Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0016271

Physical Location & Seq

Genomic Coordinates Reverse (-)

23921954 .. 23923506

Gene Structure 1553 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g31090.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGGGGAGAAGACCTTGCTGTTCTAAGGAGGGAGTGAACAAGGGACCCTGGACAGCTGAAGAAGACAAGATGCTTGCGGATCATATCAAAGCTCATGGCGATCAAAACTGGAGTAGCATTCCTAAACAAACAGGGCTTAGGAGATGTGGGAAGAGTTGCAGGCTCCGGTGGTTGAATTATCTGAGACCGAATATAAAACGAGGCAACATTACACAAGAAGAAGAGGACCTAATCATTAGGCTCCATAAACTCTTAGGAAACAGATGGTCTCTTATAGCAGGAAGAATCCCAGGGCGAACAGACAATGAAATCAAGAACTACTGGAACAGCCACTTGTGTAAGAAGTCAGTAGAGCCGGAAATGTCTGAGGCTGCGGCAAAGAATATGAGACTCTCCGTCGACGAGGCGAAGGTTGAAGATCATTATCATAGTCTTGACTCCAAAATGGTACCAGAATCCAGTGAAGGGTCATTACTGTCTCATTCGTCTACTACGTCAACTACAACTGAGGAAAGTTCGTCGGATATTTTGATGGATTTTTACACCAGGGAGATAAGCCTTTCGGAGTTTCTAGATACCGACTTTACAAAGTTCAGCAGCATGATCAGTAGTGGTAAGGTAACAATGTTCCATGGAGAAGGGGCGGAACAGATTCAGAAACAGCTGCCTTATAATAGTTCCAGTCAAGCTGAAGCTAATGAGGAAGCACCTATGAATGTGGTAATATCGCGGGAAGTGGTGGACAACTTGATGAGCTGGGAAGATCAAAGTGATTCAGATTTCGGATATCAACTGTCTGCAGCTTTCACGGACTTTGTTGCAGTCGAAGAAGAATATTGGATTTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006355 GO:0006357 GO:0006725 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009058 GO:0009611 GO:0009628 GO:0009651 GO:0009698 GO:0009699 GO:0009719 GO:0009725 GO:0009737 GO:0009751 GO:0009800 GO:0009803 GO:0009889 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0014070 GO:0016053 GO:0019219 GO:0019222 GO:0019438 GO:0019748 GO:0019752 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0032787 GO:0033993 GO:0042221 GO:0042493 GO:0042537 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0044550 GO:0046394 GO:0046677 GO:0048519 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0072330 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

283

Amino Acids

32.05

Weight (kDa)

5.14

Isoelectric Point (pI)

62.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	14 - 61	1.8e-16	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	17 - 75	3e-14	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	67 - 112	1.8e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	71 - 115	3.1e-08	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016271)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g31090
malus_domestica	MD08G1070800.v1.1
prunus_persica	Prupe.1G405300_v2.0.a1
pyrus_communis	pycom08g05860
rosa_chinensis	RchiOBHm_Chr6g0311701
rosa_laevigata	RLG00000010381
rosa_multiflora	Rmu_sc0002888.1_g000020
rosa_roxburghii	Rroxscaffold_7G00157380
rosa_rugosa	Rorug06G0390900 Rorug06G0390900
rosa_samantha	Rh6AG506200 Rh6BG516900 Rh6CG522800 Rh6DG508600
rosa_wichuraiana	Rw6G044040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	672
Acc65I	GGTACC	1 cut(s)	448
AccB1I	GGYRCC	1 cut(s)	448
AccI	GTMKAC	2 cut(s)	399, 488
AccII	CGCG	1 cut(s)	730
AciI	CCGC	4 cut(s)	77, 374, 644, 730
AclWI	GGATC	1 cut(s)	87
AcuI	CTGAAG	2 cut(s)	78, 711
AfaI	GTAC	1 cut(s)	450
AfiI	CCNNNNNNNGG	1 cut(s)	465
AgsI	TTSAA	2 cut(s)	175, 416
AhdI	GACNNNNNGTC	1 cut(s)	395
AjnI	CCWGG	3 cut(s)	47, 289, 545
AluBI	AGCT	7 cut(s)	56, 92, 664, 689, 695, 756, 803
AluI	AGCT	7 cut(s)	56, 92, 664, 689, 695, 756, 803
Alw26I	GTCTC	4 cut(s)	178, 273, 382, 483
AlwI	GGATC	1 cut(s)	87
ApeKI	GCWGC	4 cut(s)	371, 597, 664, 800
Asp700I	GAANNNNTTC	1 cut(s)	651
Asp718I	GGTACC	1 cut(s)	448
AspS9I	GGNCC	2 cut(s)	44, 226
AvaII	GGWCC	2 cut(s)	44, 226
BanI	GGYRCC	1 cut(s)	448
BarI	GAAGNNNNNNTAC	2 cut(s)	456, 488
BbsI	GAAGAC	2 cut(s)	16, 69
BbvI	GCAGC	4 cut(s)	358, 609, 651, 812
BccI	CCATC	2 cut(s)	258, 526
BciT130I	CCWGG	3 cut(s)	49, 291, 547
BclI	TGATCA	1 cut(s)	603
BcoDI	GTCTC	4 cut(s)	178, 273, 382, 483
BfaI	CTAG	1 cut(s)	572
BfmI	CTRYAG	1 cut(s)	798
BisI	GCNGC	5 cut(s)	372, 375, 598, 665, 801
BlsI	GCNGC	5 cut(s)	373, 376, 599, 666, 802
Bme1390I	CCNGG	3 cut(s)	49, 291, 547
Bme18I	GGWCC	2 cut(s)	44, 226
BmeRI	GACNNNNNGTC	1 cut(s)	395
BmgT120I	GGNCC	2 cut(s)	44, 226
BmiI	GGNNCC	5 cut(s)	45, 46, 164, 242, 450
BmrFI	CCNGG	3 cut(s)	49, 291, 547
BmsI	GCATC	1 cut(s)	60
BpiI	GAAGAC	2 cut(s)	16, 69
BpmI	CTGGAG	1 cut(s)	130
Bpu10I	CCTNAGC	1 cut(s)	137
BsaBI	GATNNNNATC	1 cut(s)	423
BsaI	GGTCTC	2 cut(s)	178, 273
BsaJI	CCNNGG	5 cut(s)	47, 289, 290, 546, 631
BsaWI	WCCGGW	1 cut(s)	165
Bsc4I	CCNNNNNNNGG	1 cut(s)	465
Bse1I	ACTGG	4 cut(s)	113, 326, 459, 681
Bse8I	GATNNNNATC	1 cut(s)	423
BseBI	CCWGG	3 cut(s)	49, 291, 547
BseDI	CCNNGG	5 cut(s)	47, 289, 290, 546, 631
BseJI	GATNNNNATC	1 cut(s)	423
BseLI	CCNNNNNNNGG	1 cut(s)	465
BseMII	CTCAG	3 cut(s)	173, 357, 498
BseNI	ACTGG	4 cut(s)	113, 326, 459, 681
BseXI	GCAGC	4 cut(s)	358, 609, 651, 812
BseYI	CCCAGC	1 cut(s)	756
Bsh1236I	CGCG	1 cut(s)	730
BshNI	GGYRCC	1 cut(s)	448
BsiSI	CCGG	2 cut(s)	166, 356
BslFI	GGGAC	1 cut(s)	57
BslI	CCNNNNNNNGG	1 cut(s)	465
BsmAI	GTCTC	4 cut(s)	178, 273, 382, 483
BsmFI	GGGAC	1 cut(s)	57
BsmI	GAATGC	1 cut(s)	117
Bso31I	GGTCTC	2 cut(s)	178, 273
Bsp143I	GATC	5 cut(s)	79, 100, 418, 603, 763
Bsp19I	CCATGG	1 cut(s)	631
BspACI	CCGC	4 cut(s)	77, 374, 644, 730
BspCNI	CTCAG	3 cut(s)	174, 358, 499
BspFNI	CGCG	1 cut(s)	730
BspLI	GGNNCC	5 cut(s)	45, 46, 164, 242, 450
BspMAI	CTGCAG	1 cut(s)	802
BspPI	GGATC	1 cut(s)	87
BspT107I	GGYRCC	1 cut(s)	448
BspTNI	GGTCTC	2 cut(s)	178, 273
BsrI	ACTGG	4 cut(s)	113, 326, 459, 681
BssECI	CCNNGG	5 cut(s)	47, 289, 290, 546, 631
BssMI	GATC	5 cut(s)	79, 100, 418, 603, 763
BssT1I	CCWWGG	1 cut(s)	631
Bst2UI	CCWGG	3 cut(s)	49, 291, 547
Bst4CI	ACNGT	2 cut(s)	477, 795
Bst6I	CTCTTC	2 cut(s)	146, 216
BstC8I	GCNNGC	2 cut(s)	75, 161
BstDEI	CTNAG	6 cut(s)	24, 137, 182, 253, 366, 507
BstDSI	CCRYGG	1 cut(s)	631
BstFNI	CGCG	1 cut(s)	730
BstKTI	GATC	5 cut(s)	82, 103, 421, 606, 766
BstMAI	GTCTC	4 cut(s)	178, 273, 382, 483
BstMBI	GATC	5 cut(s)	79, 100, 418, 603, 763
BstNI	CCWGG	3 cut(s)	49, 291, 547
BstSCI	CCNGG	3 cut(s)	47, 289, 545
BstSFI	CTRYAG	1 cut(s)	798
BstUI	CGCG	1 cut(s)	730
BstV1I	GCAGC	4 cut(s)	358, 609, 651, 812
BstV2I	GAAGAC	2 cut(s)	16, 69
BtgI	CCRYGG	1 cut(s)	631
BtsIMutI	CAGTG	1 cut(s)	466
Cac8I	GCNNGC	2 cut(s)	75, 161
Cfr13I	GGNCC	2 cut(s)	44, 226
Csp6I	GTAC	1 cut(s)	449
CviAII	CATG	3 cut(s)	95, 601, 632
CviQI	GTAC	1 cut(s)	449
DdeI	CTNAG	6 cut(s)	24, 137, 182, 253, 366, 507
DpnI	GATC	5 cut(s)	81, 102, 420, 605, 765
DpnII	GATC	5 cut(s)	79, 100, 418, 603, 763
DriI	GACNNNNNGTC	1 cut(s)	395
Eam1104I	CTCTTC	2 cut(s)	146, 216
Eam1105I	GACNNNNNGTC	1 cut(s)	395
EarI	CTCTTC	2 cut(s)	146, 216
EciI	GGCGGA	1 cut(s)	659
Eco130I	CCWWGG	1 cut(s)	631
Eco31I	GGTCTC	2 cut(s)	178, 273
Eco32I	GATATC	1 cut(s)	788
Eco47I	GGWCC	2 cut(s)	44, 226
Eco57I	CTGAAG	2 cut(s)	78, 711
EcoO109I	RGGNCCY	2 cut(s)	44, 226
EcoRII	CCWGG	3 cut(s)	47, 289, 545
EcoRV	GATATC	1 cut(s)	788
EcoT14I	CCWWGG	1 cut(s)	631
ErhI	CCWWGG	1 cut(s)	631
FaeI	CATG	3 cut(s)	98, 604, 635
FaqI	GGGAC	1 cut(s)	57
FatI	CATG	3 cut(s)	94, 600, 631
FauI	CCCGC	1 cut(s)	723
FbaI	TGATCA	1 cut(s)	603
FblI	GTMKAC	2 cut(s)	399, 488
Fnu4HI	GCNGC	5 cut(s)	372, 375, 598, 665, 801
Fsp4HI	GCNGC	5 cut(s)	372, 375, 598, 665, 801
FspBI	CTAG	1 cut(s)	572
GluI	GCNGC	5 cut(s)	372, 375, 598, 665, 801
GsaI	CCCAGC	1 cut(s)	760
GsuI	CTGGAG	1 cut(s)	130
HapII	CCGG	2 cut(s)	166, 356
Hin1II	CATG	3 cut(s)	98, 604, 635
HincII	GTYRAC	2 cut(s)	400, 498
HindII	GTYRAC	2 cut(s)	400, 498
HinfI	GANTC	6 cut(s)	285, 390, 437, 455, 652, 773
HpaII	CCGG	2 cut(s)	166, 356
Hpy166II	GTNNAC	5 cut(s)	37, 400, 489, 498, 742
Hpy188I	TCNGA	7 cut(s)	183, 367, 523, 565, 657, 778, 785
Hpy188III	TCNNGA	3 cut(s)	313, 434, 572
Hpy8I	GTNNAC	5 cut(s)	37, 400, 489, 498, 742
Hpy99I	CGWCG	3 cut(s)	401, 404, 523
HpyAV	CCTTC	3 cut(s)	403, 458, 632
HpyCH4III	ACNGT	2 cut(s)	477, 795
HpyCH4IV	ACGT	1 cut(s)	494
HpyCH4V	TGCA	3 cut(s)	159, 800, 821
HpyF3I	CTNAG	6 cut(s)	24, 137, 182, 253, 366, 507
HpySE526I	ACGT	1 cut(s)	494
Hsp92II	CATG	3 cut(s)	98, 604, 635
KflI	GGGWCCC	1 cut(s)	44
KpnI	GGTACC	1 cut(s)	452
Ksp22I	TGATCA	1 cut(s)	603
Kzo9I	GATC	5 cut(s)	79, 100, 418, 603, 763
LmnI	GCTCC	2 cut(s)	168, 246
Lsp1109I	GCAGC	4 cut(s)	358, 609, 651, 812
LweI	GCATC	1 cut(s)	60
MaeI	CTAG	1 cut(s)	572
MaeII	ACGT	1 cut(s)	494
MaeIII	GTNAC	1 cut(s)	619
MalI	GATC	5 cut(s)	81, 102, 420, 605, 765
MboI	GATC	5 cut(s)	79, 100, 418, 603, 763
MluCI	AATT	1 cut(s)	175
MlyI	GAGTC	2 cut(s)	384, 431
MmeI	TCCRAC	1 cut(s)	501
MnlI	CCTC	7 cut(s)	22, 194, 217, 361, 397, 502, 694
MroXI	GAANNNNTTC	1 cut(s)	651
MspA1I	CMGCKG	2 cut(s)	56, 664
MspI	CCGG	2 cut(s)	166, 356
MspR9I	CCNGG	3 cut(s)	49, 291, 547
Mva1269I	GAATGC	1 cut(s)	117
MvaI	CCWGG	3 cut(s)	49, 291, 547
MvnI	CGCG	1 cut(s)	730
NcoI	CCATGG	1 cut(s)	631
NdeII	GATC	5 cut(s)	79, 100, 418, 603, 763
NlaIII	CATG	3 cut(s)	98, 604, 635
NlaIV	GGNNCC	5 cut(s)	45, 46, 164, 242, 450
PasI	CCCWGGG	1 cut(s)	290
PcsI	WCGNNNNNNNCGW	1 cut(s)	491
PctI	GAATGC	1 cut(s)	117
PdmI	GAANNNNTTC	1 cut(s)	651
PfeI	GAWTC	4 cut(s)	285, 455, 652, 773
PkrI	GCNGC	5 cut(s)	373, 376, 599, 666, 802
PleI	GAGTC	2 cut(s)	384, 431
PpsI	GAGTC	2 cut(s)	384, 431
PpuMI	RGGWCCY	2 cut(s)	44, 226
PsiI	TTATAA	1 cut(s)	672
Psp5II	RGGWCCY	2 cut(s)	44, 226
Psp6I	CCWGG	3 cut(s)	47, 289, 545
PspFI	CCCAGC	1 cut(s)	756
PspGI	CCWGG	3 cut(s)	47, 289, 545
PspN4I	GGNNCC	5 cut(s)	45, 46, 164, 242, 450
PspPI	GGNCC	2 cut(s)	44, 226
PspPPI	RGGWCCY	2 cut(s)	44, 226
PstI	CTGCAG	1 cut(s)	802
PvuII	CAGCTG	2 cut(s)	56, 664
RsaI	GTAC	1 cut(s)	450
RsaNI	GTAC	1 cut(s)	449
SalI	GTCGAC	1 cut(s)	398
SatI	GCNGC	5 cut(s)	372, 375, 598, 665, 801
Sau3AI	GATC	5 cut(s)	79, 100, 418, 603, 763
Sau96I	GGNCC	2 cut(s)	44, 226
SchI	GAGTC	2 cut(s)	384, 431
ScrFI	CCNGG	3 cut(s)	49, 291, 547
SfaNI	GCATC	1 cut(s)	60
SfcI	CTRYAG	1 cut(s)	798
SgrDI	CGTCGACG	1 cut(s)	398
SinI	GGWCC	2 cut(s)	44, 226
Sse9I	AATT	1 cut(s)	175
SsiI	CCGC	4 cut(s)	77, 374, 644, 730
SspI	AATATT	1 cut(s)	836
SspMI	CTAG	1 cut(s)	572
StyD4I	CCNGG	3 cut(s)	47, 289, 545
StyI	CCWWGG	1 cut(s)	631
TaaI	ACNGT	2 cut(s)	477, 795
TaiI	ACGT	1 cut(s)	497
TaqI	TCGA	2 cut(s)	399, 825
TaqII	GACCGA	1 cut(s)	202
TasI	AATT	1 cut(s)	175
TauI	GCSGC	1 cut(s)	377
TfiI	GAWTC	4 cut(s)	285, 455, 652, 773
TscAI	CASTG	1 cut(s)	466
TseI	GCWGC	4 cut(s)	371, 597, 664, 800
TspDTI	ATGAA	2 cut(s)	321, 728
TspGWI	ACGGA	2 cut(s)	385, 824
TspRI	CASTG	1 cut(s)	466
VpaK11BI	GGWCC	2 cut(s)	44, 226
XbaI	TCTAGA	1 cut(s)	571
XmiI	GTMKAC	2 cut(s)	399, 488
XmnI	GAANNNNTTC	1 cut(s)	651
XspI	CTAG	1 cut(s)	572

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.