Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0016271

Physical Location & Seq

Genomic Coordinates Reverse (-)

35640810 .. 35642163

Gene Structure 1354 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G405300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGGGTCGAAGACCGTGTTGTTCAAAGGAGGGAGTCAAGAAAGGGCCGTGGACTGCTCAAGAAGACAAGTTGCTTGCGGATTATATCAGAGATCACGGTGAAGGCAAATGGAGTAGCCTTCAGAAACAAGCAGGGCTTAAGAGATGCGGGAAGAGCTGTAGGCTTCGGTGGTTGAATTATCTGAGGCCGAATATCAAGCGAGGCAACATTACACAAGATGAAGAAGACCTAATCATCAGGCTCCACAAACTCTTAGGCAACAGATGGTCTCTAATAGCGGGGAGAATTCCAGGGCGAACAGACAATGAAATCAAGAACTACTGGAACACCAACTTGTGTAAGAAACCACTACCAAACAATTTTGTACCATGTAGACCCTCCGAGGAGGCCTCTTCAGACCCACAACAAGAACAACAGTCCAAAGCTGAAGACAAATTAAGCAACGTCCCCAAATACAATAATCAGAATGCAGAATCAGAAAGCAGTGAAGGGTCACTATCGTCATCGGCGACAAGGGAAGAAGAAGACTATTCTTCTCATGACTTGTGGATGAATTTTTACACGAGGGAAATGAGCCTTTCACAGTTTCTGGACACTGACTTTTCAAATATGAGCAATTTGTTTGCCGGGGTCATAGTCGGAGGATATTCTAGTACAAAACCCATGCATGACGATGACGTGGAGGCAGATTTTGGAGCTCAGCTGGCTGCTTTCACGGACTTAGCTGAAGAATGGATCATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006355 GO:0006357 GO:0006725 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009058 GO:0009611 GO:0009628 GO:0009651 GO:0009698 GO:0009699 GO:0009719 GO:0009725 GO:0009737 GO:0009751 GO:0009800 GO:0009803 GO:0009889 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0014070 GO:0016053 GO:0019219 GO:0019222 GO:0019438 GO:0019748 GO:0019752 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0032787 GO:0033993 GO:0042221 GO:0042493 GO:0042537 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0044550 GO:0046394 GO:0046677 GO:0048519 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0072330 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

248

Amino Acids

28.14

Weight (kDa)

5.53

Isoelectric Point (pI)

57.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016271)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g31090
malus_domestica	MD08G1070800.v1.1
prunus_persica	Prupe.1G405300_v2.0.a1
pyrus_communis	pycom08g05860
rosa_chinensis	RchiOBHm_Chr6g0311701
rosa_laevigata	RLG00000010381
rosa_multiflora	Rmu_sc0002888.1_g000020
rosa_roxburghii	Rroxscaffold_7G00157380
rosa_rugosa	Rorug06G0390900 Rorug06G0390900
rosa_samantha	Rh6AG506200 Rh6BG516900 Rh6CG522800 Rh6DG508600
rosa_wichuraiana	Rw6G044040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	373
AciI	CCGC	3 cut(s)	77, 147, 278
AclWI	GGATC	1 cut(s)	743
AcsI	RAATTY	2 cut(s)	285, 553
AcuI	CTGAAG	3 cut(s)	104, 378, 447
AfaI	GTAC	2 cut(s)	366, 655
AflII	CTTAAG	1 cut(s)	137
AgsI	TTSAA	3 cut(s)	24, 175, 606
AjiI	CACGTC	1 cut(s)	679
AjnI	CCWGG	1 cut(s)	289
AluBI	AGCT	5 cut(s)	156, 425, 698, 703, 725
AluI	AGCT	5 cut(s)	156, 425, 698, 703, 725
Alw21I	GWGCWC	1 cut(s)	700
Alw26I	GTCTC	1 cut(s)	273
AlwI	GGATC	1 cut(s)	743
AlwNI	CAGNNNCTG	1 cut(s)	589
AoxI	GGCC	3 cut(s)	44, 185, 387
ApeKI	GCWGC	1 cut(s)	707
ApoI	RAATTY	2 cut(s)	285, 553
AspS9I	GGNCC	1 cut(s)	44
AsuC2I	CCSGG	1 cut(s)	628
AsuHPI	GGTGA	1 cut(s)	110
BanII	GRGCYC	1 cut(s)	700
BauI	CACGAG	1 cut(s)	562
BbsI	GAAGAC	5 cut(s)	16, 69, 231, 435, 531
Bbv12I	GWGCWC	1 cut(s)	700
BbvI	GCAGC	1 cut(s)	694
BccI	CCATC	1 cut(s)	258
BceAI	ACGGC	1 cut(s)	31
BciT130I	CCWGG	1 cut(s)	291
BcnI	CCSGG	1 cut(s)	628
BcoDI	GTCTC	1 cut(s)	273
BfaI	CTAG	1 cut(s)	651
BfmI	CTRYAG	1 cut(s)	157
BfrI	CTTAAG	1 cut(s)	137
BisI	GCNGC	1 cut(s)	708
BlpI	GCTNAGC	1 cut(s)	699
BlsI	GCNGC	1 cut(s)	709
Bme1390I	CCNGG	2 cut(s)	291, 628
BmgBI	CACGTC	1 cut(s)	679
BmgT120I	GGNCC	1 cut(s)	44
BmiI	GGNNCC	1 cut(s)	242
BmrFI	CCNGG	2 cut(s)	291, 628
BmsI	GCATC	1 cut(s)	134
BpiI	GAAGAC	5 cut(s)	16, 69, 231, 435, 531
BplI	GAGNNNNNCTC	2 cut(s)	374, 406
Bpu1102I	GCTNAGC	1 cut(s)	699
BpuEI	CTTGAG	1 cut(s)	42
BpuMI	CCSGG	1 cut(s)	628
BsaI	GGTCTC	1 cut(s)	273
BsaJI	CCNNGG	4 cut(s)	47, 290, 381, 627
Bse1I	ACTGG	1 cut(s)	326
BseBI	CCWGG	1 cut(s)	291
BseDI	CCNNGG	4 cut(s)	47, 290, 381, 627
BseGI	GGATG	1 cut(s)	555
BseMII	CTCAG	2 cut(s)	173, 713
BseNI	ACTGG	1 cut(s)	326
BseRI	GAGGAG	1 cut(s)	398
BseXI	GCAGC	1 cut(s)	694
BshFI	GGCC	3 cut(s)	46, 187, 389
BsiHKAI	GWGCWC	1 cut(s)	700
BsiSI	CCGG	1 cut(s)	627
BslFI	GGGAC	1 cut(s)	431
BsmAI	GTCTC	1 cut(s)	273
BsmFI	GGGAC	1 cut(s)	431
BsmI	GAATGC	1 cut(s)	472
BsnI	GGCC	3 cut(s)	46, 187, 389
Bso31I	GGTCTC	1 cut(s)	273
Bsp1286I	GDGCHC	1 cut(s)	700
Bsp143I	GATC	2 cut(s)	91, 735
Bsp1720I	GCTNAGC	1 cut(s)	699
BspACI	CCGC	3 cut(s)	77, 147, 278
BspANI	GGCC	3 cut(s)	46, 187, 389
BspCNI	CTCAG	2 cut(s)	174, 712
BspHI	TCATGA	1 cut(s)	538
BspLI	GGNNCC	1 cut(s)	242
BspPI	GGATC	1 cut(s)	743
BspQI	GCTCTTC	1 cut(s)	146
BspTI	CTTAAG	1 cut(s)	137
BspTNI	GGTCTC	1 cut(s)	273
BsrI	ACTGG	1 cut(s)	326
BssECI	CCNNGG	4 cut(s)	47, 290, 381, 627
BssMI	GATC	2 cut(s)	91, 735
BssSI	CACGAG	1 cut(s)	562
Bst2BI	CACGAG	1 cut(s)	562
Bst2UI	CCWGG	1 cut(s)	291
Bst4CI	ACNGT	4 cut(s)	15, 98, 417, 585
Bst6I	CTCTTC	2 cut(s)	146, 397
BstAFI	CTTAAG	1 cut(s)	137
BstC8I	GCNNGC	2 cut(s)	75, 705
BstDEI	CTNAG	4 cut(s)	182, 253, 699, 721
BstDSI	CCRYGG	1 cut(s)	47
BstF5I	GGATG	1 cut(s)	555
BstKTI	GATC	2 cut(s)	94, 738
BstMAI	GTCTC	1 cut(s)	273
BstMBI	GATC	2 cut(s)	91, 735
BstMWI	GCNNNNNNNGC	2 cut(s)	153, 704
BstNI	CCWGG	1 cut(s)	291
BstSCI	CCNGG	2 cut(s)	289, 626
BstSFI	CTRYAG	1 cut(s)	157
BstV1I	GCAGC	1 cut(s)	694
BstV2I	GAAGAC	5 cut(s)	16, 69, 231, 435, 531
BsuRI	GGCC	3 cut(s)	46, 187, 389
BtgI	CCRYGG	1 cut(s)	47
BtrI	CACGTC	1 cut(s)	679
BtsCI	GGATG	1 cut(s)	555
BtsI	GCAGTG	1 cut(s)	490
BtsIMutI	CAGTG	2 cut(s)	490, 594
Cac8I	GCNNGC	2 cut(s)	75, 705
CaiI	CAGNNNCTG	1 cut(s)	589
CciI	TCATGA	1 cut(s)	538
Cfr13I	GGNCC	1 cut(s)	44
Csp6I	GTAC	2 cut(s)	365, 654
CviAII	CATG	5 cut(s)	369, 539, 664, 668, 739
CviQI	GTAC	2 cut(s)	365, 654
DdeI	CTNAG	4 cut(s)	182, 253, 699, 721
DpnI	GATC	2 cut(s)	93, 737
DpnII	GATC	2 cut(s)	91, 735
Eam1104I	CTCTTC	2 cut(s)	146, 397
EarI	CTCTTC	2 cut(s)	146, 397
Ecl136II	GAGCTC	1 cut(s)	698
Eco147I	AGGCCT	1 cut(s)	389
Eco24I	GRGCYC	1 cut(s)	700
Eco31I	GGTCTC	1 cut(s)	273
Eco53kI	GAGCTC	1 cut(s)	698
Eco57I	CTGAAG	3 cut(s)	104, 378, 447
EcoICRI	GAGCTC	1 cut(s)	698
EcoRI	GAATTC	1 cut(s)	285
EcoRII	CCWGG	1 cut(s)	289
EcoT22I	ATGCAT	1 cut(s)	669
EcoT38I	GRGCYC	1 cut(s)	700
FaeI	CATG	5 cut(s)	372, 542, 667, 671, 742
FaiI	YATR	8 cut(s)	84, 370, 540, 611, 635, 665, 669, 740
FalI	AAGNNNNNCTT	2 cut(s)	120, 152
FaqI	GGGAC	1 cut(s)	431
FatI	CATG	5 cut(s)	368, 538, 663, 667, 738
FauI	CCCGC	2 cut(s)	140, 271
FblI	GTMKAC	1 cut(s)	373
Fnu4HI	GCNGC	1 cut(s)	708
FokI	GGATG	1 cut(s)	562
FriOI	GRGCYC	1 cut(s)	700
Fsp4HI	GCNGC	1 cut(s)	708
FspBI	CTAG	1 cut(s)	651
GluI	GCNGC	1 cut(s)	708
HaeIII	GGCC	3 cut(s)	46, 187, 389
HapII	CCGG	1 cut(s)	627
Hin1II	CATG	5 cut(s)	372, 542, 667, 671, 742
HinfI	GANTC	2 cut(s)	33, 473
HpaII	CCGG	1 cut(s)	627
HphI	GGTGA	1 cut(s)	110
Hpy166II	GTNNAC	2 cut(s)	51, 374
Hpy188I	TCNGA	8 cut(s)	89, 123, 183, 382, 397, 465, 478, 641
Hpy188III	TCNNGA	5 cut(s)	37, 59, 313, 539, 590
Hpy8I	GTNNAC	2 cut(s)	51, 374
HpyAV	CCTTC	3 cut(s)	95, 128, 482
HpyCH4III	ACNGT	4 cut(s)	15, 98, 417, 585
HpyCH4IV	ACGT	2 cut(s)	444, 678
HpyCH4V	TGCA	2 cut(s)	470, 667
HpyF10VI	GCNNNNNNNGC	2 cut(s)	153, 704
HpyF3I	CTNAG	4 cut(s)	182, 253, 699, 721
HpySE526I	ACGT	2 cut(s)	444, 678
Hsp92II	CATG	5 cut(s)	372, 542, 667, 671, 742
Kzo9I	GATC	2 cut(s)	91, 735
LguI	GCTCTTC	1 cut(s)	146
LmnI	GCTCC	2 cut(s)	246, 695
LpnPI	CCDG	8 cut(s)	117, 223, 276, 303, 307, 575, 640, 689
Lsp1109I	GCAGC	1 cut(s)	694
LweI	GCATC	1 cut(s)	134
MaeI	CTAG	1 cut(s)	651
MaeII	ACGT	2 cut(s)	444, 678
MaeIII	GTNAC	1 cut(s)	492
MalI	GATC	2 cut(s)	93, 737
MboI	GATC	2 cut(s)	91, 735
MhlI	GDGCHC	1 cut(s)	700
MluCI	AATT	6 cut(s)	175, 285, 358, 434, 553, 616
MlyI	GAGTC	1 cut(s)	42
MmeI	TCCRAC	1 cut(s)	619
Mph1103I	ATGCAT	1 cut(s)	669
MseI	TTAA	2 cut(s)	138, 437
MslI	CAYNNNNRTG	1 cut(s)	672
MspA1I	CMGCKG	1 cut(s)	703
MspCI	CTTAAG	1 cut(s)	137
MspI	CCGG	1 cut(s)	627
MspR9I	CCNGG	2 cut(s)	291, 628
Mva1269I	GAATGC	1 cut(s)	472
MvaI	CCWGG	1 cut(s)	291
MwoI	GCNNNNNNNGC	2 cut(s)	153, 704
NciI	CCSGG	1 cut(s)	628
NdeII	GATC	2 cut(s)	91, 735
NlaIII	CATG	5 cut(s)	372, 542, 667, 671, 742
NlaIV	GGNNCC	1 cut(s)	242
NmuCI	GTSAC	1 cut(s)	492
NsiI	ATGCAT	1 cut(s)	669
PagI	TCATGA	1 cut(s)	538
PceI	AGGCCT	1 cut(s)	389
PciSI	GCTCTTC	1 cut(s)	146
PcsI	WCGNNNNNNNCGW	1 cut(s)	506
PctI	GAATGC	1 cut(s)	472
PfeI	GAWTC	1 cut(s)	473
PkrI	GCNGC	1 cut(s)	709
PleI	GAGTC	1 cut(s)	41
PpsI	GAGTC	1 cut(s)	41
Psp124BI	GAGCTC	1 cut(s)	700
Psp6I	CCWGG	1 cut(s)	289
PspGI	CCWGG	1 cut(s)	289
PspN4I	GGNNCC	1 cut(s)	242
PspPI	GGNCC	1 cut(s)	44
PstNI	CAGNNNCTG	1 cut(s)	589
PvuII	CAGCTG	1 cut(s)	703
RsaI	GTAC	2 cut(s)	366, 655
RsaNI	GTAC	2 cut(s)	365, 654
RseI	CAYNNNNRTG	1 cut(s)	672
SacI	GAGCTC	1 cut(s)	700
SapI	GCTCTTC	1 cut(s)	146
SaqAI	TTAA	2 cut(s)	138, 437
SatI	GCNGC	1 cut(s)	708
Sau3AI	GATC	2 cut(s)	91, 735
Sau96I	GGNCC	1 cut(s)	44
SchI	GAGTC	1 cut(s)	42
ScrFI	CCNGG	2 cut(s)	291, 628
SduI	GDGCHC	1 cut(s)	700
SetI	ASST	8 cut(s)	158, 231, 427, 447, 681, 700, 705, 727
SfaNI	GCATC	1 cut(s)	134
SfcI	CTRYAG	1 cut(s)	157
SmiMI	CAYNNNNRTG	1 cut(s)	672
SmlI	CTYRAG	2 cut(s)	57, 137
SmoI	CTYRAG	2 cut(s)	57, 137
Sse9I	AATT	6 cut(s)	175, 285, 358, 434, 553, 616
SseBI	AGGCCT	1 cut(s)	389
SsiI	CCGC	3 cut(s)	77, 147, 278
SspMI	CTAG	1 cut(s)	651
SstI	GAGCTC	1 cut(s)	700
StuI	AGGCCT	1 cut(s)	389
StyD4I	CCNGG	2 cut(s)	289, 626
TaaI	ACNGT	4 cut(s)	15, 98, 417, 585
TaiI	ACGT	2 cut(s)	447, 681
TaqI	TCGA	1 cut(s)	7
TasI	AATT	6 cut(s)	175, 285, 358, 434, 553, 616
TatI	WGTACW	1 cut(s)	653
TfiI	GAWTC	1 cut(s)	473
Tru1I	TTAA	2 cut(s)	138, 437
Tru9I	TTAA	2 cut(s)	138, 437
TscAI	CASTG	2 cut(s)	490, 601
TseFI	GTSAC	1 cut(s)	492
TseI	GCWGC	1 cut(s)	707
Tsp45I	GTSAC	1 cut(s)	492
TspDTI	ATGAA	3 cut(s)	234, 321, 566
TspGWI	ACGGA	1 cut(s)	731
TspRI	CASTG	2 cut(s)	490, 601
Vha464I	CTTAAG	1 cut(s)	137
XapI	RAATTY	2 cut(s)	285, 553
XmiI	GTMKAC	1 cut(s)	373
XspI	CTAG	1 cut(s)	651
Zsp2I	ATGCAT	1 cut(s)	669

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.