Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0016271

Physical Location & Seq

Genomic Coordinates Forward (+)

4435010 .. 4436164

Gene Structure 1155 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g05860.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGGGAAGAAATCCTTGTTGTTCCAAGGAAGGAGTGAAGAGAGGACCATGGACTGCTCTTGAAGACAAAATGCTTGCAGATTACATCCAAGCACACGGTGAAGGAAAATGGAGCAATGTTCCAAAACAAGCAGGGCTGAAGAGATGTGGGAAGAGTTGTAGGCTTCGGTGGCTGAATTATCTGAGACCAAGCATCAAGGGAGGCGACATTACAAAGGATGAAGAAGACCTCATCATCAGACTCCACAAACTCTTAGGCAACAGATGGTCTCTAATAGCAGGGAGAATTCCAGGGCGAACAAAAGATGAAATCGAGAATTACTGGCACTGTAAATTATGTAAGAAACAGCAAGAGGATCATATATTATCATGTAGACCCTCCACCTCCACTGAGATCGCAGACACAGTACAACAGTCAAAAGTTGAAGTGCACTTAGAAAATGACCCCAGCTGCAATAATAATTTTGCATTGGGGTCCTCCATGCTTTGTGATTTAACTGACATCATGGCAGAAGAGTCTGAAACAAGTAGTGGGTCATTACTATCAGCATCAAAGTCGAGGGAAGAAGATCGTTCCAGCTGCTGGGAAAATATTTTGATGGAAGACTTCCACACGAGGGAGATGAGCCTCTCTGAGTTTCTGGATACTGACTTTACAAAGCTGAGCAATGTGTTTGGGTTTGGGATGTGTGATGTCATGAGTAATGAGGTGTTACTTGAAGGAGAATCTGGCTATGGATTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006355 GO:0006357 GO:0006629 GO:0006631 GO:0006633 GO:0006725 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009628 GO:0009698 GO:0009699 GO:0009889 GO:0009987 GO:0010023 GO:0010468 GO:0010556 GO:0016053 GO:0017144 GO:0018130 GO:0018958 GO:0019219 GO:0019222 GO:0019438 GO:0019748 GO:0019752 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0032787 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0044550 GO:0046189 GO:0046394 GO:0046483 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0072330 GO:0080090 GO:0097159 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901615 GO:1901617 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

248

Amino Acids

27.9

Weight (kDa)

5.37

Isoelectric Point (pI)

59.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	14 - 61	6.3e-16	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	17 - 75	1.3e-10	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	69 - 109	9.9e-13	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	71 - 117	1.3e-07	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016271)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g31090
malus_domestica	MD08G1070800.v1.1
prunus_persica	Prupe.1G405300_v2.0.a1
pyrus_communis	pycom08g05860
rosa_chinensis	RchiOBHm_Chr6g0311701
rosa_laevigata	RLG00000010381
rosa_multiflora	Rmu_sc0002888.1_g000020
rosa_roxburghii	Rroxscaffold_7G00157380
rosa_rugosa	Rorug06G0390900 Rorug06G0390900
rosa_samantha	Rh6AG506200 Rh6BG516900 Rh6CG522800 Rh6DG508600
rosa_wichuraiana	Rw6G044040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	582
AccI	GTMKAC	1 cut(s)	373
AclWI	GGATC	1 cut(s)	363
AcsI	RAATTY	1 cut(s)	285
AcuI	CTGAAG	1 cut(s)	158
AdeI	CACNNNGTG	1 cut(s)	98
AfaI	GTAC	1 cut(s)	408
AfiI	CCNNNNNNNGG	2 cut(s)	582, 616
AgsI	TTSAA	3 cut(s)	62, 425, 719
AjnI	CCWGG	1 cut(s)	289
AluBI	AGCT	3 cut(s)	450, 579, 661
AluI	AGCT	3 cut(s)	450, 579, 661
Alw21I	GWGCWC	1 cut(s)	432
Alw26I	GTCTC	2 cut(s)	178, 273
Alw44I	GTGCAC	1 cut(s)	428
AlwI	GGATC	1 cut(s)	363
AlwNI	CAGNNNCTG	1 cut(s)	582
ApaLI	GTGCAC	1 cut(s)	428
ApeKI	GCWGC	2 cut(s)	450, 579
ApoI	RAATTY	1 cut(s)	285
AspS9I	GGNCC	2 cut(s)	44, 474
AsuHPI	GGTGA	1 cut(s)	110
AvaII	GGWCC	2 cut(s)	44, 474
BaeGI	GKGCMC	1 cut(s)	432
BauI	CACGAG	1 cut(s)	613
BbsI	GAAGAC	3 cut(s)	69, 231, 609
Bbv12I	GWGCWC	1 cut(s)	432
BbvI	GCAGC	2 cut(s)	437, 566
BccI	CCATC	2 cut(s)	258, 592
BcgI	CGANNNNNNTGC	2 cut(s)	537, 571
BciT130I	CCWGG	1 cut(s)	291
BciVI	GTATCC	1 cut(s)	637
BcoDI	GTCTC	2 cut(s)	178, 273
BfuI	GTATCC	1 cut(s)	637
BisI	GCNGC	2 cut(s)	451, 580
BlpI	GCTNAGC	1 cut(s)	662
BlsI	GCNGC	2 cut(s)	452, 581
Bme1390I	CCNGG	1 cut(s)	291
Bme18I	GGWCC	2 cut(s)	44, 474
BmgT120I	GGNCC	2 cut(s)	44, 474
BmiI	GGNNCC	1 cut(s)	475
BmrFI	CCNGG	1 cut(s)	291
BmsI	GCATC	2 cut(s)	201, 557
BpiI	GAAGAC	3 cut(s)	69, 231, 609
Bpu1102I	GCTNAGC	1 cut(s)	662
BsaI	GGTCTC	2 cut(s)	178, 273
BsaJI	CCNNGG	3 cut(s)	24, 47, 290
Bsc4I	CCNNNNNNNGG	2 cut(s)	582, 616
Bse1I	ACTGG	1 cut(s)	326
Bse3DI	GCAATG	2 cut(s)	121, 673
BseBI	CCWGG	1 cut(s)	291
BseDI	CCNNGG	3 cut(s)	24, 47, 290
BseGI	GGATG	3 cut(s)	84, 223, 690
BseLI	CCNNNNNNNGG	2 cut(s)	582, 616
BseMI	GCAATG	2 cut(s)	121, 673
BseMII	CTCAG	4 cut(s)	173, 381, 624, 653
BseNI	ACTGG	1 cut(s)	326
BseSI	GKGCMC	1 cut(s)	432
BseXI	GCAGC	2 cut(s)	437, 566
BseYI	CCCAGC	2 cut(s)	446, 582
BsiHKAI	GWGCWC	1 cut(s)	432
BslI	CCNNNNNNNGG	2 cut(s)	582, 616
BsmAI	GTCTC	2 cut(s)	178, 273
Bso31I	GGTCTC	2 cut(s)	178, 273
Bsp1286I	GDGCHC	1 cut(s)	432
Bsp143I	GATC	3 cut(s)	355, 393, 568
Bsp1720I	GCTNAGC	1 cut(s)	662
Bsp19I	CCATGG	1 cut(s)	47
BspCNI	CTCAG	4 cut(s)	174, 382, 625, 654
BspHI	TCATGA	1 cut(s)	696
BspLI	GGNNCC	1 cut(s)	475
BspPI	GGATC	1 cut(s)	363
BspTNI	GGTCTC	2 cut(s)	178, 273
BsrDI	GCAATG	2 cut(s)	121, 673
BsrI	ACTGG	1 cut(s)	326
BssECI	CCNNGG	3 cut(s)	24, 47, 290
BssMI	GATC	3 cut(s)	355, 393, 568
BssSI	CACGAG	1 cut(s)	613
BssT1I	CCWWGG	2 cut(s)	24, 47
Bst2BI	CACGAG	1 cut(s)	613
Bst2UI	CCWGG	1 cut(s)	291
Bst4CI	ACNGT	4 cut(s)	98, 329, 406, 414
Bst6I	CTCTTC	4 cut(s)	32, 134, 146, 507
BstC8I	GCNNGC	1 cut(s)	75
BstDEI	CTNAG	6 cut(s)	182, 253, 390, 433, 633, 662
BstDSI	CCRYGG	1 cut(s)	47
BstF5I	GGATG	3 cut(s)	84, 223, 690
BstKTI	GATC	3 cut(s)	358, 396, 571
BstMAI	GTCTC	2 cut(s)	178, 273
BstMBI	GATC	3 cut(s)	355, 393, 568
BstMWI	GCNNNNNNNGC	1 cut(s)	169
BstNI	CCWGG	1 cut(s)	291
BstSCI	CCNGG	1 cut(s)	289
BstSLI	GKGCMC	1 cut(s)	432
BstV1I	GCAGC	2 cut(s)	437, 566
BstV2I	GAAGAC	3 cut(s)	69, 231, 609
BsuI	GTATCC	1 cut(s)	637
BtgI	CCRYGG	1 cut(s)	47
BtsCI	GGATG	3 cut(s)	84, 223, 690
BtsIMutI	CAGTG	2 cut(s)	325, 387
Cac8I	GCNNGC	1 cut(s)	75
CaiI	CAGNNNCTG	1 cut(s)	582
CciI	TCATGA	1 cut(s)	696
Cfr13I	GGNCC	2 cut(s)	44, 474
Csp6I	GTAC	1 cut(s)	407
CviAII	CATG	5 cut(s)	48, 369, 481, 505, 697
CviJI	RGCY	8 cut(s)	136, 163, 172, 450, 579, 627, 661, 732
CviKI_1	RGCY	8 cut(s)	136, 163, 172, 450, 579, 627, 661, 732
CviQI	GTAC	1 cut(s)	407
DdeI	CTNAG	6 cut(s)	182, 253, 390, 433, 633, 662
DpnI	GATC	3 cut(s)	357, 395, 570
DpnII	GATC	3 cut(s)	355, 393, 568
DraIII	CACNNNGTG	1 cut(s)	98
Eam1104I	CTCTTC	4 cut(s)	32, 134, 146, 507
EarI	CTCTTC	4 cut(s)	32, 134, 146, 507
Eco130I	CCWWGG	2 cut(s)	24, 47
Eco31I	GGTCTC	2 cut(s)	178, 273
Eco47I	GGWCC	2 cut(s)	44, 474
Eco57I	CTGAAG	1 cut(s)	158
EcoO109I	RGGNCCY	1 cut(s)	474
EcoRI	GAATTC	1 cut(s)	285
EcoRII	CCWGG	1 cut(s)	289
EcoT14I	CCWWGG	2 cut(s)	24, 47
ErhI	CCWWGG	2 cut(s)	24, 47
FaeI	CATG	5 cut(s)	51, 372, 484, 508, 700
FaiI	YATR	9 cut(s)	49, 337, 360, 362, 370, 482, 506, 698, 735
FalI	AAGNNNNNCTT	1 cut(s)	30
FatI	CATG	5 cut(s)	47, 368, 480, 504, 696
FblI	GTMKAC	1 cut(s)	373
Fnu4HI	GCNGC	2 cut(s)	451, 580
FokI	GGATG	3 cut(s)	71, 230, 697
Fsp4HI	GCNGC	2 cut(s)	451, 580
GluI	GCNGC	2 cut(s)	451, 580
GsaI	CCCAGC	2 cut(s)	450, 586
Hin1II	CATG	5 cut(s)	51, 372, 484, 508, 700
HinfI	GANTC	4 cut(s)	240, 515, 725, 738
HphI	GGTGA	1 cut(s)	110
Hpy166II	GTNNAC	2 cut(s)	374, 430
Hpy188I	TCNGA	5 cut(s)	183, 239, 520, 634, 743
Hpy188III	TCNNGA	4 cut(s)	59, 313, 641, 697
Hpy8I	GTNNAC	2 cut(s)	374, 430
HpyAV	CCTTC	3 cut(s)	23, 95, 713
HpyCH4III	ACNGT	4 cut(s)	98, 329, 406, 414
HpyCH4V	TGCA	4 cut(s)	77, 430, 453, 467
HpyF10VI	GCNNNNNNNGC	1 cut(s)	169
HpyF3I	CTNAG	6 cut(s)	182, 253, 390, 433, 633, 662
Hsp92II	CATG	5 cut(s)	51, 372, 484, 508, 700
Kzo9I	GATC	3 cut(s)	355, 393, 568
LmnI	GCTCC	1 cut(s)	111
Lsp1109I	GCAGC	2 cut(s)	437, 566
LweI	GCATC	2 cut(s)	201, 557
MaeIII	GTNAC	1 cut(s)	711
MalI	GATC	3 cut(s)	357, 395, 570
MboI	GATC	3 cut(s)	355, 393, 568
MhlI	GDGCHC	1 cut(s)	432
MluCI	AATT	5 cut(s)	175, 285, 316, 332, 460
MlyI	GAGTC	2 cut(s)	234, 524
MseI	TTAA	1 cut(s)	494
MspA1I	CMGCKG	2 cut(s)	450, 579
MspR9I	CCNGG	1 cut(s)	291
MvaI	CCWGG	1 cut(s)	291
MwoI	GCNNNNNNNGC	1 cut(s)	169
NcoI	CCATGG	1 cut(s)	47
NdeII	GATC	3 cut(s)	355, 393, 568
NlaIII	CATG	5 cut(s)	51, 372, 484, 508, 700
NlaIV	GGNNCC	1 cut(s)	475
PagI	TCATGA	1 cut(s)	696
PfeI	GAWTC	2 cut(s)	725, 738
PflMI	CCANNNNNTGG	1 cut(s)	582
PkrI	GCNGC	2 cut(s)	452, 581
PleI	GAGTC	2 cut(s)	234, 523
PpsI	GAGTC	2 cut(s)	234, 523
PpuMI	RGGWCCY	1 cut(s)	474
Psp5II	RGGWCCY	1 cut(s)	474
Psp6I	CCWGG	1 cut(s)	289
PspFI	CCCAGC	2 cut(s)	446, 582
PspGI	CCWGG	1 cut(s)	289
PspN4I	GGNNCC	1 cut(s)	475
PspPI	GGNCC	2 cut(s)	44, 474
PspPPI	RGGWCCY	1 cut(s)	474
PstNI	CAGNNNCTG	1 cut(s)	582
PvuII	CAGCTG	2 cut(s)	450, 579
RsaI	GTAC	1 cut(s)	408
RsaNI	GTAC	1 cut(s)	407
SaqAI	TTAA	1 cut(s)	494
SatI	GCNGC	2 cut(s)	451, 580
Sau3AI	GATC	3 cut(s)	355, 393, 568
Sau96I	GGNCC	2 cut(s)	44, 474
SchI	GAGTC	2 cut(s)	234, 524
ScrFI	CCNGG	1 cut(s)	291
SduI	GDGCHC	1 cut(s)	432
SetI	ASST	6 cut(s)	231, 386, 452, 581, 663, 711
SfaNI	GCATC	2 cut(s)	201, 557
SinI	GGWCC	2 cut(s)	44, 474
Sse9I	AATT	5 cut(s)	175, 285, 316, 332, 460
SspI	AATATT	1 cut(s)	592
StyD4I	CCNGG	1 cut(s)	289
StyI	CCWWGG	2 cut(s)	24, 47
TaaI	ACNGT	4 cut(s)	98, 329, 406, 414
TaqI	TCGA	2 cut(s)	312, 557
TasI	AATT	5 cut(s)	175, 285, 316, 332, 460
TatI	WGTACW	1 cut(s)	406
TfiI	GAWTC	2 cut(s)	725, 738
Tru1I	TTAA	1 cut(s)	494
Tru9I	TTAA	1 cut(s)	494
TscAI	CASTG	2 cut(s)	332, 394
TseI	GCWGC	2 cut(s)	450, 579
TspDTI	ATGAA	2 cut(s)	234, 321
TspRI	CASTG	2 cut(s)	332, 394
Van91I	CCANNNNNTGG	1 cut(s)	582
VneI	GTGCAC	1 cut(s)	428
VpaK11BI	GGWCC	2 cut(s)	44, 474
XapI	RAATTY	1 cut(s)	285
XmiI	GTMKAC	1 cut(s)	373

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.