Rmu_sc0007406.1_g000007

Belongs to the NPH3 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007406.1
OG0017965
Physical Location & Seq
Forward (+)
16174 .. 17331
1158 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007406.1_g000007.1.cds

Sequence Viewer

Length: 1158 bp
atgagggagttgattcgaaagcaatacaagagctggacatcgaaggaggaagaagccctagcagccggggtgcataagtacgggagcggcaactggaaaaccatcctcaaatattccaaatttgctcgttacctcgctcggaagtcatgcggtgacctgtggaagaaatggaggacaatggcatttagggtttccaatgagaaactgaagaccatgtctcccaaggtaaagaaggttgtggctgcccgcctggaggccattaatgatgggaaaaactctgcttttgctgaaagaaaagagaggggtataacgggaagcggttggacggtggaggaggaagaagccctagccgccggggtggaaaagtatgggacgaacaagtggaagcacattctcgaagatcccgaattcagccctgtcctcgctatccacccgtgtacatctctggcgaataagtggaggaacttgactgatagtgtttccgaggaaaagctgaggaggatgtcttgtaaggtaaggaaagttatggatgcttccttgcgccaaaagattaatgatgatcagggggaggagaccgaaagggtttcaaagatggaagaagacacggaagagagcactatgtcaacaaaggtaaggaaggttgtggatgatgaggttcagaactctgctaatcctaatgaggcagtgaaggagactgaaagggttccggatcatgagatggtagaagaagatgagaccctaatgatggatgttgaaagttctgctgatcgtgctgaagcagttaaggagaatgaaaggattttgaaaatgaaagaagatgccaagtctatgctactgttagcgaaagagatttggggacattgctcgacggaagacaccaatcgagtctctgctcctgcttgtccacaagcagtgaaggagagcaaaaggatttcggagattgcagaactagacattgatcggttttctgctgcccctcctccacaggcggagaaaaagaccaaaatattttcagaaatggaagaagacactgatcgaggccctgctcctgctcctccaaaagcagttgaagagaccaaaaggatttcggacacggcagaagataccaaatccatgctactgttcatgaatcagatttatgaaagattcacgcagtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BTB NPH3

Protein Analysis

385

Amino Acids

43.92

Weight (kDa)

5.86

Isoelectric Point (pI)

48.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017965)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g17810
rosa_laevigata RLG00000017651
rosa_multiflora Rmu_sc0007406.1_g000007 Rmu_sc0013358.1_g000003
rosa_roxburghii Rroxscaffold_2G00135440
rosa_rugosa Rorug02G0151700
rosa_samantha Rh2AG200100 Rh2BG212800 Rh2CG204800 Rh2DG207700
rosa_wichuraiana Rw2G015930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 87
AccIII TCCGGA 1 cut(s) 706
AciI CCGC 6 cut(s) 87, 150, 247, 318, 351, 989
AclWI GGATC 2 cut(s) 395, 717
AcsI RAATTY 2 cut(s) 119, 407
AcuI CTGAAG 2 cut(s) 227, 795
AfaI GTAC 2 cut(s) 80, 439
AfiI CCNNNNNNNGG 2 cut(s) 253, 745
AgsI TTSAA 4 cut(s) 588, 755, 805, 1070
AjnI CCWGG 1 cut(s) 249
AluBI AGCT 2 cut(s) 33, 493
AluI AGCT 2 cut(s) 33, 493
Alw21I GWGCWC 1 cut(s) 617
Alw26I GTCTC 6 cut(s) 222, 566, 686, 728, 892, 1067
AlwI GGATC 2 cut(s) 395, 717
Aor13HI TCCGGA 1 cut(s) 706
AoxI GGCC 2 cut(s) 255, 1039
ApeKI GCWGC 3 cut(s) 62, 242, 971
ApoI RAATTY 2 cut(s) 119, 407
AseI ATTAAT 2 cut(s) 261, 552
Asp700I GAANNNNTTC 1 cut(s) 702
AspLEI GCGC 1 cut(s) 543
AspS9I GGNCC 1 cut(s) 1040
AsuC2I CCSGG 2 cut(s) 67, 355
AsuHPI GGTGA 1 cut(s) 164
AsuII TTCGAA 1 cut(s) 16
BbsI GAAGAC 4 cut(s) 215, 606, 879, 1032
Bbv12I GWGCWC 1 cut(s) 617
BbvCI CCTCAGC 1 cut(s) 494
BbvI GCAGC 3 cut(s) 74, 229, 958
BccI CCATC 5 cut(s) 110, 260, 586, 712, 739
BceAI ACGGC 1 cut(s) 1110
BciT130I CCWGG 1 cut(s) 251
BclI TGATCA 1 cut(s) 559
BcnI CCSGG 2 cut(s) 67, 355
BcoDI GTCTC 6 cut(s) 222, 566, 686, 728, 892, 1067
BfaI CTAG 3 cut(s) 59, 347, 950
BisI GCNGC 5 cut(s) 63, 88, 243, 351, 972
BlsI GCNGC 5 cut(s) 64, 89, 244, 352, 973
Bme1390I CCNGG 3 cut(s) 67, 251, 355
BmgT120I GGNCC 1 cut(s) 1040
BmiI GGNNCC 1 cut(s) 705
BmrFI CCNGG 3 cut(s) 67, 251, 355
BmsI GCATC 2 cut(s) 520, 808
BpiI GAAGAC 4 cut(s) 215, 606, 879, 1032
BpmI CTGGAG 1 cut(s) 272
Bpu10I CCTNAGC 1 cut(s) 494
Bpu14I TTCGAA 1 cut(s) 16
BpuMI CCSGG 2 cut(s) 67, 355
BsaI GGTCTC 3 cut(s) 566, 728, 1067
BsaJI CCNNGG 4 cut(s) 66, 222, 354, 483
BsaWI WCCGGW 1 cut(s) 706
BsaXI ACNNNNNCTCC 2 cut(s) 202, 232
Bsc4I CCNNNNNNNGG 2 cut(s) 253, 745
Bse1I ACTGG 1 cut(s) 98
Bse3DI GCAATG 1 cut(s) 859
BseAI TCCGGA 1 cut(s) 706
BseBI CCWGG 1 cut(s) 251
BseDI CCNNGG 4 cut(s) 66, 222, 354, 483
BseGI GGATG 5 cut(s) 102, 507, 535, 652, 754
BseLI CCNNNNNNNGG 2 cut(s) 253, 745
BseMI GCAATG 1 cut(s) 859
BseMII CTCAG 1 cut(s) 485
BseNI ACTGG 1 cut(s) 98
BseRI GAGGAG 5 cut(s) 347, 511, 584, 969, 1044
BseXI GCAGC 3 cut(s) 74, 229, 958
BshFI GGCC 2 cut(s) 257, 1041
BsiHKAI GWGCWC 1 cut(s) 617
BsiSI CCGG 3 cut(s) 66, 354, 707
BslFI GGGAC 2 cut(s) 385, 870
BslI CCNNNNNNNGG 2 cut(s) 253, 745
BsmAI GTCTC 6 cut(s) 222, 566, 686, 728, 892, 1067
BsmFI GGGAC 2 cut(s) 385, 870
BsnI GGCC 2 cut(s) 257, 1041
Bso31I GGTCTC 3 cut(s) 566, 728, 1067
Bsp119I TTCGAA 1 cut(s) 16
Bsp1286I GDGCHC 1 cut(s) 617
Bsp13I TCCGGA 1 cut(s) 706
Bsp1407I TGTACA 1 cut(s) 437
Bsp143I GATC 6 cut(s) 400, 559, 709, 766, 958, 1033
BspACI CCGC 6 cut(s) 87, 150, 247, 318, 351, 989
BspANI GGCC 2 cut(s) 257, 1041
BspCNI CTCAG 1 cut(s) 486
BspEI TCCGGA 1 cut(s) 706
BspHI TCATGA 2 cut(s) 712, 1125
BspLI GGNNCC 1 cut(s) 705
BspPI GGATC 2 cut(s) 395, 717
BspT104I TTCGAA 1 cut(s) 16
BspTNI GGTCTC 3 cut(s) 566, 728, 1067
BsrBI CCGCTC 1 cut(s) 87
BsrDI GCAATG 1 cut(s) 859
BsrGI TGTACA 1 cut(s) 437
BsrI ACTGG 1 cut(s) 98
BssECI CCNNGG 4 cut(s) 66, 222, 354, 483
BssMI GATC 6 cut(s) 400, 559, 709, 766, 958, 1033
BssT1I CCWWGG 1 cut(s) 222
Bst2UI CCWGG 1 cut(s) 251
Bst4CI ACNGT 3 cut(s) 328, 837, 1122
Bst6I CTCTTC 2 cut(s) 603, 1065
BstAUI TGTACA 1 cut(s) 437
BstBI TTCGAA 1 cut(s) 16
BstC8I GCNNGC 1 cut(s) 247
BstDEI CTNAG 1 cut(s) 494
BstEII GGTNACC 1 cut(s) 152
BstF5I GGATG 5 cut(s) 102, 507, 535, 652, 754
BstHHI GCGC 1 cut(s) 543
BstKTI GATC 6 cut(s) 403, 562, 712, 769, 961, 1036
BstMAI GTCTC 6 cut(s) 222, 566, 686, 728, 892, 1067
BstMBI GATC 6 cut(s) 400, 559, 709, 766, 958, 1033
BstMWI GCNNNNNNNGC 3 cut(s) 62, 350, 770
BstNI CCWGG 1 cut(s) 251
BstPI GGTNACC 1 cut(s) 152
BstSCI CCNGG 3 cut(s) 65, 249, 353
BstV1I GCAGC 3 cut(s) 74, 229, 958
BstV2I GAAGAC 4 cut(s) 215, 606, 879, 1032
BstX2I RGATCY 1 cut(s) 400
BstYI RGATCY 1 cut(s) 400
BsuRI GGCC 2 cut(s) 257, 1041
BtsCI GGATG 5 cut(s) 102, 507, 535, 652, 754
BtsI GCAGTG 2 cut(s) 690, 918
BtsIMutI CAGTG 3 cut(s) 690, 918, 1029
Cac8I GCNNGC 1 cut(s) 247
CciI TCATGA 2 cut(s) 712, 1125
CfoI GCGC 1 cut(s) 543
Cfr13I GGNCC 1 cut(s) 1040
Csp6I GTAC 2 cut(s) 79, 438
CviAII CATG 5 cut(s) 147, 214, 713, 1114, 1126
CviQI GTAC 2 cut(s) 79, 438
DdeI CTNAG 1 cut(s) 494
DpnI GATC 6 cut(s) 402, 561, 711, 768, 960, 1035
DpnII GATC 6 cut(s) 400, 559, 709, 766, 958, 1033
Eam1104I CTCTTC 2 cut(s) 603, 1065
EarI CTCTTC 2 cut(s) 603, 1065
EciI GGCGGA 1 cut(s) 1004
Eco130I CCWWGG 1 cut(s) 222
Eco31I GGTCTC 3 cut(s) 566, 728, 1067
Eco57I CTGAAG 2 cut(s) 227, 795
Eco91I GGTNACC 1 cut(s) 152
EcoO109I RGGNCCY 1 cut(s) 1040
EcoO65I GGTNACC 1 cut(s) 152
EcoRI GAATTC 1 cut(s) 407
EcoRII CCWGG 1 cut(s) 249
EcoT14I CCWWGG 1 cut(s) 222
ErhI CCWWGG 1 cut(s) 222
FaeI CATG 5 cut(s) 150, 217, 716, 1117, 1129
FaqI GGGAC 2 cut(s) 385, 870
FatI CATG 5 cut(s) 146, 213, 712, 1113, 1125
FauI CCCGC 1 cut(s) 254
FbaI TGATCA 1 cut(s) 559
Fnu4HI GCNGC 5 cut(s) 63, 88, 243, 351, 972
FokI GGATG 5 cut(s) 89, 514, 542, 659, 761
Fsp4HI GCNGC 5 cut(s) 63, 88, 243, 351, 972
FspBI CTAG 3 cut(s) 59, 347, 950
GlaI GCGC 1 cut(s) 542
GluI GCNGC 5 cut(s) 63, 88, 243, 351, 972
GsuI CTGGAG 1 cut(s) 272
HaeIII GGCC 2 cut(s) 257, 1041
HapII CCGG 3 cut(s) 66, 354, 707
HhaI GCGC 1 cut(s) 543
Hin1II CATG 5 cut(s) 150, 217, 716, 1117, 1129
Hin6I GCGC 1 cut(s) 541
HinP1I GCGC 1 cut(s) 541
HincII GTYRAC 1 cut(s) 624
HindII GTYRAC 1 cut(s) 624
HinfI GANTC 4 cut(s) 13, 885, 1129, 1146
HpaII CCGG 3 cut(s) 66, 354, 707
HphI GGTGA 1 cut(s) 164
Hpy166II GTNNAC 3 cut(s) 438, 624, 905
Hpy188I TCNGA 7 cut(s) 141, 484, 660, 937, 1015, 1090, 1134
Hpy188III TCNNGA 5 cut(s) 395, 404, 707, 713, 1126
Hpy8I GTNNAC 3 cut(s) 438, 624, 905
Hpy99I CGWCG 1 cut(s) 871
HpyAV CCTTC 5 cut(s) 37, 226, 631, 682, 910
HpyCH4III ACNGT 3 cut(s) 328, 837, 1122
HpyCH4V TGCA 2 cut(s) 73, 944
HpyF10VI GCNNNNNNNGC 3 cut(s) 62, 350, 770
HpyF3I CTNAG 1 cut(s) 494
Hsp92II CATG 5 cut(s) 150, 217, 716, 1117, 1129
HspAI GCGC 1 cut(s) 541
Kpn2I TCCGGA 1 cut(s) 706
Ksp22I TGATCA 1 cut(s) 559
Kzo9I GATC 6 cut(s) 400, 559, 709, 766, 958, 1033
LmnI GCTCC 4 cut(s) 84, 898, 1051, 1057
Lsp1109I GCAGC 3 cut(s) 74, 229, 958
LweI GCATC 2 cut(s) 520, 808
MaeI CTAG 3 cut(s) 59, 347, 950
MaeIII GTNAC 2 cut(s) 128, 152
MalI GATC 6 cut(s) 402, 561, 711, 768, 960, 1035
MbiI CCGCTC 1 cut(s) 87
MboI GATC 6 cut(s) 400, 559, 709, 766, 958, 1033
MflI RGATCY 1 cut(s) 400
MhlI GDGCHC 1 cut(s) 617
MluCI AATT 2 cut(s) 119, 407
MlyI GAGTC 1 cut(s) 894
MmeI TCCRAC 1 cut(s) 302
MroI TCCGGA 1 cut(s) 706
MroXI GAANNNNTTC 1 cut(s) 702
MseI TTAA 3 cut(s) 261, 552, 783
MspI CCGG 3 cut(s) 66, 354, 707
MspR9I CCNGG 3 cut(s) 67, 251, 355
MvaI CCWGG 1 cut(s) 251
MwoI GCNNNNNNNGC 3 cut(s) 62, 350, 770
NciI CCSGG 2 cut(s) 67, 355
NdeII GATC 6 cut(s) 400, 559, 709, 766, 958, 1033
NlaIII CATG 5 cut(s) 150, 217, 716, 1117, 1129
NlaIV GGNNCC 1 cut(s) 705
NmuCI GTSAC 1 cut(s) 152
NspV TTCGAA 1 cut(s) 16
PagI TCATGA 2 cut(s) 712, 1125
PcsI WCGNNNNNNNCGW 1 cut(s) 402
PdmI GAANNNNTTC 1 cut(s) 702
PfeI GAWTC 3 cut(s) 13, 1129, 1146
PflFI GACNNNGTC 1 cut(s) 214
PkrI GCNGC 5 cut(s) 64, 89, 244, 352, 973
PleI GAGTC 1 cut(s) 893
PpsI GAGTC 1 cut(s) 893
PshBI ATTAAT 2 cut(s) 261, 552
Psp6I CCWGG 1 cut(s) 249
PspEI GGTNACC 1 cut(s) 152
PspGI CCWGG 1 cut(s) 249
PspN4I GGNNCC 1 cut(s) 705
PspPI GGNCC 1 cut(s) 1040
PsuI RGATCY 1 cut(s) 400
PsyI GACNNNGTC 1 cut(s) 214
RsaI GTAC 2 cut(s) 80, 439
RsaNI GTAC 2 cut(s) 79, 438
SaqAI TTAA 3 cut(s) 261, 552, 783
SatI GCNGC 5 cut(s) 63, 88, 243, 351, 972
Sau3AI GATC 6 cut(s) 400, 559, 709, 766, 958, 1033
Sau96I GGNCC 1 cut(s) 1040
SchI GAGTC 1 cut(s) 894
ScrFI CCNGG 3 cut(s) 67, 251, 355
SduI GDGCHC 1 cut(s) 617
SfaNI GCATC 2 cut(s) 520, 808
SfuI TTCGAA 1 cut(s) 16
Sse9I AATT 2 cut(s) 119, 407
SsiI CCGC 6 cut(s) 87, 150, 247, 318, 351, 989
SspI AATATT 2 cut(s) 113, 1008
SspMI CTAG 3 cut(s) 59, 347, 950
StyD4I CCNGG 3 cut(s) 65, 249, 353
StyI CCWWGG 1 cut(s) 222
TaaI ACNGT 3 cut(s) 328, 837, 1122
TaqI TCGA 6 cut(s) 16, 41, 396, 866, 883, 1036
TaqII GACCGA 1 cut(s) 590
TasI AATT 2 cut(s) 119, 407
TatI WGTACW 1 cut(s) 437
TauI GCSGC 2 cut(s) 90, 353
TfiI GAWTC 3 cut(s) 13, 1129, 1146
Tru1I TTAA 3 cut(s) 261, 552, 783
Tru9I TTAA 3 cut(s) 261, 552, 783
TscAI CASTG 3 cut(s) 690, 918, 1036
TseFI GTSAC 1 cut(s) 152
TseI GCWGC 3 cut(s) 62, 242, 971
Tsp45I GTSAC 1 cut(s) 152
TspDTI ATGAA 5 cut(s) 807, 824, 1114, 1142, 1155
TspGWI ACGGA 2 cut(s) 620, 884
TspRI CASTG 3 cut(s) 690, 918, 1036
Tth111I GACNNNGTC 1 cut(s) 214
VspI ATTAAT 2 cut(s) 261, 552
XapI RAATTY 2 cut(s) 119, 407
XmnI GAANNNNTTC 1 cut(s) 702
XspI CTAG 3 cut(s) 59, 347, 950
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.