Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0016271

Physical Location & Seq

Genomic Coordinates Forward (+)

5606131 .. 5607708

Gene Structure 1578 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1070800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGGGAAGAAATCCTTGTTGTTCCAAGGAAGGAGTGAAGAGAGGACCATGGACTGCTCTTGAAGACAAAATGCTTGCAGATTACATCCAAGCACACGGTGAAGGAAAATGGAGCAATGTTCCAAAACAAGCAGGGCTGAAGAGATGTGGGAAGAGTTGTAGGCTGCGGTGGCTGAATTATCTGAGACCAAGCATCAAGGAAGGCGACATTACAAAAGATGAAGAAGACCTCATCATCAGACTCCACAAACTCTTAGGCAACAGATGGTCTCTAATAGCAGGGAGAATTCCAGGGCGAACAAAAGATGAAATCGAGAATTACTGGCACAGTAATTTATGTAAGAAACAGCATGAGGATCATATATTATCATGTAGACCCTCCGCCTCCACTGAGATCGCAGACACAGTACAACAGTCAAAAGTTGAAGTGCAATTAGAAAATGACCCCAGTTGCAATAATAATTTTGCATTGGGGTCCTCCATGCTTTGTAATTTAACTGACATCATGGCAGAAGAGTCTGAAACAAGTAGTGGGTCATTACTGTCAGCATCAAAGTCGAGGGAAGAAGATCGTTCCAGCTGCTGGGAAAATATTTTGATGGAAGACTTCCACACGAGGGAGATGAGCCTCTCTGAGTTTCTGGATACTGACTTTACAAAGCTAAGCAATGTGTTTGGGTTTGGGATGTGTGATGTCATGAGCAATGAGGTGTTACTTGAAGGAGAATCTGGCTATGGATTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006355 GO:0006357 GO:0006725 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009058 GO:0009611 GO:0009628 GO:0009651 GO:0009698 GO:0009699 GO:0009719 GO:0009725 GO:0009737 GO:0009751 GO:0009800 GO:0009803 GO:0009889 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0014070 GO:0016053 GO:0019219 GO:0019222 GO:0019438 GO:0019748 GO:0019752 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0032787 GO:0033993 GO:0042221 GO:0042493 GO:0042537 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0044550 GO:0046394 GO:0046677 GO:0048519 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0072330 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

248

Amino Acids

27.91

Weight (kDa)

5.27

Isoelectric Point (pI)

57.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	14 - 61	6.3e-16	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	17 - 75	7.1e-11	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	68 - 112	1.5e-13	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	71 - 115	6.4e-07	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0016271)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g31090
malus_domestica	MD08G1070800.v1.1
prunus_persica	Prupe.1G405300_v2.0.a1
pyrus_communis	pycom08g05860
rosa_chinensis	RchiOBHm_Chr6g0311701
rosa_laevigata	RLG00000010381
rosa_multiflora	Rmu_sc0002888.1_g000020
rosa_roxburghii	Rroxscaffold_7G00157380
rosa_rugosa	Rorug06G0390900 Rorug06G0390900
rosa_samantha	Rh6AG506200 Rh6BG516900 Rh6CG522800 Rh6DG508600
rosa_wichuraiana	Rw6G044040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	582
AccI	GTMKAC	1 cut(s)	373
AciI	CCGC	2 cut(s)	166, 381
AclWI	GGATC	1 cut(s)	363
AcsI	RAATTY	1 cut(s)	285
AcuI	CTGAAG	1 cut(s)	158
AdeI	CACNNNGTG	1 cut(s)	98
AfaI	GTAC	1 cut(s)	408
AfiI	CCNNNNNNNGG	2 cut(s)	582, 616
AgsI	TTSAA	3 cut(s)	62, 425, 719
AjnI	CCWGG	1 cut(s)	289
AluBI	AGCT	2 cut(s)	579, 661
AluI	AGCT	2 cut(s)	579, 661
Alw26I	GTCTC	2 cut(s)	178, 273
AlwI	GGATC	1 cut(s)	363
AlwNI	CAGNNNCTG	1 cut(s)	582
ApeKI	GCWGC	2 cut(s)	163, 579
ApoI	RAATTY	1 cut(s)	285
AspS9I	GGNCC	2 cut(s)	44, 474
AsuHPI	GGTGA	1 cut(s)	110
AvaII	GGWCC	2 cut(s)	44, 474
BauI	CACGAG	1 cut(s)	613
BbsI	GAAGAC	3 cut(s)	69, 231, 609
BbvI	GCAGC	2 cut(s)	150, 566
BccI	CCATC	2 cut(s)	258, 592
BcgI	CGANNNNNNTGC	2 cut(s)	537, 571
BciT130I	CCWGG	1 cut(s)	291
BciVI	GTATCC	1 cut(s)	637
BcoDI	GTCTC	2 cut(s)	178, 273
BfuI	GTATCC	1 cut(s)	637
BisI	GCNGC	2 cut(s)	164, 580
BlpI	GCTNAGC	1 cut(s)	662
BlsI	GCNGC	2 cut(s)	165, 581
Bme1390I	CCNGG	1 cut(s)	291
Bme18I	GGWCC	2 cut(s)	44, 474
BmgT120I	GGNCC	2 cut(s)	44, 474
BmiI	GGNNCC	1 cut(s)	475
BmrFI	CCNGG	1 cut(s)	291
BmrI	ACTGGG	1 cut(s)	441
BmsI	GCATC	2 cut(s)	201, 557
BmuI	ACTGGG	1 cut(s)	441
BpiI	GAAGAC	3 cut(s)	69, 231, 609
Bpu1102I	GCTNAGC	1 cut(s)	662
BsaI	GGTCTC	2 cut(s)	178, 273
BsaJI	CCNNGG	3 cut(s)	24, 47, 290
Bsc4I	CCNNNNNNNGG	2 cut(s)	582, 616
Bse1I	ACTGG	2 cut(s)	326, 447
Bse3DI	GCAATG	3 cut(s)	121, 673, 709
BseBI	CCWGG	1 cut(s)	291
BseDI	CCNNGG	3 cut(s)	24, 47, 290
BseGI	GGATG	2 cut(s)	84, 690
BseLI	CCNNNNNNNGG	2 cut(s)	582, 616
BseMI	GCAATG	3 cut(s)	121, 673, 709
BseMII	CTCAG	3 cut(s)	173, 381, 624
BseNI	ACTGG	2 cut(s)	326, 447
BseXI	GCAGC	2 cut(s)	150, 566
BseYI	CCCAGC	1 cut(s)	582
BslI	CCNNNNNNNGG	2 cut(s)	582, 616
BsmAI	GTCTC	2 cut(s)	178, 273
Bso31I	GGTCTC	2 cut(s)	178, 273
Bsp143I	GATC	3 cut(s)	355, 393, 568
Bsp1720I	GCTNAGC	1 cut(s)	662
Bsp19I	CCATGG	1 cut(s)	47
BspACI	CCGC	2 cut(s)	166, 381
BspCNI	CTCAG	3 cut(s)	174, 382, 625
BspHI	TCATGA	1 cut(s)	696
BspLI	GGNNCC	1 cut(s)	475
BspPI	GGATC	1 cut(s)	363
BspTNI	GGTCTC	2 cut(s)	178, 273
BsrDI	GCAATG	3 cut(s)	121, 673, 709
BsrI	ACTGG	2 cut(s)	326, 447
BssECI	CCNNGG	3 cut(s)	24, 47, 290
BssMI	GATC	3 cut(s)	355, 393, 568
BssSI	CACGAG	1 cut(s)	613
BssT1I	CCWWGG	2 cut(s)	24, 47
Bst2BI	CACGAG	1 cut(s)	613
Bst2UI	CCWGG	1 cut(s)	291
Bst4CI	ACNGT	5 cut(s)	98, 329, 406, 414, 543
Bst6I	CTCTTC	4 cut(s)	32, 134, 146, 507
BstC8I	GCNNGC	1 cut(s)	75
BstDEI	CTNAG	5 cut(s)	182, 253, 390, 633, 662
BstDSI	CCRYGG	1 cut(s)	47
BstF5I	GGATG	2 cut(s)	84, 690
BstKTI	GATC	3 cut(s)	358, 396, 571
BstMAI	GTCTC	2 cut(s)	178, 273
BstMBI	GATC	3 cut(s)	355, 393, 568
BstMWI	GCNNNNNNNGC	1 cut(s)	169
BstNI	CCWGG	1 cut(s)	291
BstSCI	CCNGG	1 cut(s)	289
BstV1I	GCAGC	2 cut(s)	150, 566
BstV2I	GAAGAC	3 cut(s)	69, 231, 609
BsuI	GTATCC	1 cut(s)	637
BtgI	CCRYGG	1 cut(s)	47
BtsCI	GGATG	2 cut(s)	84, 690
BtsIMutI	CAGTG	1 cut(s)	387
Cac8I	GCNNGC	1 cut(s)	75
CaiI	CAGNNNCTG	1 cut(s)	582
CciI	TCATGA	1 cut(s)	696
Cfr13I	GGNCC	2 cut(s)	44, 474
Csp6I	GTAC	1 cut(s)	407
CviAII	CATG	6 cut(s)	48, 350, 369, 481, 505, 697
CviJI	RGCY	7 cut(s)	136, 163, 172, 579, 627, 661, 732
CviKI_1	RGCY	7 cut(s)	136, 163, 172, 579, 627, 661, 732
CviQI	GTAC	1 cut(s)	407
DdeI	CTNAG	5 cut(s)	182, 253, 390, 633, 662
DpnI	GATC	3 cut(s)	357, 395, 570
DpnII	GATC	3 cut(s)	355, 393, 568
DraIII	CACNNNGTG	1 cut(s)	98
Eam1104I	CTCTTC	4 cut(s)	32, 134, 146, 507
EarI	CTCTTC	4 cut(s)	32, 134, 146, 507
EciI	GGCGGA	1 cut(s)	370
Eco130I	CCWWGG	2 cut(s)	24, 47
Eco31I	GGTCTC	2 cut(s)	178, 273
Eco47I	GGWCC	2 cut(s)	44, 474
Eco57I	CTGAAG	1 cut(s)	158
EcoO109I	RGGNCCY	1 cut(s)	474
EcoRI	GAATTC	1 cut(s)	285
EcoRII	CCWGG	1 cut(s)	289
EcoT14I	CCWWGG	2 cut(s)	24, 47
ErhI	CCWWGG	2 cut(s)	24, 47
FaeI	CATG	6 cut(s)	51, 353, 372, 484, 508, 700
FalI	AAGNNNNNCTT	1 cut(s)	30
FatI	CATG	6 cut(s)	47, 349, 368, 480, 504, 696
FblI	GTMKAC	1 cut(s)	373
Fnu4HI	GCNGC	2 cut(s)	164, 580
FokI	GGATG	2 cut(s)	71, 697
Fsp4HI	GCNGC	2 cut(s)	164, 580
GluI	GCNGC	2 cut(s)	164, 580
GsaI	CCCAGC	1 cut(s)	586
Hin1II	CATG	6 cut(s)	51, 353, 372, 484, 508, 700
HinfI	GANTC	4 cut(s)	240, 515, 725, 738
HphI	GGTGA	1 cut(s)	110
Hpy166II	GTNNAC	1 cut(s)	374
Hpy188I	TCNGA	5 cut(s)	183, 239, 520, 634, 743
Hpy188III	TCNNGA	4 cut(s)	59, 313, 641, 697
Hpy8I	GTNNAC	1 cut(s)	374
HpyAV	CCTTC	4 cut(s)	23, 95, 194, 713
HpyCH4III	ACNGT	5 cut(s)	98, 329, 406, 414, 543
HpyCH4V	TGCA	4 cut(s)	77, 430, 453, 467
HpyF10VI	GCNNNNNNNGC	1 cut(s)	169
HpyF3I	CTNAG	5 cut(s)	182, 253, 390, 633, 662
Hsp92II	CATG	6 cut(s)	51, 353, 372, 484, 508, 700
Kzo9I	GATC	3 cut(s)	355, 393, 568
LmnI	GCTCC	1 cut(s)	111
Lsp1109I	GCAGC	2 cut(s)	150, 566
LweI	GCATC	2 cut(s)	201, 557
MaeIII	GTNAC	1 cut(s)	711
MalI	GATC	3 cut(s)	357, 395, 570
MboI	GATC	3 cut(s)	355, 393, 568
MluCI	AATT	7 cut(s)	175, 285, 316, 331, 431, 460, 490
MlyI	GAGTC	2 cut(s)	234, 524
MseI	TTAA	1 cut(s)	494
MspA1I	CMGCKG	1 cut(s)	579
MspR9I	CCNGG	1 cut(s)	291
MvaI	CCWGG	1 cut(s)	291
MwoI	GCNNNNNNNGC	1 cut(s)	169
NcoI	CCATGG	1 cut(s)	47
NdeII	GATC	3 cut(s)	355, 393, 568
NlaIII	CATG	6 cut(s)	51, 353, 372, 484, 508, 700
NlaIV	GGNNCC	1 cut(s)	475
PagI	TCATGA	1 cut(s)	696
PfeI	GAWTC	2 cut(s)	725, 738
PflMI	CCANNNNNTGG	1 cut(s)	582
PkrI	GCNGC	2 cut(s)	165, 581
PleI	GAGTC	2 cut(s)	234, 523
PpsI	GAGTC	2 cut(s)	234, 523
PpuMI	RGGWCCY	1 cut(s)	474
Psp5II	RGGWCCY	1 cut(s)	474
Psp6I	CCWGG	1 cut(s)	289
PspFI	CCCAGC	1 cut(s)	582
PspGI	CCWGG	1 cut(s)	289
PspN4I	GGNNCC	1 cut(s)	475
PspPI	GGNCC	2 cut(s)	44, 474
PspPPI	RGGWCCY	1 cut(s)	474
PstNI	CAGNNNCTG	1 cut(s)	582
PvuII	CAGCTG	1 cut(s)	579
RsaI	GTAC	1 cut(s)	408
RsaNI	GTAC	1 cut(s)	407
SaqAI	TTAA	1 cut(s)	494
SatI	GCNGC	2 cut(s)	164, 580
Sau3AI	GATC	3 cut(s)	355, 393, 568
Sau96I	GGNCC	2 cut(s)	44, 474
SchI	GAGTC	2 cut(s)	234, 524
ScrFI	CCNGG	1 cut(s)	291
SetI	ASST	4 cut(s)	231, 581, 663, 711
SfaNI	GCATC	2 cut(s)	201, 557
SinI	GGWCC	2 cut(s)	44, 474
Sse9I	AATT	7 cut(s)	175, 285, 316, 331, 431, 460, 490
SsiI	CCGC	2 cut(s)	166, 381
SspI	AATATT	1 cut(s)	592
StyD4I	CCNGG	1 cut(s)	289
StyI	CCWWGG	2 cut(s)	24, 47
TaaI	ACNGT	5 cut(s)	98, 329, 406, 414, 543
TaqI	TCGA	2 cut(s)	312, 557
TasI	AATT	7 cut(s)	175, 285, 316, 331, 431, 460, 490
TatI	WGTACW	1 cut(s)	406
TfiI	GAWTC	2 cut(s)	725, 738
Tru1I	TTAA	1 cut(s)	494
Tru9I	TTAA	1 cut(s)	494
TscAI	CASTG	1 cut(s)	394
TseI	GCWGC	2 cut(s)	163, 579
TspDTI	ATGAA	2 cut(s)	234, 321
TspRI	CASTG	1 cut(s)	394
Van91I	CCANNNNNTGG	1 cut(s)	582
VpaK11BI	GGWCC	2 cut(s)	44, 474
XapI	RAATTY	1 cut(s)	285
XmiI	GTMKAC	1 cut(s)	373

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.