Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0017965

Physical Location & Seq

Genomic Coordinates Reverse (-)

10348810 .. 10349694

Gene Structure 885 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g17810.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

ATGCGGGAGTTGATTCGAAAGCAACACAAGAGCTGGACGTCGAAGGAGGAAGAAGCCCTAGCAGCCGGAGTTCAAAAGCACAGCGCCGGCAACTGGAAAACCATCCTCAAATATTCCAAGTTTGCCAGTTATCTTGCTCAGAAGTCATCTAGTGACCTGTGGAAGAAATGGGAGACAATGACATTTAGGGTTTCCGATGAGAAGCTGAAGCCTTTGTCTCCCAAGGTAAAGAAGATTGTGGCGGCCAACCTCGAGCTGGAGGGCATCAATGATCGCCAAAGCTCAGCTTTTGATGATCATGATCAGGAGGAGAAGGTTGAAAGGATTTTGGAGATGGAAGAAGACAGCACCATGTCAACTAAGGTAAAGAATGATGTGGATGATGTTCAGAATTCTGCTAATGCTGAAGAAGAAGAGGTGAAGGAGACGGAAAGGGTTTCGATTATGGCAGAAAAAGAAGAGACATCAATGATGGATGCTCAAAGTTCTGCTGATCCATCTGAAGCAGTTAGGGAGACCGAAAGGATTATGAAGATGAAAGAATTCGAAGATGTCAAGTCTATGCTATCGTTAGCGAACTTGTTTATGGAAAGATTCTCGCCACAAAACACCAATCAAGTCTCTGATAGTGTTGCTACTGCTTTTTCACAAGCAGTGAAGGAGAGCAAAAGGGCTTCGGAGATGGCAGAAGGCATTGATCGTTTTTCTACTACTTCTCCCCCACAAGCAGAGAAAGAGACTGAGGTGACTTCAAGAATGAAAGAAGACACCAATCAAGTCCCTGCTCCTGCTCCTGCTCCTCCACAAGCAGTTTCCGAGACGGTAGAAGATACCAGATCTATGCTACTGCTCTTGAGTGAGATCTGTGAAAGATTCATGTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000723 GO:0000781 GO:0000784 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003691 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006355 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0006996 GO:0008150 GO:0008152 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009751 GO:0009753 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010468 GO:0010556 GO:0014070 GO:0016043 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031627 GO:0031974 GO:0031981 GO:0032200 GO:0034641 GO:0042162 GO:0042221 GO:0042493 GO:0042592 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0046677 GO:0046686 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051276 GO:0060249 GO:0060255 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0098687 GO:0140110 GO:1901360 GO:1901363 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Linker_histone Myb_DNA-bind_6 Myb_DNA-binding

Protein Analysis

295

Amino Acids

33.34

Weight (kDa)

4.87

Isoelectric Point (pI)

50.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-bind_6	PF13921	12 - 61	4.5e-06	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017965)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g17810
rosa_laevigata	RLG00000017651
rosa_multiflora	Rmu_sc0007406.1_g000007 Rmu_sc0013358.1_g000003
rosa_roxburghii	Rroxscaffold_2G00135440
rosa_rugosa	Rorug02G0151700
rosa_samantha	Rh2AG200100 Rh2BG212800 Rh2CG204800 Rh2DG207700
rosa_wichuraiana	Rw2G015930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	41
AciI	CCGC	2 cut(s)	4, 242
AclWI	GGATC	1 cut(s)	488
AcoI	YGGCCR	1 cut(s)	243
AcsI	RAATTY	2 cut(s)	391, 542
AcuI	CTGAAG	3 cut(s)	227, 426, 522
AcyI	GRCGYC	1 cut(s)	38
AfiI	CCNNNNNNNGG	2 cut(s)	93, 256
AgsI	TTSAA	3 cut(s)	74, 320, 753
AluBI	AGCT	5 cut(s)	33, 205, 256, 282, 287
AluI	AGCT	5 cut(s)	33, 205, 256, 282, 287
Alw26I	GTCTC	8 cut(s)	167, 222, 419, 455, 509, 625, 731, 812
AlwI	GGATC	1 cut(s)	488
Ama87I	CYCGRG	1 cut(s)	251
AoxI	GGCC	1 cut(s)	243
ApeKI	GCWGC	1 cut(s)	62
ApoI	RAATTY	2 cut(s)	391, 542
Asp700I	GAANNNNTTC	1 cut(s)	542
AspLEI	GCGC	1 cut(s)	86
AsuHPI	GGTGA	2 cut(s)	430, 757
AsuII	TTCGAA	2 cut(s)	16, 546
AvaI	CYCGRG	1 cut(s)	251
BbsI	GAAGAC	2 cut(s)	348, 771
BbvI	GCAGC	1 cut(s)	74
BccI	CCATC	5 cut(s)	110, 328, 466, 505, 676
BclI	TGATCA	2 cut(s)	295, 301
BcoDI	GTCTC	8 cut(s)	167, 222, 419, 455, 509, 625, 731, 812
BfaI	CTAG	2 cut(s)	59, 150
BfoI	RGCGCY	1 cut(s)	87
BglII	AGATCT	2 cut(s)	836, 861
BisI	GCNGC	2 cut(s)	63, 243
BlpI	GCTNAGC	1 cut(s)	283
BlsI	GCNGC	2 cut(s)	64, 244
BmeT110I	CYCGRG	1 cut(s)	251
BmsI	GCATC	2 cut(s)	273, 466
BpiI	GAAGAC	2 cut(s)	348, 771
BpmI	CTGGAG	1 cut(s)	278
Bpu1102I	GCTNAGC	1 cut(s)	283
Bpu14I	TTCGAA	2 cut(s)	16, 546
BpuEI	CTTGAG	1 cut(s)	874
BsaBI	GATNNNNATC	1 cut(s)	300
BsaHI	GRCGYC	1 cut(s)	38
BsaI	GGTCTC	1 cut(s)	509
BsaJI	CCNNGG	1 cut(s)	222
BsaXI	ACNNNNNCTCC	2 cut(s)	700, 730
Bsc4I	CCNNNNNNNGG	2 cut(s)	93, 256
Bse118I	RCCGGY	1 cut(s)	86
Bse1I	ACTGG	2 cut(s)	98, 126
Bse8I	GATNNNNATC	1 cut(s)	300
BseDI	CCNNGG	1 cut(s)	222
BseGI	GGATG	3 cut(s)	102, 385, 481
BseJI	GATNNNNATC	1 cut(s)	300
BseLI	CCNNNNNNNGG	2 cut(s)	93, 256
BseMII	CTCAG	3 cut(s)	152, 297, 732
BseNI	ACTGG	2 cut(s)	98, 126
BseRI	GAGGAG	2 cut(s)	323, 789
BseXI	GCAGC	1 cut(s)	74
BshFI	GGCC	1 cut(s)	245
BsiHKCI	CYCGRG	1 cut(s)	251
BsiSI	CCGG	2 cut(s)	66, 87
BslFI	GGGAC	1 cut(s)	764
BslI	CCNNNNNNNGG	2 cut(s)	93, 256
BsmAI	GTCTC	8 cut(s)	167, 222, 419, 455, 509, 625, 731, 812
BsmBI	CGTCTC	2 cut(s)	419, 812
BsmFI	GGGAC	1 cut(s)	764
BsnI	GGCC	1 cut(s)	245
Bso31I	GGTCTC	1 cut(s)	509
BsoBI	CYCGRG	1 cut(s)	251
Bsp119I	TTCGAA	2 cut(s)	16, 546
Bsp143I	GATC	7 cut(s)	271, 295, 301, 493, 697, 836, 861
Bsp1720I	GCTNAGC	1 cut(s)	283
BspACI	CCGC	2 cut(s)	4, 242
BspANI	GGCC	1 cut(s)	245
BspCNI	CTCAG	3 cut(s)	151, 296, 733
BspHI	TCATGA	1 cut(s)	298
BspPI	GGATC	1 cut(s)	488
BspT104I	TTCGAA	2 cut(s)	16, 546
BspTNI	GGTCTC	1 cut(s)	509
BsrFI	RCCGGY	1 cut(s)	86
BsrI	ACTGG	2 cut(s)	98, 126
BssAI	RCCGGY	1 cut(s)	86
BssECI	CCNNGG	1 cut(s)	222
BssMI	GATC	7 cut(s)	271, 295, 301, 493, 697, 836, 861
BssNI	GRCGYC	1 cut(s)	38
BssT1I	CCWWGG	1 cut(s)	222
Bst4CI	ACNGT	1 cut(s)	823
Bst6I	CTCTTC	2 cut(s)	408, 453
BstACI	GRCGYC	1 cut(s)	38
BstBI	TTCGAA	2 cut(s)	16, 546
BstC8I	GCNNGC	1 cut(s)	88
BstDEI	CTNAG	4 cut(s)	138, 283, 360, 741
BstF5I	GGATG	3 cut(s)	102, 385, 481
BstH2I	RGCGCY	1 cut(s)	87
BstHHI	GCGC	1 cut(s)	86
BstKTI	GATC	7 cut(s)	274, 298, 304, 496, 700, 839, 864
BstMAI	GTCTC	8 cut(s)	167, 222, 419, 455, 509, 625, 731, 812
BstMBI	GATC	7 cut(s)	271, 295, 301, 493, 697, 836, 861
BstMWI	GCNNNNNNNGC	1 cut(s)	62
BstV1I	GCAGC	1 cut(s)	74
BstV2I	GAAGAC	2 cut(s)	348, 771
BstX2I	RGATCY	2 cut(s)	836, 861
BstYI	RGATCY	2 cut(s)	836, 861
BsuRI	GGCC	1 cut(s)	245
BtsCI	GGATG	3 cut(s)	102, 385, 481
BtsI	GCAGTG	1 cut(s)	660
BtsIMutI	CAGTG	1 cut(s)	660
Cac8I	GCNNGC	1 cut(s)	88
CciI	TCATGA	1 cut(s)	298
CfoI	GCGC	1 cut(s)	86
Cfr10I	RCCGGY	1 cut(s)	86
CviAII	CATG	3 cut(s)	299, 352, 877
DdeI	CTNAG	4 cut(s)	138, 283, 360, 741
DpnI	GATC	7 cut(s)	273, 297, 303, 495, 699, 838, 863
DpnII	GATC	7 cut(s)	271, 295, 301, 493, 697, 836, 861
EaeI	YGGCCR	1 cut(s)	243
Eam1104I	CTCTTC	2 cut(s)	408, 453
EarI	CTCTTC	2 cut(s)	408, 453
Eco130I	CCWWGG	1 cut(s)	222
Eco31I	GGTCTC	1 cut(s)	509
Eco57I	CTGAAG	3 cut(s)	227, 426, 522
Eco88I	CYCGRG	1 cut(s)	251
EcoRI	GAATTC	2 cut(s)	391, 542
EcoT14I	CCWWGG	1 cut(s)	222
ErhI	CCWWGG	1 cut(s)	222
Esp3I	CGTCTC	2 cut(s)	419, 812
FaeI	CATG	3 cut(s)	302, 355, 880
FaiI	YATR	8 cut(s)	300, 353, 446, 530, 563, 587, 842, 878
FalI	AAGNNNNNCTT	2 cut(s)	271, 303
FaqI	GGGAC	1 cut(s)	764
FatI	CATG	3 cut(s)	298, 351, 876
FbaI	TGATCA	2 cut(s)	295, 301
Fnu4HI	GCNGC	2 cut(s)	63, 243
FokI	GGATG	3 cut(s)	89, 392, 488
Fsp4HI	GCNGC	2 cut(s)	63, 243
FspBI	CTAG	2 cut(s)	59, 150
GlaI	GCGC	1 cut(s)	85
GluI	GCNGC	2 cut(s)	63, 243
GsuI	CTGGAG	1 cut(s)	278
HaeII	RGCGCY	1 cut(s)	87
HaeIII	GGCC	1 cut(s)	245
HapII	CCGG	2 cut(s)	66, 87
HhaI	GCGC	1 cut(s)	86
Hin1I	GRCGYC	1 cut(s)	38
Hin1II	CATG	3 cut(s)	302, 355, 880
Hin6I	GCGC	1 cut(s)	84
HinP1I	GCGC	1 cut(s)	84
HincII	GTYRAC	1 cut(s)	357
HindII	GTYRAC	1 cut(s)	357
HinfI	GANTC	3 cut(s)	13, 594, 873
HpaII	CCGG	2 cut(s)	66, 87
HphI	GGTGA	2 cut(s)	430, 757
Hpy166II	GTNNAC	1 cut(s)	357
Hpy188I	TCNGA	7 cut(s)	141, 196, 390, 502, 625, 679, 817
Hpy188III	TCNNGA	4 cut(s)	299, 305, 753, 853
Hpy8I	GTNNAC	1 cut(s)	357
Hpy99I	CGWCG	1 cut(s)	43
HpyAV	CCTTC	5 cut(s)	37, 307, 415, 652, 683
HpyCH4III	ACNGT	1 cut(s)	823
HpyCH4IV	ACGT	1 cut(s)	38
HpyF10VI	GCNNNNNNNGC	1 cut(s)	62
HpyF3I	CTNAG	4 cut(s)	138, 283, 360, 741
HpySE526I	ACGT	1 cut(s)	38
Hsp92I	GRCGYC	1 cut(s)	38
Hsp92II	CATG	3 cut(s)	302, 355, 880
HspAI	GCGC	1 cut(s)	84
KroI	GCCGGC	1 cut(s)	86
KroNI	GCCGGC	1 cut(s)	88
Ksp22I	TGATCA	2 cut(s)	295, 301
Kzo9I	GATC	7 cut(s)	271, 295, 301, 493, 697, 836, 861
LmnI	GCTCC	3 cut(s)	790, 796, 802
Lsp1109I	GCAGC	1 cut(s)	74
LweI	GCATC	2 cut(s)	273, 466
MaeI	CTAG	2 cut(s)	59, 150
MaeII	ACGT	1 cut(s)	38
MaeIII	GTNAC	2 cut(s)	152, 745
MalI	GATC	7 cut(s)	273, 297, 303, 495, 699, 838, 863
MboI	GATC	7 cut(s)	271, 295, 301, 493, 697, 836, 861
MflI	RGATCY	2 cut(s)	836, 861
MluCI	AATT	2 cut(s)	391, 542
MnlI	CCTC	8 cut(s)	40, 116, 253, 260, 301, 409, 736, 810
MroNI	GCCGGC	1 cut(s)	86
MroXI	GAANNNNTTC	1 cut(s)	542
MspI	CCGG	2 cut(s)	66, 87
MwoI	GCNNNNNNNGC	1 cut(s)	62
NaeI	GCCGGC	1 cut(s)	88
NdeII	GATC	7 cut(s)	271, 295, 301, 493, 697, 836, 861
NgoMIV	GCCGGC	1 cut(s)	86
NlaIII	CATG	3 cut(s)	302, 355, 880
NmuCI	GTSAC	2 cut(s)	152, 745
NspV	TTCGAA	2 cut(s)	16, 546
PaeR7I	CTCGAG	1 cut(s)	251
PagI	TCATGA	1 cut(s)	298
PdiI	GCCGGC	1 cut(s)	88
PdmI	GAANNNNTTC	1 cut(s)	542
PfeI	GAWTC	3 cut(s)	13, 594, 873
PkrI	GCNGC	2 cut(s)	64, 244
PspXI	VCTCGAGB	1 cut(s)	251
PsuI	RGATCY	2 cut(s)	836, 861
SatI	GCNGC	2 cut(s)	63, 243
Sau3AI	GATC	7 cut(s)	271, 295, 301, 493, 697, 836, 861
SfaNI	GCATC	2 cut(s)	273, 466
Sfr274I	CTCGAG	1 cut(s)	251
SfuI	TTCGAA	2 cut(s)	16, 546
SlaI	CTCGAG	1 cut(s)	251
SmlI	CTYRAG	2 cut(s)	251, 853
SmoI	CTYRAG	2 cut(s)	251, 853
Sse9I	AATT	2 cut(s)	391, 542
SsiI	CCGC	2 cut(s)	4, 242
SspI	AATATT	1 cut(s)	113
SspMI	CTAG	2 cut(s)	59, 150
StyI	CCWWGG	1 cut(s)	222
TaaI	ACNGT	1 cut(s)	823
TaiI	ACGT	1 cut(s)	41
TaqI	TCGA	5 cut(s)	16, 41, 252, 440, 546
TaqII	GACCGA	1 cut(s)	533
TasI	AATT	2 cut(s)	391, 542
TauI	GCSGC	1 cut(s)	245
TfiI	GAWTC	3 cut(s)	13, 594, 873
TscAI	CASTG	1 cut(s)	660
TseFI	GTSAC	2 cut(s)	152, 745
TseI	GCWGC	1 cut(s)	62
Tsp45I	GTSAC	2 cut(s)	152, 745
TspDTI	ATGAA	4 cut(s)	545, 551, 773, 865
TspGWI	ACGGA	1 cut(s)	443
TspRI	CASTG	1 cut(s)	660
XapI	RAATTY	2 cut(s)	391, 542
XcmI	CCANNNNNNNNNTGG	1 cut(s)	253
XhoI	CTCGAG	1 cut(s)	251
XmnI	GAANNNNTTC	1 cut(s)	542
XspI	CTAG	2 cut(s)	59, 150
ZraI	GACGTC	1 cut(s)	39

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.