Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0017965

Physical Location & Seq

Genomic Coordinates Reverse (-)

13423246 .. 13423542

Gene Structure 297 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0151700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

ATGACCGAGCTCGCTTGGGGTTTGGAGCTTAGTAAGCAGAGGTTCGTTTGGGTAGTACAGTTGCCCATTATAACTACTGCTGAAGCATATTTAACTGCAGGTAACGGTTACGACGATGACAATAACCCATTGAAGTTCATGCCTAAGGGGTTCTTGGATCGGACCAAGGGCATTGGTCTTGTCATCCCTGTTGGGCTCCTCAAGTGGACACCTTGGCGCATCGATCAGTCGGAGGGTTTTTGTCACATTGTGGATGGAACTCAACATTGGAGAGCATCACCAATGGAGTGCCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BTB NPH3

Protein Analysis

98

Amino Acids

11.18

Weight (kDa)

6.05

Isoelectric Point (pI)

29.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017965)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g17810
rosa_laevigata	RLG00000017651
rosa_multiflora	Rmu_sc0007406.1_g000007 Rmu_sc0013358.1_g000003
rosa_roxburghii	Rroxscaffold_2G00135440
rosa_rugosa	Rorug02G0151700
rosa_samantha	Rh2AG200100 Rh2BG212800 Rh2CG204800 Rh2DG207700
rosa_wichuraiana	Rw2G015930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	71
Acc36I	ACCTGC	1 cut(s)	89
AclWI	GGATC	1 cut(s)	165
AcuI	CTGAAG	1 cut(s)	102
AdeI	CACNNNGTG	1 cut(s)	250
AfaI	GTAC	1 cut(s)	57
AgsI	TTSAA	1 cut(s)	133
AjuI	GAANNNNNNNTTGG	2 cut(s)	250, 282
AluBI	AGCT	2 cut(s)	10, 28
AluI	AGCT	2 cut(s)	10, 28
Alw21I	GWGCWC	1 cut(s)	12
AlwI	GGATC	1 cut(s)	165
AspLEI	GCGC	1 cut(s)	219
AspS9I	GGNCC	1 cut(s)	162
AsuHPI	GGTGA	1 cut(s)	270
AvaII	GGWCC	1 cut(s)	162
AxyI	CCTNAGG	1 cut(s)	144
BanII	GRGCYC	2 cut(s)	12, 198
Bbv12I	GWGCWC	1 cut(s)	12
BccI	CCATC	1 cut(s)	248
BfmI	CTRYAG	1 cut(s)	96
BfuAI	ACCTGC	1 cut(s)	89
Bme18I	GGWCC	1 cut(s)	162
BmgT120I	GGNCC	1 cut(s)	162
BmiI	GGNNCC	1 cut(s)	197
BmsI	GCATC	2 cut(s)	228, 284
BpuEI	CTTGAG	1 cut(s)	185
Bsa29I	ATCGAT	1 cut(s)	222
BsaJI	CCNNGG	2 cut(s)	165, 212
Bse21I	CCTNAGG	1 cut(s)	144
BseCI	ATCGAT	1 cut(s)	222
BseDI	CCNNGG	2 cut(s)	165, 212
BseGI	GGATG	2 cut(s)	183, 259
BseRI	GAGGAG	1 cut(s)	188
BshVI	ATCGAT	1 cut(s)	222
BsiHKAI	GWGCWC	1 cut(s)	12
Bsp1286I	GDGCHC	2 cut(s)	12, 198
Bsp143I	GATC	2 cut(s)	157, 223
BspDI	ATCGAT	1 cut(s)	222
BspLI	GGNNCC	1 cut(s)	197
BspMAI	CTGCAG	1 cut(s)	100
BspMI	ACCTGC	1 cut(s)	89
BspPI	GGATC	1 cut(s)	165
BssECI	CCNNGG	2 cut(s)	165, 212
BssMI	GATC	2 cut(s)	157, 223
BssT1I	CCWWGG	2 cut(s)	165, 212
Bst4CI	ACNGT	2 cut(s)	60, 107
BstC8I	GCNNGC	1 cut(s)	12
BstDEI	CTNAG	2 cut(s)	29, 144
BstF5I	GGATG	2 cut(s)	183, 259
BstHHI	GCGC	1 cut(s)	219
BstKTI	GATC	2 cut(s)	160, 226
BstMBI	GATC	2 cut(s)	157, 223
BstMWI	GCNNNNNNNGC	1 cut(s)	34
BstSFI	CTRYAG	1 cut(s)	96
Bsu15I	ATCGAT	1 cut(s)	222
Bsu36I	CCTNAGG	1 cut(s)	144
BsuTUI	ATCGAT	1 cut(s)	222
BtsCI	GGATG	2 cut(s)	183, 259
BveI	ACCTGC	1 cut(s)	89
Cac8I	GCNNGC	1 cut(s)	12
CfoI	GCGC	1 cut(s)	219
Cfr13I	GGNCC	1 cut(s)	162
ClaI	ATCGAT	1 cut(s)	222
Csp6I	GTAC	1 cut(s)	56
CviAII	CATG	1 cut(s)	139
CviJI	RGCY	3 cut(s)	10, 28, 196
CviKI_1	RGCY	3 cut(s)	10, 28, 196
CviQI	GTAC	1 cut(s)	56
DdeI	CTNAG	2 cut(s)	29, 144
DpnI	GATC	2 cut(s)	159, 225
DpnII	GATC	2 cut(s)	157, 223
DraIII	CACNNNGTG	1 cut(s)	250
Ecl136II	GAGCTC	1 cut(s)	10
Eco130I	CCWWGG	2 cut(s)	165, 212
Eco24I	GRGCYC	2 cut(s)	12, 198
Eco47I	GGWCC	1 cut(s)	162
Eco53kI	GAGCTC	1 cut(s)	10
Eco57I	CTGAAG	1 cut(s)	102
Eco81I	CCTNAGG	1 cut(s)	144
EcoICRI	GAGCTC	1 cut(s)	10
EcoT14I	CCWWGG	2 cut(s)	165, 212
EcoT38I	GRGCYC	2 cut(s)	12, 198
ErhI	CCWWGG	2 cut(s)	165, 212
FaeI	CATG	1 cut(s)	142
FaiI	YATR	3 cut(s)	71, 88, 140
FalI	AAGNNNNNCTT	2 cut(s)	137, 169
FatI	CATG	1 cut(s)	138
FokI	GGATG	2 cut(s)	170, 266
FriOI	GRGCYC	2 cut(s)	12, 198
GlaI	GCGC	1 cut(s)	218
HhaI	GCGC	1 cut(s)	219
Hin1II	CATG	1 cut(s)	142
Hin6I	GCGC	1 cut(s)	217
HinP1I	GCGC	1 cut(s)	217
HphI	GGTGA	1 cut(s)	270
Hpy166II	GTNNAC	1 cut(s)	207
Hpy188I	TCNGA	2 cut(s)	162, 232
Hpy8I	GTNNAC	1 cut(s)	207
Hpy99I	CGWCG	1 cut(s)	116
HpyCH4III	ACNGT	2 cut(s)	60, 107
HpyCH4V	TGCA	1 cut(s)	98
HpyF10VI	GCNNNNNNNGC	1 cut(s)	34
HpyF3I	CTNAG	2 cut(s)	29, 144
Hsp92II	CATG	1 cut(s)	142
HspAI	GCGC	1 cut(s)	217
Kzo9I	GATC	2 cut(s)	157, 223
LmnI	GCTCC	2 cut(s)	25, 201
LpnPI	CCDG	2 cut(s)	84, 201
LweI	GCATC	2 cut(s)	228, 284
MaeIII	GTNAC	3 cut(s)	101, 107, 242
MalI	GATC	2 cut(s)	159, 225
MboI	GATC	2 cut(s)	157, 223
MhlI	GDGCHC	2 cut(s)	12, 198
MmeI	TCCRAC	1 cut(s)	210
MnlI	CCTC	3 cut(s)	33, 209, 226
MseI	TTAA	1 cut(s)	92
MwoI	GCNNNNNNNGC	1 cut(s)	34
NdeII	GATC	2 cut(s)	157, 223
NlaIII	CATG	1 cut(s)	142
NlaIV	GGNNCC	1 cut(s)	197
NmuCI	GTSAC	1 cut(s)	242
PcsI	WCGNNNNNNNCGW	1 cut(s)	111
PsiI	TTATAA	1 cut(s)	71
Psp124BI	GAGCTC	1 cut(s)	12
PspN4I	GGNNCC	1 cut(s)	197
PspPI	GGNCC	1 cut(s)	162
PstI	CTGCAG	1 cut(s)	100
RsaI	GTAC	1 cut(s)	57
RsaNI	GTAC	1 cut(s)	56
SacI	GAGCTC	1 cut(s)	12
SaqAI	TTAA	1 cut(s)	92
Sau3AI	GATC	2 cut(s)	157, 223
Sau96I	GGNCC	1 cut(s)	162
SduI	GDGCHC	2 cut(s)	12, 198
SetI	ASST	5 cut(s)	12, 30, 44, 103, 214
SfaNI	GCATC	2 cut(s)	228, 284
SfcI	CTRYAG	1 cut(s)	96
SinI	GGWCC	1 cut(s)	162
SmlI	CTYRAG	1 cut(s)	200
SmoI	CTYRAG	1 cut(s)	200
SstI	GAGCTC	1 cut(s)	12
StyI	CCWWGG	2 cut(s)	165, 212
TaaI	ACNGT	2 cut(s)	60, 107
TaqI	TCGA	1 cut(s)	222
TaqII	GACCGA	1 cut(s)	20
TatI	WGTACW	1 cut(s)	55
Tru1I	TTAA	1 cut(s)	92
Tru9I	TTAA	1 cut(s)	92
TseFI	GTSAC	1 cut(s)	242
Tsp45I	GTSAC	1 cut(s)	242
TspDTI	ATGAA	1 cut(s)	127
VpaK11BI	GGWCC	1 cut(s)	162

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.