Rroxscaffold_2G00135440

Belongs to the NPH3 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0017965
Physical Location & Seq
Forward (+)
73013916 .. 73014965
1050 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00135440.1

Sequence Viewer

Length: 1050 bp
ATGAGGGAGTTGATTCGAAAGCAAAACAAGAGCTGGACATCGAAGGAGGAAGAAGCCCTAGCAGCCGGGGTGCATAAGTACGGGAGCGGCAACTGGAAAACCATCCTCAAATATTCCAAATTTGCTCGTTACCTCTCTCGGAAGTCATGCGGTGACCTGTGGAAGAAATGGAGGACAATGGCATTTAGGGTTTCCGATGAGAAACTGAAGACCATGTCTCCCAAGGTAAAGAAGGTTGTTGCTGCCCGCCTGGAGGCCATTAATGATGGGAAAAGCTCTGCTTTTGCTGAAAGAAAAGAGAGGGGTATAACGGGAAGCGGTTGGACGGTGGAGGAGAAAGAAGCCCTAGCCTCCGGGGTGGAGAAGTATGGGACGAGCAAGTGGAAGCACATTCTTGAAGATCCCGAATTCGGCCCTGTCCTCGCTATCCACCCGTGTACATCTCTGGCGGATAAGTGGAGGAACTTGACTGATAGTGTTTCCGAGGAAAAGCTGAGGAGGATGTCTTATAAGGTGAGGAAAGTTGTGGATGCCTCCTTGCTCAGCAAGATTAATGATGATCAGGGGGAGGAGACCGAAAGGGTTTCAAAGATGGAAGAAGACACGGAAGAGAGCACTATGTCGGTAAGGAAGGTTGTGGATGAGGTTCAGAACTCTGCTAATCCTAATGAAGCAGTTAAGGAGAATGAAAGGATTTTAAAAATGAAAGAAGATGCCAAGTCTATGCTACTGTTAGCGAAAGAGATTTGGGGACATTGCTCGACAGAAGACACCAATCGAGTTTCTGCTCCTGCTTTTCCAGAAGCAGAGAAGGAGAGCAAAAGGATTTCGGAGATTGCAGAAGACATTGATCGATTTTGTGCTGCTCCTGCTCCACAAGCAGAGAAAAAGACCGAAATAATTTCAGAAATGGAAGAAGACACCAACCGAGTGCCTGCTCCTGCTCCTCCAAAAGCAGTTGAAGAGATCAAGAGGATTTCAGAGACGGCAGAAGATACAAAATCTATGCTACTGTTCATGAATCAGATTTATGAAAGATTCATGAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BTB NPH3

Protein Analysis

349

Amino Acids

39.78

Weight (kDa)

7.59

Isoelectric Point (pI)

48.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 10 - 58 2.3e-07 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017965)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g17810
rosa_laevigata RLG00000017651
rosa_multiflora Rmu_sc0007406.1_g000007 Rmu_sc0013358.1_g000003
rosa_roxburghii Rroxscaffold_2G00135440
rosa_rugosa Rorug02G0151700
rosa_samantha Rh2AG200100 Rh2BG212800 Rh2CG204800 Rh2DG207700
rosa_wichuraiana Rw2G015930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 510
AccBSI CCGCTC 1 cut(s) 87
AciI CCGC 5 cut(s) 87, 150, 247, 318, 449
AclWI GGATC 1 cut(s) 395
AcsI RAATTY 2 cut(s) 119, 407
AcuI CTGAAG 1 cut(s) 227
AfaI GTAC 2 cut(s) 80, 439
AfiI CCNNNNNNNGG 2 cut(s) 253, 410
AgsI TTSAA 3 cut(s) 398, 588, 962
AjnI CCWGG 1 cut(s) 249
AluBI AGCT 3 cut(s) 33, 276, 493
AluI AGCT 3 cut(s) 33, 276, 493
Alw21I GWGCWC 1 cut(s) 617
Alw26I GTCTC 3 cut(s) 222, 566, 977
AlwI GGATC 1 cut(s) 395
AoxI GGCC 2 cut(s) 255, 412
ApeKI GCWGC 3 cut(s) 62, 242, 863
ApoI RAATTY 2 cut(s) 119, 407
AseI ATTAAT 2 cut(s) 261, 552
AspS9I GGNCC 1 cut(s) 413
AsuC2I CCSGG 2 cut(s) 67, 355
AsuHPI GGTGA 2 cut(s) 164, 526
AsuII TTCGAA 1 cut(s) 16
BbsI GAAGAC 5 cut(s) 215, 606, 774, 849, 924
Bbv12I GWGCWC 1 cut(s) 617
BbvCI CCTCAGC 1 cut(s) 494
BbvI GCAGC 3 cut(s) 74, 229, 850
BccI CCATC 3 cut(s) 110, 260, 586
BceAI ACGGC 1 cut(s) 1002
BciT130I CCWGG 1 cut(s) 251
BclI TGATCA 1 cut(s) 559
BcnI CCSGG 2 cut(s) 67, 355
BcoDI GTCTC 3 cut(s) 222, 566, 977
BfaI CTAG 2 cut(s) 59, 347
BisI GCNGC 4 cut(s) 63, 88, 243, 864
BlpI GCTNAGC 1 cut(s) 542
BlsI GCNGC 4 cut(s) 64, 89, 244, 865
Bme1390I CCNGG 3 cut(s) 67, 251, 355
BmgT120I GGNCC 1 cut(s) 413
BmrFI CCNGG 3 cut(s) 67, 251, 355
BmsI GCATC 2 cut(s) 520, 703
BpiI GAAGAC 5 cut(s) 215, 606, 774, 849, 924
BpmI CTGGAG 1 cut(s) 272
Bpu10I CCTNAGC 1 cut(s) 494
Bpu1102I GCTNAGC 1 cut(s) 542
Bpu14I TTCGAA 1 cut(s) 16
BpuMI CCSGG 2 cut(s) 67, 355
Bsa29I ATCGAT 1 cut(s) 853
BsaI GGTCTC 1 cut(s) 566
BsaJI CCNNGG 4 cut(s) 66, 222, 354, 483
BsaXI ACNNNNNCTCC 2 cut(s) 202, 232
Bsc4I CCNNNNNNNGG 2 cut(s) 253, 410
Bse1I ACTGG 1 cut(s) 98
Bse3DI GCAATG 1 cut(s) 754
BseBI CCWGG 1 cut(s) 251
BseCI ATCGAT 1 cut(s) 853
BseDI CCNNGG 4 cut(s) 66, 222, 354, 483
BseGI GGATG 4 cut(s) 102, 507, 535, 646
BseLI CCNNNNNNNGG 2 cut(s) 253, 410
BseMI GCAATG 1 cut(s) 754
BseMII CTCAG 2 cut(s) 485, 556
BseNI ACTGG 1 cut(s) 98
BseRI GAGGAG 4 cut(s) 347, 511, 584, 936
BseXI GCAGC 3 cut(s) 74, 229, 850
BshFI GGCC 2 cut(s) 257, 414
BshVI ATCGAT 1 cut(s) 853
BsiHKAI GWGCWC 1 cut(s) 617
BsiSI CCGG 2 cut(s) 66, 354
BslFI GGGAC 2 cut(s) 385, 765
BslI CCNNNNNNNGG 2 cut(s) 253, 410
BsmAI GTCTC 3 cut(s) 222, 566, 977
BsmBI CGTCTC 1 cut(s) 977
BsmFI GGGAC 2 cut(s) 385, 765
BsnI GGCC 2 cut(s) 257, 414
Bso31I GGTCTC 1 cut(s) 566
Bsp119I TTCGAA 1 cut(s) 16
Bsp1286I GDGCHC 1 cut(s) 617
Bsp1407I TGTACA 1 cut(s) 437
Bsp143I GATC 4 cut(s) 400, 559, 850, 966
Bsp1720I GCTNAGC 1 cut(s) 542
BspACI CCGC 5 cut(s) 87, 150, 247, 318, 449
BspANI GGCC 2 cut(s) 257, 414
BspCNI CTCAG 2 cut(s) 486, 555
BspDI ATCGAT 1 cut(s) 853
BspHI TCATGA 2 cut(s) 1017, 1041
BspPI GGATC 1 cut(s) 395
BspT104I TTCGAA 1 cut(s) 16
BspTNI GGTCTC 1 cut(s) 566
BsrBI CCGCTC 1 cut(s) 87
BsrDI GCAATG 1 cut(s) 754
BsrGI TGTACA 1 cut(s) 437
BsrI ACTGG 1 cut(s) 98
BssECI CCNNGG 4 cut(s) 66, 222, 354, 483
BssMI GATC 4 cut(s) 400, 559, 850, 966
BssT1I CCWWGG 1 cut(s) 222
Bst2UI CCWGG 1 cut(s) 251
Bst4CI ACNGT 3 cut(s) 328, 732, 1014
Bst6I CTCTTC 2 cut(s) 603, 957
BstAUI TGTACA 1 cut(s) 437
BstBI TTCGAA 1 cut(s) 16
BstC8I GCNNGC 2 cut(s) 247, 936
BstDEI CTNAG 2 cut(s) 494, 542
BstEII GGTNACC 1 cut(s) 152
BstF5I GGATG 4 cut(s) 102, 507, 535, 646
BstKTI GATC 4 cut(s) 403, 562, 853, 969
BstMAI GTCTC 3 cut(s) 222, 566, 977
BstMBI GATC 4 cut(s) 400, 559, 850, 966
BstMWI GCNNNNNNNGC 3 cut(s) 62, 869, 878
BstNI CCWGG 1 cut(s) 251
BstPI GGTNACC 1 cut(s) 152
BstSCI CCNGG 3 cut(s) 65, 249, 353
BstV1I GCAGC 3 cut(s) 74, 229, 850
BstV2I GAAGAC 5 cut(s) 215, 606, 774, 849, 924
BstX2I RGATCY 1 cut(s) 400
BstYI RGATCY 1 cut(s) 400
Bsu15I ATCGAT 1 cut(s) 853
BsuRI GGCC 2 cut(s) 257, 414
BsuTUI ATCGAT 1 cut(s) 853
BtsCI GGATG 4 cut(s) 102, 507, 535, 646
Cac8I GCNNGC 2 cut(s) 247, 936
CciI TCATGA 2 cut(s) 1017, 1041
Cfr13I GGNCC 1 cut(s) 413
ClaI ATCGAT 1 cut(s) 853
Csp6I GTAC 2 cut(s) 79, 438
CviAII CATG 4 cut(s) 147, 214, 1018, 1042
CviJI RGCY 9 cut(s) 33, 56, 65, 257, 276, 344, 350, 414, 493
CviKI_1 RGCY 9 cut(s) 33, 56, 65, 257, 276, 344, 350, 414, 493
CviQI GTAC 2 cut(s) 79, 438
DdeI CTNAG 2 cut(s) 494, 542
DpnI GATC 4 cut(s) 402, 561, 852, 968
DpnII GATC 4 cut(s) 400, 559, 850, 966
DraI TTTAAA 1 cut(s) 699
Eam1104I CTCTTC 2 cut(s) 603, 957
EarI CTCTTC 2 cut(s) 603, 957
EciI GGCGGA 1 cut(s) 464
Eco130I CCWWGG 1 cut(s) 222
Eco31I GGTCTC 1 cut(s) 566
Eco57I CTGAAG 1 cut(s) 227
Eco91I GGTNACC 1 cut(s) 152
EcoO65I GGTNACC 1 cut(s) 152
EcoRI GAATTC 1 cut(s) 407
EcoRII CCWGG 1 cut(s) 249
EcoT14I CCWWGG 1 cut(s) 222
ErhI CCWWGG 1 cut(s) 222
Esp3I CGTCTC 1 cut(s) 977
FaeI CATG 4 cut(s) 150, 217, 1021, 1045
FalI AAGNNNNNCTT 2 cut(s) 265, 297
FaqI GGGAC 2 cut(s) 385, 765
FatI CATG 4 cut(s) 146, 213, 1017, 1041
FauI CCCGC 1 cut(s) 254
FbaI TGATCA 1 cut(s) 559
Fnu4HI GCNGC 4 cut(s) 63, 88, 243, 864
FokI GGATG 4 cut(s) 89, 514, 542, 653
Fsp4HI GCNGC 4 cut(s) 63, 88, 243, 864
FspBI CTAG 2 cut(s) 59, 347
GluI GCNGC 4 cut(s) 63, 88, 243, 864
GsuI CTGGAG 1 cut(s) 272
HaeIII GGCC 2 cut(s) 257, 414
HapII CCGG 2 cut(s) 66, 354
Hin1II CATG 4 cut(s) 150, 217, 1021, 1045
HinfI GANTC 3 cut(s) 13, 1021, 1038
HpaII CCGG 2 cut(s) 66, 354
HphI GGTGA 2 cut(s) 164, 526
Hpy166II GTNNAC 1 cut(s) 438
Hpy188I TCNGA 8 cut(s) 141, 196, 484, 651, 832, 907, 982, 1026
Hpy188III TCNNGA 6 cut(s) 395, 404, 800, 970, 1018, 1042
Hpy8I GTNNAC 1 cut(s) 438
HpyAV CCTTC 4 cut(s) 37, 226, 625, 805
HpyCH4III ACNGT 3 cut(s) 328, 732, 1014
HpyCH4V TGCA 2 cut(s) 73, 839
HpyF10VI GCNNNNNNNGC 3 cut(s) 62, 869, 878
HpyF3I CTNAG 2 cut(s) 494, 542
Hsp92II CATG 4 cut(s) 150, 217, 1021, 1045
Ksp22I TGATCA 1 cut(s) 559
Kzo9I GATC 4 cut(s) 400, 559, 850, 966
LmnI GCTCC 6 cut(s) 84, 793, 871, 877, 943, 949
Lsp1109I GCAGC 3 cut(s) 74, 229, 850
LweI GCATC 2 cut(s) 520, 703
MaeI CTAG 2 cut(s) 59, 347
MaeIII GTNAC 2 cut(s) 128, 152
MalI GATC 4 cut(s) 402, 561, 852, 968
MbiI CCGCTC 1 cut(s) 87
MboI GATC 4 cut(s) 400, 559, 850, 966
MflI RGATCY 1 cut(s) 400
MhlI GDGCHC 1 cut(s) 617
MluCI AATT 3 cut(s) 119, 407, 900
MmeI TCCRAC 1 cut(s) 302
MseI TTAA 4 cut(s) 261, 552, 678, 698
MspI CCGG 2 cut(s) 66, 354
MspR9I CCNGG 3 cut(s) 67, 251, 355
MvaI CCWGG 1 cut(s) 251
MwoI GCNNNNNNNGC 3 cut(s) 62, 869, 878
NciI CCSGG 2 cut(s) 67, 355
NdeII GATC 4 cut(s) 400, 559, 850, 966
NlaIII CATG 4 cut(s) 150, 217, 1021, 1045
NmuCI GTSAC 1 cut(s) 152
NspV TTCGAA 1 cut(s) 16
PagI TCATGA 2 cut(s) 1017, 1041
PfeI GAWTC 3 cut(s) 13, 1021, 1038
PflFI GACNNNGTC 1 cut(s) 214
PkrI GCNGC 4 cut(s) 64, 89, 244, 865
PshBI ATTAAT 2 cut(s) 261, 552
PsiI TTATAA 1 cut(s) 510
Psp6I CCWGG 1 cut(s) 249
PspEI GGTNACC 1 cut(s) 152
PspGI CCWGG 1 cut(s) 249
PspPI GGNCC 1 cut(s) 413
PsuI RGATCY 1 cut(s) 400
PsyI GACNNNGTC 1 cut(s) 214
RsaI GTAC 2 cut(s) 80, 439
RsaNI GTAC 2 cut(s) 79, 438
SaqAI TTAA 4 cut(s) 261, 552, 678, 698
SatI GCNGC 4 cut(s) 63, 88, 243, 864
Sau3AI GATC 4 cut(s) 400, 559, 850, 966
Sau96I GGNCC 1 cut(s) 413
ScrFI CCNGG 3 cut(s) 67, 251, 355
SduI GDGCHC 1 cut(s) 617
SfaNI GCATC 2 cut(s) 520, 703
SfuI TTCGAA 1 cut(s) 16
Sse9I AATT 3 cut(s) 119, 407, 900
SsiI CCGC 5 cut(s) 87, 150, 247, 318, 449
SspI AATATT 1 cut(s) 113
SspMI CTAG 2 cut(s) 59, 347
StyD4I CCNGG 3 cut(s) 65, 249, 353
StyI CCWWGG 1 cut(s) 222
TaaI ACNGT 3 cut(s) 328, 732, 1014
TaqI TCGA 5 cut(s) 16, 41, 761, 778, 853
TaqII GACCGA 2 cut(s) 590, 908
TasI AATT 3 cut(s) 119, 407, 900
TatI WGTACW 1 cut(s) 437
TauI GCSGC 1 cut(s) 90
TfiI GAWTC 3 cut(s) 13, 1021, 1038
Tru1I TTAA 4 cut(s) 261, 552, 678, 698
Tru9I TTAA 4 cut(s) 261, 552, 678, 698
TseFI GTSAC 1 cut(s) 152
TseI GCWGC 3 cut(s) 62, 242, 863
Tsp45I GTSAC 1 cut(s) 152
TspDTI ATGAA 7 cut(s) 684, 702, 719, 1006, 1030, 1034, 1047
TspGWI ACGGA 1 cut(s) 620
Tth111I GACNNNGTC 1 cut(s) 214
VspI ATTAAT 2 cut(s) 261, 552
XapI RAATTY 2 cut(s) 119, 407
XspI CTAG 2 cut(s) 59, 347
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.