Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0017965

Physical Location & Seq

Genomic Coordinates Reverse (-)

18598230 .. 18599382

Gene Structure 1153 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G015930.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

ATGAGGGAGTTGATTCGAAAGCACTACAAGAGCTGGACATCGAAGGAGGAAGAAGCCCTAGCAGCCGGGGTGCATAAGTACGGGAGCGGCAACTGGAAAACCATCCTCAAATATTCCAAATTTGCTCGTTACCGCGCTCGGAAGTCATGCGGTGACCTGTGGAAGAAATGGAGGACAATGGCATTTAGGGTTTCCAATGAGAAACTGAAGACCATGTTTCCCAAGGTAAAGAAGGTTGTGGCTGCCCGCCTGGAGGCCATTAATGATGGGAAAAGCTCTGCTTTTGCTGAAAGAAAAGAGAGGGGTATAACGGAAGCGGTTGGACGCAAGATTAATGATGATCAGGGGGAGGAGACCGAAAGGGTTTCAAAGATGGAAGAAGACACGGAAGAGAGCACTATGTCAACAAAGGTAAGGAAGGTTGTGGATGATGAGGTTCAGAACTCTGCTAATCCTAATGAGGCAGTGAAGGAGACCGAAAGGGTTCCGGATCATGAGATGGTAGAAGAAGATGAGACCCTAATGATGGATGTTGAAAGTTCTGCTGATCCTGCTGAAGCAGCTAAGGAGAATGAAAGGATTTTGAAAATGAAAGAAGATGCCAAGTCTATGCTACTGTTAGCGAAAGAGATTTGGGGACATTGCTCGACGGAAGACACCAATCGAGTCTCTGCTCCTGCTTGTCCACAAGCAGTGAAGGAGAGCAAAAGGATTTCGGAGATTGCAGAAGACATTGATCGGTTTTCTGCTGCCCCTCCTCCACAGGCGGAGAAAAAGACCAAAATATTTTCAGAAATGGAAGAAGACACTGATCGAGGCCCTGCTCCTGCTCCTCCAAAAGCAGTTGAAGAGACCAAAAGGATTTCGGAGAAGGCAGAAGATACCAAATCCATGCTACTGTTCATGAATCAGATTTATGAAAGATTCACGCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000723 GO:0000781 GO:0000784 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003691 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006355 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0006996 GO:0008150 GO:0008152 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009751 GO:0009753 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010468 GO:0010556 GO:0014070 GO:0016043 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031627 GO:0031974 GO:0031981 GO:0032200 GO:0034641 GO:0042162 GO:0042221 GO:0042493 GO:0042592 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0046677 GO:0046686 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051276 GO:0060249 GO:0060255 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0098687 GO:0140110 GO:1901360 GO:1901363 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Linker_histone Myb_DNA-bind_6 Myb_DNA-binding

Protein Analysis

311

Amino Acids

35.52

Weight (kDa)

5.87

Isoelectric Point (pI)

42.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	11 - 58	2.1e-07	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017965)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g17810
rosa_laevigata	RLG00000017651
rosa_multiflora	Rmu_sc0007406.1_g000007 Rmu_sc0013358.1_g000003
rosa_roxburghii	Rroxscaffold_2G00135440
rosa_rugosa	Rorug02G0151700
rosa_samantha	Rh2AG200100 Rh2BG212800 Rh2CG204800 Rh2DG207700
rosa_wichuraiana	Rw2G015930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	87
AccII	CGCG	1 cut(s)	135
AccIII	TCCGGA	1 cut(s)	487
AciI	CCGC	6 cut(s)	87, 133, 150, 247, 317, 767
AclWI	GGATC	2 cut(s)	498, 542
AcsI	RAATTY	1 cut(s)	119
AcuI	CTGAAG	2 cut(s)	227, 576
AfaI	GTAC	1 cut(s)	80
AfiI	CCNNNNNNNGG	2 cut(s)	253, 526
AgsI	TTSAA	4 cut(s)	369, 536, 586, 848
AjnI	CCWGG	1 cut(s)	249
AluBI	AGCT	3 cut(s)	33, 276, 563
AluI	AGCT	3 cut(s)	33, 276, 563
Alw21I	GWGCWC	1 cut(s)	398
Alw26I	GTCTC	5 cut(s)	347, 467, 509, 673, 845
AlwI	GGATC	2 cut(s)	498, 542
Aor13HI	TCCGGA	1 cut(s)	487
AoxI	GGCC	2 cut(s)	255, 817
ApeKI	GCWGC	4 cut(s)	62, 242, 560, 749
ApoI	RAATTY	1 cut(s)	119
AseI	ATTAAT	2 cut(s)	261, 333
Asp700I	GAANNNNTTC	1 cut(s)	483
AspLEI	GCGC	1 cut(s)	137
AspS9I	GGNCC	1 cut(s)	818
AsuC2I	CCSGG	1 cut(s)	67
AsuHPI	GGTGA	1 cut(s)	164
AsuII	TTCGAA	1 cut(s)	16
BbsI	GAAGAC	5 cut(s)	215, 387, 660, 735, 810
Bbv12I	GWGCWC	1 cut(s)	398
BbvI	GCAGC	4 cut(s)	74, 229, 572, 736
BccI	CCATC	5 cut(s)	110, 260, 367, 493, 520
BciT130I	CCWGG	1 cut(s)	251
BclI	TGATCA	1 cut(s)	340
BcnI	CCSGG	1 cut(s)	67
BcoDI	GTCTC	5 cut(s)	347, 467, 509, 673, 845
BfaI	CTAG	1 cut(s)	59
BisI	GCNGC	5 cut(s)	63, 88, 243, 561, 750
BlsI	GCNGC	5 cut(s)	64, 89, 244, 562, 751
Bme1390I	CCNGG	2 cut(s)	67, 251
BmgT120I	GGNCC	1 cut(s)	818
BmiI	GGNNCC	1 cut(s)	486
BmrFI	CCNGG	2 cut(s)	67, 251
BmsI	GCATC	1 cut(s)	589
BpiI	GAAGAC	5 cut(s)	215, 387, 660, 735, 810
BpmI	CTGGAG	1 cut(s)	272
Bpu10I	CCTNAGC	1 cut(s)	564
Bpu14I	TTCGAA	1 cut(s)	16
BpuMI	CCSGG	1 cut(s)	67
BsaI	GGTCTC	4 cut(s)	347, 467, 509, 845
BsaJI	CCNNGG	2 cut(s)	66, 222
BsaWI	WCCGGW	1 cut(s)	487
Bsc4I	CCNNNNNNNGG	2 cut(s)	253, 526
Bse1I	ACTGG	1 cut(s)	98
Bse3DI	GCAATG	1 cut(s)	640
BseAI	TCCGGA	1 cut(s)	487
BseBI	CCWGG	1 cut(s)	251
BseDI	CCNNGG	2 cut(s)	66, 222
BseGI	GGATG	3 cut(s)	102, 433, 535
BseLI	CCNNNNNNNGG	2 cut(s)	253, 526
BseMI	GCAATG	1 cut(s)	640
BseNI	ACTGG	1 cut(s)	98
BseRI	GAGGAG	3 cut(s)	365, 747, 822
BseXI	GCAGC	4 cut(s)	74, 229, 572, 736
Bsh1236I	CGCG	1 cut(s)	135
BshFI	GGCC	2 cut(s)	257, 819
BsiHKAI	GWGCWC	1 cut(s)	398
BsiSI	CCGG	2 cut(s)	66, 488
BslFI	GGGAC	1 cut(s)	651
BslI	CCNNNNNNNGG	2 cut(s)	253, 526
BsmAI	GTCTC	5 cut(s)	347, 467, 509, 673, 845
BsmFI	GGGAC	1 cut(s)	651
BsnI	GGCC	2 cut(s)	257, 819
Bso31I	GGTCTC	4 cut(s)	347, 467, 509, 845
Bsp119I	TTCGAA	1 cut(s)	16
Bsp1286I	GDGCHC	1 cut(s)	398
Bsp13I	TCCGGA	1 cut(s)	487
Bsp143I	GATC	5 cut(s)	340, 490, 547, 736, 811
BspACI	CCGC	6 cut(s)	87, 133, 150, 247, 317, 767
BspANI	GGCC	2 cut(s)	257, 819
BspEI	TCCGGA	1 cut(s)	487
BspFNI	CGCG	1 cut(s)	135
BspHI	TCATGA	2 cut(s)	493, 903
BspLI	GGNNCC	1 cut(s)	486
BspPI	GGATC	2 cut(s)	498, 542
BspT104I	TTCGAA	1 cut(s)	16
BspTNI	GGTCTC	4 cut(s)	347, 467, 509, 845
BsrBI	CCGCTC	1 cut(s)	87
BsrDI	GCAATG	1 cut(s)	640
BsrI	ACTGG	1 cut(s)	98
BssECI	CCNNGG	2 cut(s)	66, 222
BssMI	GATC	5 cut(s)	340, 490, 547, 736, 811
BssT1I	CCWWGG	1 cut(s)	222
Bst2UI	CCWGG	1 cut(s)	251
Bst4CI	ACNGT	2 cut(s)	618, 900
Bst6I	CTCTTC	2 cut(s)	384, 843
BstBI	TTCGAA	1 cut(s)	16
BstC8I	GCNNGC	1 cut(s)	247
BstDEI	CTNAG	1 cut(s)	564
BstEII	GGTNACC	1 cut(s)	152
BstF5I	GGATG	3 cut(s)	102, 433, 535
BstFNI	CGCG	1 cut(s)	135
BstHHI	GCGC	1 cut(s)	137
BstKTI	GATC	5 cut(s)	343, 493, 550, 739, 814
BstMAI	GTCTC	5 cut(s)	347, 467, 509, 673, 845
BstMBI	GATC	5 cut(s)	340, 490, 547, 736, 811
BstMWI	GCNNNNNNNGC	3 cut(s)	62, 551, 560
BstNI	CCWGG	1 cut(s)	251
BstPI	GGTNACC	1 cut(s)	152
BstSCI	CCNGG	2 cut(s)	65, 249
BstUI	CGCG	1 cut(s)	135
BstV1I	GCAGC	4 cut(s)	74, 229, 572, 736
BstV2I	GAAGAC	5 cut(s)	215, 387, 660, 735, 810
BsuRI	GGCC	2 cut(s)	257, 819
BtsCI	GGATG	3 cut(s)	102, 433, 535
BtsI	GCAGTG	2 cut(s)	471, 699
BtsIMutI	CAGTG	3 cut(s)	471, 699, 807
Cac8I	GCNNGC	1 cut(s)	247
CciI	TCATGA	2 cut(s)	493, 903
CfoI	GCGC	1 cut(s)	137
Cfr13I	GGNCC	1 cut(s)	818
CseI	GACGC	1 cut(s)	333
Csp6I	GTAC	1 cut(s)	79
CviAII	CATG	5 cut(s)	147, 214, 494, 892, 904
CviJI	RGCY	8 cut(s)	33, 56, 65, 242, 257, 276, 563, 819
CviKI_1	RGCY	8 cut(s)	33, 56, 65, 242, 257, 276, 563, 819
CviQI	GTAC	1 cut(s)	79
DdeI	CTNAG	1 cut(s)	564
DpnI	GATC	5 cut(s)	342, 492, 549, 738, 813
DpnII	GATC	5 cut(s)	340, 490, 547, 736, 811
Eam1104I	CTCTTC	2 cut(s)	384, 843
EarI	CTCTTC	2 cut(s)	384, 843
EciI	GGCGGA	1 cut(s)	782
Eco130I	CCWWGG	1 cut(s)	222
Eco31I	GGTCTC	4 cut(s)	347, 467, 509, 845
Eco57I	CTGAAG	2 cut(s)	227, 576
Eco91I	GGTNACC	1 cut(s)	152
EcoO109I	RGGNCCY	1 cut(s)	818
EcoO65I	GGTNACC	1 cut(s)	152
EcoRII	CCWGG	1 cut(s)	249
EcoT14I	CCWWGG	1 cut(s)	222
ErhI	CCWWGG	1 cut(s)	222
FaeI	CATG	5 cut(s)	150, 217, 497, 895, 907
FalI	AAGNNNNNCTT	2 cut(s)	265, 297
FaqI	GGGAC	1 cut(s)	651
FatI	CATG	5 cut(s)	146, 213, 493, 891, 903
FauI	CCCGC	1 cut(s)	254
FbaI	TGATCA	1 cut(s)	340
Fnu4HI	GCNGC	5 cut(s)	63, 88, 243, 561, 750
FokI	GGATG	3 cut(s)	89, 440, 542
Fsp4HI	GCNGC	5 cut(s)	63, 88, 243, 561, 750
FspBI	CTAG	1 cut(s)	59
GlaI	GCGC	1 cut(s)	136
GluI	GCNGC	5 cut(s)	63, 88, 243, 561, 750
GsuI	CTGGAG	1 cut(s)	272
HaeIII	GGCC	2 cut(s)	257, 819
HapII	CCGG	2 cut(s)	66, 488
HgaI	GACGC	1 cut(s)	333
HhaI	GCGC	1 cut(s)	137
Hin1II	CATG	5 cut(s)	150, 217, 497, 895, 907
Hin6I	GCGC	1 cut(s)	135
HinP1I	GCGC	1 cut(s)	135
HincII	GTYRAC	1 cut(s)	405
HindII	GTYRAC	1 cut(s)	405
HinfI	GANTC	4 cut(s)	13, 666, 907, 924
HpaII	CCGG	2 cut(s)	66, 488
HphI	GGTGA	1 cut(s)	164
Hpy166II	GTNNAC	2 cut(s)	405, 686
Hpy188I	TCNGA	6 cut(s)	141, 441, 718, 793, 868, 912
Hpy188III	TCNNGA	3 cut(s)	488, 494, 904
Hpy8I	GTNNAC	2 cut(s)	405, 686
Hpy99I	CGWCG	1 cut(s)	652
HpyAV	CCTTC	6 cut(s)	37, 226, 412, 463, 691, 865
HpyCH4III	ACNGT	2 cut(s)	618, 900
HpyCH4V	TGCA	2 cut(s)	73, 725
HpyF10VI	GCNNNNNNNGC	3 cut(s)	62, 551, 560
HpyF3I	CTNAG	1 cut(s)	564
Hsp92II	CATG	5 cut(s)	150, 217, 497, 895, 907
HspAI	GCGC	1 cut(s)	135
Kpn2I	TCCGGA	1 cut(s)	487
Ksp22I	TGATCA	1 cut(s)	340
Kzo9I	GATC	5 cut(s)	340, 490, 547, 736, 811
LmnI	GCTCC	4 cut(s)	84, 679, 829, 835
Lsp1109I	GCAGC	4 cut(s)	74, 229, 572, 736
LweI	GCATC	1 cut(s)	589
MaeI	CTAG	1 cut(s)	59
MaeIII	GTNAC	2 cut(s)	128, 152
MalI	GATC	5 cut(s)	342, 492, 549, 738, 813
MbiI	CCGCTC	1 cut(s)	87
MboI	GATC	5 cut(s)	340, 490, 547, 736, 811
MhlI	GDGCHC	1 cut(s)	398
MluCI	AATT	1 cut(s)	119
MlyI	GAGTC	1 cut(s)	675
MmeI	TCCRAC	1 cut(s)	301
MroI	TCCGGA	1 cut(s)	487
MroXI	GAANNNNTTC	1 cut(s)	483
MseI	TTAA	2 cut(s)	261, 333
MspI	CCGG	2 cut(s)	66, 488
MspR9I	CCNGG	2 cut(s)	67, 251
MvaI	CCWGG	1 cut(s)	251
MvnI	CGCG	1 cut(s)	135
MwoI	GCNNNNNNNGC	3 cut(s)	62, 551, 560
NciI	CCSGG	1 cut(s)	67
NdeII	GATC	5 cut(s)	340, 490, 547, 736, 811
NlaIII	CATG	5 cut(s)	150, 217, 497, 895, 907
NlaIV	GGNNCC	1 cut(s)	486
NmuCI	GTSAC	1 cut(s)	152
NspV	TTCGAA	1 cut(s)	16
PagI	TCATGA	2 cut(s)	493, 903
PdmI	GAANNNNTTC	1 cut(s)	483
PfeI	GAWTC	3 cut(s)	13, 907, 924
PkrI	GCNGC	5 cut(s)	64, 89, 244, 562, 751
PleI	GAGTC	1 cut(s)	674
PpsI	GAGTC	1 cut(s)	674
PshBI	ATTAAT	2 cut(s)	261, 333
Psp6I	CCWGG	1 cut(s)	249
PspEI	GGTNACC	1 cut(s)	152
PspGI	CCWGG	1 cut(s)	249
PspN4I	GGNNCC	1 cut(s)	486
PspPI	GGNCC	1 cut(s)	818
RsaI	GTAC	1 cut(s)	80
RsaNI	GTAC	1 cut(s)	79
SaqAI	TTAA	2 cut(s)	261, 333
SatI	GCNGC	5 cut(s)	63, 88, 243, 561, 750
Sau3AI	GATC	5 cut(s)	340, 490, 547, 736, 811
Sau96I	GGNCC	1 cut(s)	818
SchI	GAGTC	1 cut(s)	675
ScrFI	CCNGG	2 cut(s)	67, 251
SduI	GDGCHC	1 cut(s)	398
SetI	ASST	9 cut(s)	35, 159, 228, 237, 278, 414, 423, 438, 565
SfaNI	GCATC	1 cut(s)	589
SfuI	TTCGAA	1 cut(s)	16
Sse9I	AATT	1 cut(s)	119
SsiI	CCGC	6 cut(s)	87, 133, 150, 247, 317, 767
SspI	AATATT	2 cut(s)	113, 786
SspMI	CTAG	1 cut(s)	59
StyD4I	CCNGG	2 cut(s)	65, 249
StyI	CCWWGG	1 cut(s)	222
TaaI	ACNGT	2 cut(s)	618, 900
TaqI	TCGA	5 cut(s)	16, 41, 647, 664, 814
TaqII	GACCGA	2 cut(s)	371, 491
TasI	AATT	1 cut(s)	119
TauI	GCSGC	1 cut(s)	90
TfiI	GAWTC	3 cut(s)	13, 907, 924
Tru1I	TTAA	2 cut(s)	261, 333
Tru9I	TTAA	2 cut(s)	261, 333
TscAI	CASTG	3 cut(s)	471, 699, 814
TseFI	GTSAC	1 cut(s)	152
TseI	GCWGC	4 cut(s)	62, 242, 560, 749
Tsp45I	GTSAC	1 cut(s)	152
TspDTI	ATGAA	5 cut(s)	588, 605, 892, 920, 933
TspGWI	ACGGA	3 cut(s)	326, 401, 665
TspRI	CASTG	3 cut(s)	471, 699, 814
VspI	ATTAAT	2 cut(s)	261, 333
XapI	RAATTY	1 cut(s)	119
XmnI	GAANNNNTTC	1 cut(s)	483
XspI	CTAG	1 cut(s)	59

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.