 cut(s)	60
MalI	GATC	5 cut(s)	81, 417, 596, 746, 759
MboI	GATC	5 cut(s)	79, 415, 594, 744, 757
MhlI	GDGCHC	1 cut(s)	138
MluCI	AATT	5 cut(s)	175, 285, 642, 828, 844
MlyI	GAGTC	2 cut(s)	422, 800
MmeI	TCCRAC	2 cut(s)	417, 534
MseI	TTAA	1 cut(s)	847
MslI	CAYNNNNRTG	1 cut(s)	423
MspA1I	CMGCKG	2 cut(s)	56, 352
MspI	CCGG	2 cut(s)	290, 725
MspR9I	CCNGG	2 cut(s)	291, 538
Mva1269I	GAATGC	1 cut(s)	117
MvaI	CCWGG	1 cut(s)	538
MwoI	GCNNNNNNNGC	1 cut(s)	336
NciI	CCSGG	1 cut(s)	291
NdeII	GATC	5 cut(s)	79, 415, 594, 744, 757
NlaIII	CATG	2 cut(s)	98, 428
NlaIV	GGNNCC	2 cut(s)	45, 242
NmeAIII	GCCGAG	1 cut(s)	709
PagI	TCATGA	1 cut(s)	424
PctI	GAATGC	1 cut(s)	117
PfeI	GAWTC	4 cut(s)	440, 446, 506, 767
PflFI	GACNNNGTC	1 cut(s)	398
PkrI	GCNGC	3 cut(s)	116, 373, 796
PleI	GAGTC	2 cut(s)	422, 800
PpsI	GAGTC	2 cut(s)	422, 800
PpuMI	RGGWCCY	2 cut(s)	44, 226
Psp5II	RGGWCCY	2 cut(s)	44, 226
Psp6I	CCWGG	1 cut(s)	536
PspGI	CCWGG	1 cut(s)	536
PspN4I	GGNNCC	2 cut(s)	45, 242
PspPI	GGNCC	2 cut(s)	44, 226
PspPPI	RGGWCCY	2 cut(s)	44, 226
PsrI	GAACNNNNNNTAC	2 cut(s)	603, 635
PsyI	GACNNNGTC	1 cut(s)	398
PvuII	CAGCTG	2 cut(s)	56, 352
RsaI	GTAC	3 cut(s)	22, 601, 612
RsaNI	GTAC	3 cut(s)	21, 600, 611
RseI	CAYNNNNRTG	1 cut(s)	423
SaqAI	TTAA	1 cut(s)	847
SatI	GCNGC	3 cut(s)	115, 372, 795
Sau3AI	GATC	5 cut(s)	79, 415, 594, 744, 757
Sau96I	GGNCC	2 cut(s)	44, 226
ScaI	AGTACT	1 cut(s)	601
SchI	GAGTC	2 cut(s)	422, 800
ScrFI	CCNGG	2 cut(s)	291, 538
SduI	GDGCHC	1 cut(s)	138
SfaNI	GCATC	1 cut(s)	60
SinI	GGWCC	2 cut(s)	44, 226
SmiMI	CAYNNNNRTG	1 cut(s)	423
SmlI	CTYRAG	1 cut(s)	137
SmoI	CTYRAG	1 cut(s)	137
Sse9I	AATT	5 cut(s)	175, 285, 642, 828, 844
SsiI	CCGC	1 cut(s)	77
StyD4I	CCNGG	2 cut(s)	289, 536
StyI	CCWWGG	1 cut(s)	47
TaqII	GACCGA	1 cut(s)	202
TasI	AATT	5 cut(s)	175, 285, 642, 828, 844
TatI	WGTACW	2 cut(s)	20, 599
TfiI	GAWTC	4 cut(s)	440, 446, 506, 767
Tru1I	TTAA	1 cut(s)	847
Tru9I	TTAA	1 cut(s)	847
TscAI	CASTG	1 cut(s)	457
TseI	GCWGC	3 cut(s)	114, 371, 794
TspDTI	ATGAA	5 cut(s)	321, 465, 498, 711, 722
TspGWI	ACGGA	2 cut(s)	512, 818
TspRI	CASTG	1 cut(s)	457
Tth111I	GACNNNGTC	1 cut(s)	398
VpaK11BI	GGWCC	2 cut(s)	44, 226
XapI	RAATTY	3 cut(s)	285, 642, 828
ZrmI	AGTACT	1 cut(s)	601

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.