FvH4_5g11430
MYB Family

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0016333
Physical Location & Seq
Forward (+)
6483514 .. 6484569
1056 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g11430.t1

Sequence Viewer

Length: 672 bp
ATGGGAAGAACACCATGTTGTTCAAAGGAGGGTTTGCAGAGAGGTCCATGGACAAGAAGAGAAGACACATTGCTCATTCAATATATTCAGTCTCATGGTGAGGGCCATTGGAAATCTGTGCCAAAGAAAGCAGGACTTCTTCGATGTGGGAAGAGTTGCAGGCTGAGATGGATCAACTATCTCCGACCAGATATTAAGAGAGGTAACATAACTCCTGATGAGGAAGACCTCATAGCGAGGCTTCATTCACTTTTGGGAAATAGATGGTCTCTAATTGCAGGAAGACTCCCTGGTCGAACCGATAATGAGATCAAGAACTACTGGAATACCAAACTCAGCAAAAGGCTAAAGAACTCTGGTAGTACTACAAAAGGTGCATCAAAACCACTCAATAAGGATGATCAAGGTAGTGAAGCAAAAGTGAAGGTTCATCAACCAAAGGCCTTTAGAGTTTCTGCAAACTCAATGTTAGCTCAATTGGGTCATCATGATGCAGAGGTCTCTAATGATCTTCATGATCACAACCATTTTGGAGATGCTTTGGTTTGCGAAAATGTGAAAGGTTTTGATGATTTTGATATGTATGAAGAATTTCAGCAGCTTCTTCACAAGGCCGATCAAGATTATGATGGTCCTGATTTGGACTCTTTTGTTGACTCCTTGCTGATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

224

Amino Acids

25.35

Weight (kDa)

8.23

Isoelectric Point (pI)

37.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 14 - 61 3.6e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 17 - 75 2.1e-10 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 67 - 110 2.9e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 71 - 119 5.6e-08 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016333)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g11430
malus_domestica MD14G1134900.v1.1
prunus_persica Prupe.5G126600_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0186441
rosa_laevigata RLG00000004845
rosa_multiflora Rmu_sc0000645.1_g000043
rosa_roxburghii Rroxscaffold_2G00076400 Rroxscaffold_3G00268140
rosa_rugosa Rorug06G0474100
rosa_samantha Rh7AG067200 Rh7BG082900 Rh7CG080700 Rh7DG081300
rosa_wichuraiana Rw7G006780 Rw7G007010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 291
AclWI GGATC 1 cut(s) 179
AcsI RAATTY 1 cut(s) 590
AfaI GTAC 1 cut(s) 364
AgsI TTSAA 2 cut(s) 24, 80
AjnI CCWGG 1 cut(s) 289
AluBI AGCT 2 cut(s) 473, 601
AluI AGCT 2 cut(s) 473, 601
Alw26I GTCTC 3 cut(s) 96, 273, 505
AlwI GGATC 1 cut(s) 179
AoxI GGCC 3 cut(s) 103, 441, 612
ApeKI GCWGC 1 cut(s) 598
ApoI RAATTY 1 cut(s) 590
Asp700I GAANNNNTTC 1 cut(s) 591
AspS9I GGNCC 3 cut(s) 44, 103, 632
AsuHPI GGTGA 1 cut(s) 110
AvaII GGWCC 2 cut(s) 44, 632
BbsI GAAGAC 3 cut(s) 69, 231, 289
BbvI GCAGC 1 cut(s) 610
BccI CCATC 3 cut(s) 162, 258, 623
BciT130I CCWGG 1 cut(s) 291
BclI TGATCA 2 cut(s) 400, 517
BcoDI GTCTC 3 cut(s) 96, 273, 505
BisI GCNGC 1 cut(s) 599
BlsI GCNGC 1 cut(s) 600
BmcAI AGTACT 1 cut(s) 364
Bme1390I CCNGG 1 cut(s) 291
Bme18I GGWCC 2 cut(s) 44, 632
BmgT120I GGNCC 3 cut(s) 44, 103, 632
BmrFI CCNGG 1 cut(s) 291
BmsI GCATC 3 cut(s) 386, 481, 526
BpiI GAAGAC 3 cut(s) 69, 231, 289
BsaI GGTCTC 2 cut(s) 273, 505
BsaJI CCNNGG 2 cut(s) 47, 289
Bse1I ACTGG 1 cut(s) 326
Bse3DI GCAATG 1 cut(s) 68
BseBI CCWGG 1 cut(s) 291
BseDI CCNNGG 2 cut(s) 47, 289
BseGI GGATG 1 cut(s) 403
BseMI GCAATG 1 cut(s) 68
BseMII CTCAG 2 cut(s) 155, 349
BseNI ACTGG 1 cut(s) 326
BseXI GCAGC 1 cut(s) 610
BshFI GGCC 3 cut(s) 105, 443, 614
BsmAI GTCTC 3 cut(s) 96, 273, 505
BsnI GGCC 3 cut(s) 105, 443, 614
Bso31I GGTCTC 2 cut(s) 273, 505
Bsp143I GATC 6 cut(s) 171, 309, 400, 508, 517, 616
Bsp19I CCATGG 1 cut(s) 47
BspANI GGCC 3 cut(s) 105, 443, 614
BspCNI CTCAG 2 cut(s) 156, 348
BspHI TCATGA 2 cut(s) 487, 514
BspPI GGATC 1 cut(s) 179
BspTNI GGTCTC 2 cut(s) 273, 505
BsrDI GCAATG 1 cut(s) 68
BsrI ACTGG 1 cut(s) 326
BssECI CCNNGG 2 cut(s) 47, 289
BssMI GATC 6 cut(s) 171, 309, 400, 508, 517, 616
BssT1I CCWWGG 1 cut(s) 47
Bst2UI CCWGG 1 cut(s) 291
Bst6I CTCTTC 2 cut(s) 52, 146
BstC8I GCNNGC 1 cut(s) 161
BstDEI CTNAG 2 cut(s) 164, 335
BstDSI CCRYGG 1 cut(s) 47
BstF5I GGATG 1 cut(s) 403
BstKTI GATC 6 cut(s) 174, 312, 403, 511, 520, 619
BstMAI GTCTC 3 cut(s) 96, 273, 505
BstMBI GATC 6 cut(s) 171, 309, 400, 508, 517, 616
BstNI CCWGG 1 cut(s) 291
BstSCI CCNGG 1 cut(s) 289
BstV1I GCAGC 1 cut(s) 610
BstV2I GAAGAC 3 cut(s) 69, 231, 289
BsuRI GGCC 3 cut(s) 105, 443, 614
BtgI CCRYGG 1 cut(s) 47
BtsCI GGATG 1 cut(s) 403
Cac8I GCNNGC 1 cut(s) 161
CciI TCATGA 2 cut(s) 487, 514
Cfr13I GGNCC 3 cut(s) 44, 103, 632
Csp6I GTAC 1 cut(s) 363
CviAII CATG 5 cut(s) 15, 48, 95, 488, 515
CviJI RGCY 8 cut(s) 105, 163, 241, 346, 443, 473, 601, 614
CviKI_1 RGCY 8 cut(s) 105, 163, 241, 346, 443, 473, 601, 614
CviQI GTAC 1 cut(s) 363
DdeI CTNAG 2 cut(s) 164, 335
DpnI GATC 6 cut(s) 173, 311, 402, 510, 519, 618
DpnII GATC 6 cut(s) 171, 309, 400, 508, 517, 616
DrdI GACNNNNNNGTC 1 cut(s) 291
DseDI GACNNNNNNGTC 1 cut(s) 291
Eam1104I CTCTTC 2 cut(s) 52, 146
EarI CTCTTC 2 cut(s) 52, 146
Eco130I CCWWGG 1 cut(s) 47
Eco147I AGGCCT 1 cut(s) 443
Eco31I GGTCTC 2 cut(s) 273, 505
Eco47I GGWCC 2 cut(s) 44, 632
EcoRII CCWGG 1 cut(s) 289
EcoT14I CCWWGG 1 cut(s) 47
ErhI CCWWGG 1 cut(s) 47
FaeI CATG 5 cut(s) 18, 51, 98, 491, 518
FalI AAGNNNNNCTT 2 cut(s) 120, 152
FatI CATG 5 cut(s) 14, 47, 94, 487, 514
FbaI TGATCA 2 cut(s) 400, 517
Fnu4HI GCNGC 1 cut(s) 599
FokI GGATG 1 cut(s) 410
Fsp4HI GCNGC 1 cut(s) 599
GluI GCNGC 1 cut(s) 599
HaeIII GGCC 3 cut(s) 105, 443, 614
Hin1II CATG 5 cut(s) 18, 51, 98, 491, 518
HincII GTYRAC 1 cut(s) 655
HindII GTYRAC 1 cut(s) 655
HinfI GANTC 3 cut(s) 285, 644, 656
HphI GGTGA 1 cut(s) 110
Hpy166II GTNNAC 1 cut(s) 655
Hpy188I TCNGA 1 cut(s) 185
Hpy188III TCNNGA 6 cut(s) 215, 313, 488, 515, 620, 635
Hpy8I GTNNAC 1 cut(s) 655
HpyAV CCTTC 1 cut(s) 418
HpyCH4V TGCA 6 cut(s) 37, 159, 278, 377, 458, 494
HpyF3I CTNAG 2 cut(s) 164, 335
Hsp92II CATG 5 cut(s) 18, 51, 98, 491, 518
Ksp22I TGATCA 2 cut(s) 400, 517
Kzo9I GATC 6 cut(s) 171, 309, 400, 508, 517, 616
Lsp1109I GCAGC 1 cut(s) 610
LweI GCATC 3 cut(s) 386, 481, 526
MaeIII GTNAC 1 cut(s) 203
MalI GATC 6 cut(s) 173, 311, 402, 510, 519, 618
MboI GATC 6 cut(s) 171, 309, 400, 508, 517, 616
MfeI CAATTG 1 cut(s) 476
MluCI AATT 3 cut(s) 273, 476, 590
MlyI GAGTC 3 cut(s) 279, 638, 650
MmeI TCCRAC 1 cut(s) 208
MnlI CCTC 8 cut(s) 22, 35, 94, 194, 214, 231, 239, 490
MroXI GAANNNNTTC 1 cut(s) 591
MseI TTAA 1 cut(s) 195
MslI CAYNNNNRTG 1 cut(s) 489
MspR9I CCNGG 1 cut(s) 291
MunI CAATTG 1 cut(s) 476
MvaI CCWGG 1 cut(s) 291
NcoI CCATGG 1 cut(s) 47
NdeII GATC 6 cut(s) 171, 309, 400, 508, 517, 616
NlaIII CATG 5 cut(s) 18, 51, 98, 491, 518
PagI TCATGA 2 cut(s) 487, 514
PceI AGGCCT 1 cut(s) 443
PdmI GAANNNNTTC 1 cut(s) 591
PkrI GCNGC 1 cut(s) 600
PleI GAGTC 3 cut(s) 279, 638, 650
PpsI GAGTC 3 cut(s) 279, 638, 650
Psp6I CCWGG 1 cut(s) 289
PspGI CCWGG 1 cut(s) 289
PspPI GGNCC 3 cut(s) 44, 103, 632
RsaI GTAC 1 cut(s) 364
RsaNI GTAC 1 cut(s) 363
RseI CAYNNNNRTG 1 cut(s) 489
SaqAI TTAA 1 cut(s) 195
SatI GCNGC 1 cut(s) 599
Sau3AI GATC 6 cut(s) 171, 309, 400, 508, 517, 616
Sau96I GGNCC 3 cut(s) 44, 103, 632
ScaI AGTACT 1 cut(s) 364
SchI GAGTC 3 cut(s) 279, 638, 650
ScrFI CCNGG 1 cut(s) 291
SfaNI GCATC 3 cut(s) 386, 481, 526
SinI GGWCC 2 cut(s) 44, 632
SmiMI CAYNNNNRTG 1 cut(s) 489
Sse9I AATT 3 cut(s) 273, 476, 590
SseBI AGGCCT 1 cut(s) 443
StuI AGGCCT 1 cut(s) 443
StyD4I CCNGG 1 cut(s) 289
StyI CCWWGG 1 cut(s) 47
TaqI TCGA 2 cut(s) 142, 295
TasI AATT 3 cut(s) 273, 476, 590
TatI WGTACW 1 cut(s) 362
Tru1I TTAA 1 cut(s) 195
Tru9I TTAA 1 cut(s) 195
TseI GCWGC 1 cut(s) 598
TspDTI ATGAA 4 cut(s) 233, 419, 503, 600
VpaK11BI GGWCC 2 cut(s) 44, 632
XapI RAATTY 1 cut(s) 590
XmnI GAANNNNTTC 1 cut(s) 591
ZrmI AGTACT 1 cut(s) 364
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.