RLG00000017651

Belongs to the NPH3 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0017965
Physical Location & Seq
Reverse (-)
19488148 .. 19489290
1143 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000017651

Sequence Viewer

Length: 1143 bp
ATGAGGGAGTTGATTCGAAAGCAATACAAGAGCTTGACATCGAAGGAGGAAGAAGCCCTAGCAGCCGGGGTGCATAAGTACGGGAGCGGCAACTGGAAAACCATCCTCAAATATTCCAAATTTGCTCGTTACCTCGCTCGGAAGTCATGCGGTGACCTGTGGAAGAAATGGAGGACAACGACATTTAGGGTTTCCGATGAGAAACTGAAGACCATGTCTCCCAAGGTAAACAAGGTTGTGGCTGCCCGCCTGGAGGCCATTAATGATGGGAAAATCTCTGCTTTTGCTGAAAGAAAAGAGAGGGGTATAACGGAAAGCGGTTGGACGGTGGAGGAGGAAGAAGCCCTAGCCGCCGGGGTGGAAAAATATGGGACGAGCAAGTGGAAGCACATTCTTGAAGATCCCGAATTCGGCCCTGTCCTCGCTATCCACCCGTGTACATCTCTGGCGAATAAGTGGAGGAACTTGACTGATAGTGTTTCCGAGGAAAAGCTGAGGAGAATGTCTTATAAGGTAAGGAAAGTTGTGGATGCTTCCTTGCGCAGCAAGATTAATGATGATCGGGGGAAGGAGATCGAAAGGGTTTCAAAGATGGAAGAAGACACGGAAGAGAGCACTATGTCAACTAAGGTAAGGAAGGTTGTGGATGAGGTTCAGAACTCTGCTAATCCTAATGAAGCAGTGAAGGAGACGGAAAGGGTTCCGGAGATGGCAGAAGAAGATGAGACCCTAATGATGGATGCTGAAAGTTCTGCTGATCCTGCTGAAGCAGTTAAGGAGAACGAAAGGATTTTAAAAATGAAAGAAGATGCCCAGTCTATGCTACTGTTAGCGAAAGAGATTTGGGGACATTGCTCGACAGAAGACACCAATCGAGTTTCTGCTCCTGCTTTTCCAGAAGCAGTGAAGGAGAGCAAAAGGATTTTGGAGATTGCAGAAGATATTGATCGATTTTCTGCTGCTCCTGCTCCACAAGCAGAGAAAAAGACCAAAATAATTTCGGAAATGGAAGAAGACACCAATCGAGTCCCTGCTCCTGGTCCTCCAAAAGCAGTTGAAGTGACCAAAAGGATTTCAGAGACGGCAGCAGATACCAAATCTATGCTACTGTTCATGAATCAGATTTATGAAAGAATCATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BTB NPH3

Protein Analysis

381

Amino Acids

43.11

Weight (kDa)

6.08

Isoelectric Point (pI)

50.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017965)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g17810
rosa_laevigata RLG00000017651
rosa_multiflora Rmu_sc0007406.1_g000007 Rmu_sc0013358.1_g000003
rosa_roxburghii Rroxscaffold_2G00135440
rosa_rugosa Rorug02G0151700
rosa_samantha Rh2AG200100 Rh2BG212800 Rh2CG204800 Rh2DG207700
rosa_wichuraiana Rw2G015930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 510
Acc16I TGCGCA 1 cut(s) 542
AccBSI CCGCTC 1 cut(s) 87
AccIII TCCGGA 1 cut(s) 703
AciI CCGC 5 cut(s) 87, 150, 247, 318, 351
AclWI GGATC 2 cut(s) 395, 752
AcsI RAATTY 2 cut(s) 119, 407
AcuI CTGAAG 2 cut(s) 227, 786
AfaI GTAC 2 cut(s) 80, 439
AfiI CCNNNNNNNGG 4 cut(s) 253, 410, 736, 1037
AgsI TTSAA 3 cut(s) 398, 588, 1058
AjnI CCWGG 2 cut(s) 249, 1036
AluBI AGCT 2 cut(s) 33, 493
AluI AGCT 2 cut(s) 33, 493
Alw21I GWGCWC 1 cut(s) 617
Alw26I GTCTC 4 cut(s) 222, 683, 719, 1073
AlwI GGATC 2 cut(s) 395, 752
Aor13HI TCCGGA 1 cut(s) 703
AoxI GGCC 2 cut(s) 255, 412
ApeKI GCWGC 5 cut(s) 62, 242, 543, 959, 1085
ApoI RAATTY 2 cut(s) 119, 407
AseI ATTAAT 2 cut(s) 261, 552
Asp700I GAANNNNTTC 1 cut(s) 699
AspLEI GCGC 1 cut(s) 543
AspS9I GGNCC 2 cut(s) 413, 1040
AsuC2I CCSGG 2 cut(s) 67, 355
AsuHPI GGTGA 1 cut(s) 164
AsuII TTCGAA 1 cut(s) 16
AvaII GGWCC 1 cut(s) 1040
BbsI GAAGAC 4 cut(s) 215, 606, 870, 1020
Bbv12I GWGCWC 1 cut(s) 617
BbvCI CCTCAGC 1 cut(s) 494
BbvI GCAGC 5 cut(s) 74, 229, 555, 946, 1097
BccI CCATC 5 cut(s) 110, 260, 586, 703, 730
BceAI ACGGC 1 cut(s) 1098
BciT130I CCWGG 2 cut(s) 251, 1038
BcnI CCSGG 2 cut(s) 67, 355
BcoDI GTCTC 4 cut(s) 222, 683, 719, 1073
BfaI CTAG 2 cut(s) 59, 347
BisI GCNGC 7 cut(s) 63, 88, 243, 351, 544, 960, 1086
BlsI GCNGC 7 cut(s) 64, 89, 244, 352, 545, 961, 1087
Bme1390I CCNGG 4 cut(s) 67, 251, 355, 1038
Bme18I GGWCC 1 cut(s) 1040
BmgT120I GGNCC 2 cut(s) 413, 1040
BmiI GGNNCC 1 cut(s) 702
BmrFI CCNGG 4 cut(s) 67, 251, 355, 1038
BmrI ACTGGG 1 cut(s) 808
BmsI GCATC 3 cut(s) 520, 730, 799
BmuI ACTGGG 1 cut(s) 808
BpiI GAAGAC 4 cut(s) 215, 606, 870, 1020
BpmI CTGGAG 1 cut(s) 272
Bpu10I CCTNAGC 1 cut(s) 494
Bpu14I TTCGAA 1 cut(s) 16
BpuMI CCSGG 2 cut(s) 67, 355
Bsa29I ATCGAT 1 cut(s) 949
BsaBI GATNNNNATC 1 cut(s) 945
BsaI GGTCTC 1 cut(s) 719
BsaJI CCNNGG 4 cut(s) 66, 222, 354, 483
BsaWI WCCGGW 1 cut(s) 703
BsaXI ACNNNNNCTCC 2 cut(s) 202, 232
Bsc4I CCNNNNNNNGG 4 cut(s) 253, 410, 736, 1037
Bse1I ACTGG 2 cut(s) 98, 814
Bse3DI GCAATG 1 cut(s) 850
Bse8I GATNNNNATC 1 cut(s) 945
BseAI TCCGGA 1 cut(s) 703
BseBI CCWGG 2 cut(s) 251, 1038
BseCI ATCGAT 1 cut(s) 949
BseDI CCNNGG 4 cut(s) 66, 222, 354, 483
BseGI GGATG 4 cut(s) 102, 535, 652, 745
BseJI GATNNNNATC 1 cut(s) 945
BseLI CCNNNNNNNGG 4 cut(s) 253, 410, 736, 1037
BseMI GCAATG 1 cut(s) 850
BseMII CTCAG 1 cut(s) 485
BseNI ACTGG 2 cut(s) 98, 814
BseRI GAGGAG 2 cut(s) 347, 511
BseXI GCAGC 5 cut(s) 74, 229, 555, 946, 1097
BshFI GGCC 2 cut(s) 257, 414
BshVI ATCGAT 1 cut(s) 949
BsiHKAI GWGCWC 1 cut(s) 617
BsiSI CCGG 3 cut(s) 66, 354, 704
BslFI GGGAC 3 cut(s) 385, 861, 1013
BslI CCNNNNNNNGG 4 cut(s) 253, 410, 736, 1037
BsmAI GTCTC 4 cut(s) 222, 683, 719, 1073
BsmBI CGTCTC 2 cut(s) 683, 1073
BsmFI GGGAC 3 cut(s) 385, 861, 1013
BsnI GGCC 2 cut(s) 257, 414
Bso31I GGTCTC 1 cut(s) 719
Bsp119I TTCGAA 1 cut(s) 16
Bsp1286I GDGCHC 1 cut(s) 617
Bsp13I TCCGGA 1 cut(s) 703
Bsp1407I TGTACA 1 cut(s) 437
Bsp143I GATC 5 cut(s) 400, 559, 573, 757, 946
BspACI CCGC 5 cut(s) 87, 150, 247, 318, 351
BspANI GGCC 2 cut(s) 257, 414
BspCNI CTCAG 1 cut(s) 486
BspDI ATCGAT 1 cut(s) 949
BspEI TCCGGA 1 cut(s) 703
BspHI TCATGA 1 cut(s) 1113
BspLI GGNNCC 1 cut(s) 702
BspPI GGATC 2 cut(s) 395, 752
BspT104I TTCGAA 1 cut(s) 16
BspTNI GGTCTC 1 cut(s) 719
BsrBI CCGCTC 1 cut(s) 87
BsrDI GCAATG 1 cut(s) 850
BsrGI TGTACA 1 cut(s) 437
BsrI ACTGG 2 cut(s) 98, 814
BssECI CCNNGG 4 cut(s) 66, 222, 354, 483
BssMI GATC 5 cut(s) 400, 559, 573, 757, 946
BssT1I CCWWGG 1 cut(s) 222
Bst2UI CCWGG 2 cut(s) 251, 1038
Bst4CI ACNGT 3 cut(s) 328, 828, 1110
Bst6I CTCTTC 1 cut(s) 603
BstAUI TGTACA 1 cut(s) 437
BstBI TTCGAA 1 cut(s) 16
BstC8I GCNNGC 1 cut(s) 247
BstDEI CTNAG 2 cut(s) 494, 627
BstEII GGTNACC 1 cut(s) 152
BstF5I GGATG 4 cut(s) 102, 535, 652, 745
BstHHI GCGC 1 cut(s) 543
BstKTI GATC 5 cut(s) 403, 562, 576, 760, 949
BstMAI GTCTC 4 cut(s) 222, 683, 719, 1073
BstMBI GATC 5 cut(s) 400, 559, 573, 757, 946
BstMWI GCNNNNNNNGC 5 cut(s) 62, 350, 761, 965, 974
BstNI CCWGG 2 cut(s) 251, 1038
BstPI GGTNACC 1 cut(s) 152
BstSCI CCNGG 4 cut(s) 65, 249, 353, 1036
BstV1I GCAGC 5 cut(s) 74, 229, 555, 946, 1097
BstV2I GAAGAC 4 cut(s) 215, 606, 870, 1020
BstX2I RGATCY 1 cut(s) 400
BstYI RGATCY 1 cut(s) 400
Bsu15I ATCGAT 1 cut(s) 949
BsuRI GGCC 2 cut(s) 257, 414
BsuTUI ATCGAT 1 cut(s) 949
BtsCI GGATG 4 cut(s) 102, 535, 652, 745
BtsI GCAGTG 2 cut(s) 687, 909
BtsIMutI CAGTG 2 cut(s) 687, 909
Cac8I GCNNGC 1 cut(s) 247
CciI TCATGA 1 cut(s) 1113
CfoI GCGC 1 cut(s) 543
Cfr13I GGNCC 2 cut(s) 413, 1040
ClaI ATCGAT 1 cut(s) 949
Csp6I GTAC 2 cut(s) 79, 438
CviAII CATG 4 cut(s) 147, 214, 1114, 1138
CviJI RGCY 9 cut(s) 33, 56, 65, 242, 257, 344, 350, 414, 493
CviKI_1 RGCY 9 cut(s) 33, 56, 65, 242, 257, 344, 350, 414, 493
CviQI GTAC 2 cut(s) 79, 438
DdeI CTNAG 2 cut(s) 494, 627
DpnI GATC 5 cut(s) 402, 561, 575, 759, 948
DpnII GATC 5 cut(s) 400, 559, 573, 757, 946
DraI TTTAAA 1 cut(s) 795
Eam1104I CTCTTC 1 cut(s) 603
EarI CTCTTC 1 cut(s) 603
Eco130I CCWWGG 1 cut(s) 222
Eco31I GGTCTC 1 cut(s) 719
Eco47I GGWCC 1 cut(s) 1040
Eco57I CTGAAG 2 cut(s) 227, 786
Eco91I GGTNACC 1 cut(s) 152
EcoO65I GGTNACC 1 cut(s) 152
EcoRI GAATTC 1 cut(s) 407
EcoRII CCWGG 2 cut(s) 249, 1036
EcoT14I CCWWGG 1 cut(s) 222
ErhI CCWWGG 1 cut(s) 222
Esp3I CGTCTC 2 cut(s) 683, 1073
FaeI CATG 4 cut(s) 150, 217, 1117, 1141
FaqI GGGAC 3 cut(s) 385, 861, 1013
FatI CATG 4 cut(s) 146, 213, 1113, 1137
FauI CCCGC 1 cut(s) 254
Fnu4HI GCNGC 7 cut(s) 63, 88, 243, 351, 544, 960, 1086
FokI GGATG 4 cut(s) 89, 542, 659, 752
Fsp4HI GCNGC 7 cut(s) 63, 88, 243, 351, 544, 960, 1086
FspBI CTAG 2 cut(s) 59, 347
FspI TGCGCA 1 cut(s) 542
GlaI GCGC 1 cut(s) 542
GluI GCNGC 7 cut(s) 63, 88, 243, 351, 544, 960, 1086
GsuI CTGGAG 1 cut(s) 272
HaeIII GGCC 2 cut(s) 257, 414
HapII CCGG 3 cut(s) 66, 354, 704
HhaI GCGC 1 cut(s) 543
Hin1II CATG 4 cut(s) 150, 217, 1117, 1141
Hin6I GCGC 1 cut(s) 541
HinP1I GCGC 1 cut(s) 541
HincII GTYRAC 1 cut(s) 624
HindII GTYRAC 1 cut(s) 624
HinfI GANTC 4 cut(s) 13, 1026, 1117, 1134
HpaII CCGG 3 cut(s) 66, 354, 704
HphI GGTGA 1 cut(s) 164
Hpy166II GTNNAC 3 cut(s) 229, 438, 624
Hpy188I TCNGA 7 cut(s) 141, 196, 484, 657, 1003, 1078, 1122
Hpy188III TCNNGA 5 cut(s) 395, 404, 704, 896, 1114
Hpy8I GTNNAC 3 cut(s) 229, 438, 624
HpyAV CCTTC 5 cut(s) 37, 562, 631, 679, 901
HpyCH4III ACNGT 3 cut(s) 328, 828, 1110
HpyCH4V TGCA 2 cut(s) 73, 935
HpyF10VI GCNNNNNNNGC 5 cut(s) 62, 350, 761, 965, 974
HpyF3I CTNAG 2 cut(s) 494, 627
Hsp92II CATG 4 cut(s) 150, 217, 1117, 1141
HspAI GCGC 1 cut(s) 541
Kpn2I TCCGGA 1 cut(s) 703
Kzo9I GATC 5 cut(s) 400, 559, 573, 757, 946
LmnI GCTCC 5 cut(s) 84, 889, 967, 973, 1039
Lsp1109I GCAGC 5 cut(s) 74, 229, 555, 946, 1097
LweI GCATC 3 cut(s) 520, 730, 799
MaeI CTAG 2 cut(s) 59, 347
MaeIII GTNAC 3 cut(s) 128, 152, 1060
MalI GATC 5 cut(s) 402, 561, 575, 759, 948
MbiI CCGCTC 1 cut(s) 87
MboI GATC 5 cut(s) 400, 559, 573, 757, 946
MflI RGATCY 1 cut(s) 400
MhlI GDGCHC 1 cut(s) 617
MluCI AATT 3 cut(s) 119, 407, 996
MlyI GAGTC 1 cut(s) 1035
MmeI TCCRAC 1 cut(s) 302
MroI TCCGGA 1 cut(s) 703
MroXI GAANNNNTTC 1 cut(s) 699
MseI TTAA 4 cut(s) 261, 552, 774, 794
MspI CCGG 3 cut(s) 66, 354, 704
MspR9I CCNGG 4 cut(s) 67, 251, 355, 1038
MvaI CCWGG 2 cut(s) 251, 1038
MwoI GCNNNNNNNGC 5 cut(s) 62, 350, 761, 965, 974
NciI CCSGG 2 cut(s) 67, 355
NdeII GATC 5 cut(s) 400, 559, 573, 757, 946
NlaIII CATG 4 cut(s) 150, 217, 1117, 1141
NlaIV GGNNCC 1 cut(s) 702
NmuCI GTSAC 2 cut(s) 152, 1060
NsbI TGCGCA 1 cut(s) 542
NspV TTCGAA 1 cut(s) 16
PagI TCATGA 1 cut(s) 1113
PdmI GAANNNNTTC 1 cut(s) 699
PfeI GAWTC 3 cut(s) 13, 1117, 1134
PflFI GACNNNGTC 1 cut(s) 214
PkrI GCNGC 7 cut(s) 64, 89, 244, 352, 545, 961, 1087
PleI GAGTC 1 cut(s) 1034
PpsI GAGTC 1 cut(s) 1034
PshBI ATTAAT 2 cut(s) 261, 552
PsiI TTATAA 1 cut(s) 510
Psp6I CCWGG 2 cut(s) 249, 1036
PspEI GGTNACC 1 cut(s) 152
PspGI CCWGG 2 cut(s) 249, 1036
PspN4I GGNNCC 1 cut(s) 702
PspPI GGNCC 2 cut(s) 413, 1040
PsuI RGATCY 1 cut(s) 400
PsyI GACNNNGTC 1 cut(s) 214
RsaI GTAC 2 cut(s) 80, 439
RsaNI GTAC 2 cut(s) 79, 438
SaqAI TTAA 4 cut(s) 261, 552, 774, 794
SatI GCNGC 7 cut(s) 63, 88, 243, 351, 544, 960, 1086
Sau3AI GATC 5 cut(s) 400, 559, 573, 757, 946
Sau96I GGNCC 2 cut(s) 413, 1040
SchI GAGTC 1 cut(s) 1035
ScrFI CCNGG 4 cut(s) 67, 251, 355, 1038
SduI GDGCHC 1 cut(s) 617
SfaNI GCATC 3 cut(s) 520, 730, 799
SfuI TTCGAA 1 cut(s) 16
SinI GGWCC 1 cut(s) 1040
Sse9I AATT 3 cut(s) 119, 407, 996
SsiI CCGC 5 cut(s) 87, 150, 247, 318, 351
SspI AATATT 1 cut(s) 113
SspMI CTAG 2 cut(s) 59, 347
StyD4I CCNGG 4 cut(s) 65, 249, 353, 1036
StyI CCWWGG 1 cut(s) 222
TaaI ACNGT 3 cut(s) 328, 828, 1110
TaqI TCGA 7 cut(s) 16, 41, 576, 857, 874, 949, 1024
TasI AATT 3 cut(s) 119, 407, 996
TatI WGTACW 1 cut(s) 437
TauI GCSGC 2 cut(s) 90, 353
TfiI GAWTC 3 cut(s) 13, 1117, 1134
Tru1I TTAA 4 cut(s) 261, 552, 774, 794
Tru9I TTAA 4 cut(s) 261, 552, 774, 794
TscAI CASTG 2 cut(s) 687, 909
TseFI GTSAC 2 cut(s) 152, 1060
TseI GCWGC 5 cut(s) 62, 242, 543, 959, 1085
Tsp45I GTSAC 2 cut(s) 152, 1060
TspDTI ATGAA 5 cut(s) 690, 815, 1102, 1130, 1143
TspGWI ACGGA 3 cut(s) 326, 620, 707
TspRI CASTG 2 cut(s) 687, 909
Tth111I GACNNNGTC 1 cut(s) 214
VpaK11BI GGWCC 1 cut(s) 1040
VspI ATTAAT 2 cut(s) 261, 552
XapI RAATTY 2 cut(s) 119, 407
XmnI GAANNNNTTC 1 cut(s) 699
XspI CTAG 2 cut(s) 59, 347
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.