Rh7CG080700
MYB Family

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0016333
Physical Location & Seq
Reverse (-)
5865951 .. 5866481
531 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG080700.1

Sequence Viewer

Length: 531 bp
ATGAACTATCTCCGACCAGGTATAAAGAGAGGTAACATAAGTCCTGATGAGGAAGACCTTATTGTGAGGCTTCATTCACTTCTGGGAAATCGATGGTCTCTAATTGCTGGAAGACTCCCCGGTCGAACCGATAATCAGATCAAGAACTACTGGAATACCAACCACAGCAAAAGGCTCAACAACGCTGGTAGTACTGAAAAAGGTGTATCGAGTGTTGAAGGACAACTCAAGAAGGATGACCGAGGCTGTGTAGCAAAGGTTAAGGTTCATCAACCAAAGGCCATTCGAGTTTCTGCAAACTCAATCATAAGAAAAAATAACATGTTAGCTGAATTGGGTCATCATGATGCAGAGGTTTCTAATGATCTTCATGACCATAAACATTTTGGAGAGGCCTTGGTTTGCGAAAATGTGATGGATTTTGATGTTTTTATTCAAGGGTATGAGGAATATCAGCAGCTTCTTCTCAAGGCAGATCAAGATCTCGATGGTGTTCATTTGGATTCTTTTGTTGACTCCTTGTTGATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

176

Amino Acids

19.88

Weight (kDa)

6.29

Isoelectric Point (pI)

26.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 10 - 54 5.1e-17 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 14 - 61 3.4e-07 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016333)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g11430
malus_domestica MD14G1134900.v1.1
prunus_persica Prupe.5G126600_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0186441
rosa_laevigata RLG00000004845
rosa_multiflora Rmu_sc0000645.1_g000043
rosa_roxburghii Rroxscaffold_2G00076400 Rroxscaffold_3G00268140
rosa_rugosa Rorug06G0474100
rosa_samantha Rh7AG067200 Rh7BG082900 Rh7CG080700 Rh7DG081300
rosa_wichuraiana Rw7G006780 Rw7G007010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 120
AfaI GTAC 1 cut(s) 193
AflIII ACRYGT 1 cut(s) 321
AgsI TTSAA 2 cut(s) 218, 437
AjnI CCWGG 1 cut(s) 16
AluBI AGCT 2 cut(s) 329, 460
AluI AGCT 2 cut(s) 329, 460
Alw26I GTCTC 1 cut(s) 102
AoxI GGCC 2 cut(s) 279, 393
ApeKI GCWGC 1 cut(s) 457
AsuC2I CCSGG 1 cut(s) 120
BbsI GAAGAC 2 cut(s) 60, 118
BbvI GCAGC 1 cut(s) 469
BccI CCATC 3 cut(s) 87, 409, 482
BciT130I CCWGG 1 cut(s) 18
BcnI CCSGG 1 cut(s) 120
BcoDI GTCTC 1 cut(s) 102
BglII AGATCT 1 cut(s) 481
BisI GCNGC 1 cut(s) 458
BlsI GCNGC 1 cut(s) 459
BmcAI AGTACT 1 cut(s) 193
Bme1390I CCNGG 2 cut(s) 18, 120
BmrFI CCNGG 2 cut(s) 18, 120
BmsI GCATC 1 cut(s) 337
BpiI GAAGAC 2 cut(s) 60, 118
BpuEI CTTGAG 2 cut(s) 212, 452
BpuMI CCSGG 1 cut(s) 120
Bsa29I ATCGAT 1 cut(s) 91
BsaBI GATNNNNATC 1 cut(s) 480
BsaI GGTCTC 1 cut(s) 102
BsaJI CCNNGG 3 cut(s) 118, 241, 396
Bse1I ACTGG 1 cut(s) 155
Bse8I GATNNNNATC 1 cut(s) 480
BseBI CCWGG 1 cut(s) 18
BseCI ATCGAT 1 cut(s) 91
BseDI CCNNGG 3 cut(s) 118, 241, 396
BseGI GGATG 1 cut(s) 241
BseJI GATNNNNATC 1 cut(s) 480
BseNI ACTGG 1 cut(s) 155
BseXI GCAGC 1 cut(s) 469
Bsh1285I CGRYCG 1 cut(s) 124
BshFI GGCC 2 cut(s) 281, 395
BshVI ATCGAT 1 cut(s) 91
BsiEI CGRYCG 1 cut(s) 124
BsiSI CCGG 1 cut(s) 120
BsmAI GTCTC 1 cut(s) 102
BsnI GGCC 2 cut(s) 281, 395
Bso31I GGTCTC 1 cut(s) 102
Bsp143I GATC 4 cut(s) 138, 364, 475, 481
BspANI GGCC 2 cut(s) 281, 395
BspDI ATCGAT 1 cut(s) 91
BspHI TCATGA 2 cut(s) 343, 370
BspTNI GGTCTC 1 cut(s) 102
BsrI ACTGG 1 cut(s) 155
BssECI CCNNGG 3 cut(s) 118, 241, 396
BssMI GATC 4 cut(s) 138, 364, 475, 481
BssT1I CCWWGG 1 cut(s) 396
Bst2UI CCWGG 1 cut(s) 18
BstF5I GGATG 1 cut(s) 241
BstKTI GATC 4 cut(s) 141, 367, 478, 484
BstMAI GTCTC 1 cut(s) 102
BstMBI GATC 4 cut(s) 138, 364, 475, 481
BstMCI CGRYCG 1 cut(s) 124
BstNI CCWGG 1 cut(s) 18
BstNSI RCATGY 1 cut(s) 325
BstSCI CCNGG 2 cut(s) 16, 118
BstV1I GCAGC 1 cut(s) 469
BstV2I GAAGAC 2 cut(s) 60, 118
BstX2I RGATCY 1 cut(s) 481
BstYI RGATCY 1 cut(s) 481
Bsu15I ATCGAT 1 cut(s) 91
BsuRI GGCC 2 cut(s) 281, 395
BsuTUI ATCGAT 1 cut(s) 91
BtsCI GGATG 1 cut(s) 241
CciI TCATGA 2 cut(s) 343, 370
ClaI ATCGAT 1 cut(s) 91
CsiI ACCWGGT 1 cut(s) 16
Csp6I GTAC 1 cut(s) 192
CviAII CATG 3 cut(s) 322, 344, 371
CviJI RGCY 7 cut(s) 70, 175, 246, 281, 329, 395, 460
CviKI_1 RGCY 7 cut(s) 70, 175, 246, 281, 329, 395, 460
CviQI GTAC 1 cut(s) 192
DpnI GATC 4 cut(s) 140, 366, 477, 483
DpnII GATC 4 cut(s) 138, 364, 475, 481
DrdI GACNNNNNNGTC 1 cut(s) 120
DseDI GACNNNNNNGTC 1 cut(s) 120
Eco130I CCWWGG 1 cut(s) 396
Eco147I AGGCCT 1 cut(s) 395
Eco31I GGTCTC 1 cut(s) 102
EcoRII CCWGG 1 cut(s) 16
EcoT14I CCWWGG 1 cut(s) 396
ErhI CCWWGG 1 cut(s) 396
FaeI CATG 3 cut(s) 325, 347, 374
FaiI YATR 8 cut(s) 23, 38, 308, 323, 345, 372, 378, 444
FatI CATG 3 cut(s) 321, 343, 370
Fnu4HI GCNGC 1 cut(s) 458
FokI GGATG 1 cut(s) 248
Fsp4HI GCNGC 1 cut(s) 458
GluI GCNGC 1 cut(s) 458
HaeIII GGCC 2 cut(s) 281, 395
HapII CCGG 1 cut(s) 120
Hin1II CATG 3 cut(s) 325, 347, 374
HincII GTYRAC 1 cut(s) 514
HindII GTYRAC 1 cut(s) 514
HinfI GANTC 3 cut(s) 114, 503, 515
HpaII CCGG 1 cut(s) 120
Hpy166II GTNNAC 1 cut(s) 514
Hpy188I TCNGA 2 cut(s) 14, 138
Hpy188III TCNNGA 7 cut(s) 44, 142, 229, 344, 371, 479, 485
Hpy8I GTNNAC 1 cut(s) 514
HpyAV CCTTC 2 cut(s) 212, 226
HpyCH4V TGCA 2 cut(s) 296, 350
Hsp92II CATG 3 cut(s) 325, 347, 374
Kzo9I GATC 4 cut(s) 138, 364, 475, 481
LpnPI CCDG 8 cut(s) 3, 30, 57, 68, 93, 133, 136, 171
Lsp1109I GCAGC 1 cut(s) 469
LweI GCATC 1 cut(s) 337
MabI ACCWGGT 1 cut(s) 16
MaeIII GTNAC 1 cut(s) 32
MalI GATC 4 cut(s) 140, 366, 477, 483
MboI GATC 4 cut(s) 138, 364, 475, 481
MboII GAAGA 4 cut(s) 65, 123, 359, 455
MflI RGATCY 1 cut(s) 481
MluCI AATT 2 cut(s) 102, 332
MlyI GAGTC 2 cut(s) 108, 509
MmeI TCCRAC 1 cut(s) 37
MnlI CCTC 7 cut(s) 23, 43, 60, 236, 346, 385, 439
MseI TTAA 2 cut(s) 261, 529
MslI CAYNNNNRTG 1 cut(s) 345
MspI CCGG 1 cut(s) 120
MspR9I CCNGG 2 cut(s) 18, 120
MvaI CCWGG 1 cut(s) 18
NciI CCSGG 1 cut(s) 120
NdeII GATC 4 cut(s) 138, 364, 475, 481
NlaIII CATG 3 cut(s) 325, 347, 374
NspI RCATGY 1 cut(s) 325
PagI TCATGA 2 cut(s) 343, 370
PceI AGGCCT 1 cut(s) 395
PciI ACATGT 1 cut(s) 321
PfeI GAWTC 1 cut(s) 503
PkrI GCNGC 1 cut(s) 459
PleI GAGTC 2 cut(s) 108, 509
PpsI GAGTC 2 cut(s) 108, 509
PscI ACATGT 1 cut(s) 321
Psp6I CCWGG 1 cut(s) 16
PspGI CCWGG 1 cut(s) 16
PsuI RGATCY 1 cut(s) 481
RsaI GTAC 1 cut(s) 193
RsaNI GTAC 1 cut(s) 192
RseI CAYNNNNRTG 1 cut(s) 345
SaqAI TTAA 2 cut(s) 261, 529
SatI GCNGC 1 cut(s) 458
Sau3AI GATC 4 cut(s) 138, 364, 475, 481
ScaI AGTACT 1 cut(s) 193
SchI GAGTC 2 cut(s) 108, 509
ScrFI CCNGG 2 cut(s) 18, 120
SetI ASST 9 cut(s) 22, 34, 60, 205, 261, 267, 331, 357, 462
SexAI ACCWGGT 1 cut(s) 16
SfaNI GCATC 1 cut(s) 337
SmiMI CAYNNNNRTG 1 cut(s) 345
SmlI CTYRAG 2 cut(s) 227, 467
SmoI CTYRAG 2 cut(s) 227, 467
Sse9I AATT 2 cut(s) 102, 332
SseBI AGGCCT 1 cut(s) 395
StuI AGGCCT 1 cut(s) 395
StyD4I CCNGG 2 cut(s) 16, 118
StyI CCWWGG 1 cut(s) 396
TaqI TCGA 5 cut(s) 91, 124, 209, 286, 486
TaqII GACCGA 1 cut(s) 255
TasI AATT 2 cut(s) 102, 332
TatI WGTACW 1 cut(s) 191
TfiI GAWTC 1 cut(s) 503
Tru1I TTAA 2 cut(s) 261, 529
Tru9I TTAA 2 cut(s) 261, 529
TseI GCWGC 1 cut(s) 457
TspDTI ATGAA 5 cut(s) 17, 62, 257, 359, 485
XceI RCATGY 1 cut(s) 325
XcmI CCANNNNNNNNNTGG 1 cut(s) 383
ZrmI AGTACT 1 cut(s) 193
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.