Rroxscaffold_3G00268140
MYB Family

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0016333
Physical Location & Seq
Forward (+)
61293414 .. 61294401
988 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00268140.1

Sequence Viewer

Length: 699 bp
ATGGGAAGAACACCATGTTGTTCAAAGGAGGGTTTGCAGAGAGGTCCATGGACTACCATAGAAGACACATTGCTCATTCAATACATCCAGTCTCATGGTGAAGGCCATTGGATGTCTCTGCCAAAGAAAGCAGGGCTTCTTCGATGTGGGAAAAGTTGCAGGCTGAGATGGATGAACTATCTCCGACCAGGTATAAAGAGAGGTAACATAACTCCTGATGAGGAAGACCTTATTGTGAGGCTTCATTCACTTCTGGGAAATCGATGGTCTCTAATTGCTGGAAGACTCCCCGGTCGAACTGATAATGAGATCAAGAACTACTGGAATACCAACCTCAGCAAAAGGCTCAACAACGCTGGTAGTACTAAAAAAGGTATATCAAGTGTTGAAGGACAACTCAAGAAGGATGACCGAGGCTGTGTAGCAAAGGTTAAGGTTCATCAACCAAAGGCTATTCGAGTTTCTGCAAACTCAATCAGGAACAACAACATCTTAGCTGAATTGGGTCATCATGATGCTGAGGTTTCTAATGATCTTCATGATCATAACCATTTTGGAGAGGCCTTGGTTTGCGAAAATGTGATGAATTTGGATGTTTTTATTCAAGGGTATGAGGAATATCAGCAGCTACTTCTCAAGGCAGATCAAGATCTCGATGGTGTTCATTTGGACTCTTTTGTTGACTCCTTGTTGATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

232

Amino Acids

26.19

Weight (kDa)

8.2

Isoelectric Point (pI)

36.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 14 - 61 6.3e-14 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 17 - 75 3e-06 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 67 - 112 4.1e-17 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 71 - 119 2.7e-07 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016333)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g11430
malus_domestica MD14G1134900.v1.1
prunus_persica Prupe.5G126600_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0186441
rosa_laevigata RLG00000004845
rosa_multiflora Rmu_sc0000645.1_g000043
rosa_roxburghii Rroxscaffold_2G00076400 Rroxscaffold_3G00268140
rosa_rugosa Rorug06G0474100
rosa_samantha Rh7AG067200 Rh7BG082900 Rh7CG080700 Rh7DG081300
rosa_wichuraiana Rw7G006780 Rw7G007010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 291
AcsI RAATTY 1 cut(s) 586
AfaI GTAC 1 cut(s) 364
AgsI TTSAA 4 cut(s) 24, 80, 389, 605
AjnI CCWGG 1 cut(s) 187
AluBI AGCT 2 cut(s) 497, 628
AluI AGCT 2 cut(s) 497, 628
Alw26I GTCTC 3 cut(s) 96, 120, 273
AoxI GGCC 2 cut(s) 103, 561
ApeKI GCWGC 1 cut(s) 625
ApoI RAATTY 1 cut(s) 586
AspS9I GGNCC 1 cut(s) 44
AsuC2I CCSGG 1 cut(s) 291
AsuHPI GGTGA 1 cut(s) 110
AvaII GGWCC 1 cut(s) 44
BbsI GAAGAC 3 cut(s) 69, 231, 289
BbvCI CCTCAGC 2 cut(s) 335, 519
BbvI GCAGC 1 cut(s) 637
BccI CCATC 3 cut(s) 162, 258, 650
BciT130I CCWGG 1 cut(s) 189
BclI TGATCA 1 cut(s) 541
BcnI CCSGG 1 cut(s) 291
BcoDI GTCTC 3 cut(s) 96, 120, 273
BglII AGATCT 1 cut(s) 649
BisI GCNGC 1 cut(s) 626
BlsI GCNGC 1 cut(s) 627
BmcAI AGTACT 1 cut(s) 364
Bme1390I CCNGG 2 cut(s) 189, 291
Bme18I GGWCC 1 cut(s) 44
BmgT120I GGNCC 1 cut(s) 44
BmrFI CCNGG 2 cut(s) 189, 291
BmsI GCATC 1 cut(s) 505
BpiI GAAGAC 3 cut(s) 69, 231, 289
Bpu10I CCTNAGC 2 cut(s) 335, 519
BpuEI CTTGAG 2 cut(s) 383, 620
BpuMI CCSGG 1 cut(s) 291
Bsa29I ATCGAT 1 cut(s) 262
BsaBI GATNNNNATC 1 cut(s) 648
BsaI GGTCTC 1 cut(s) 273
BsaJI CCNNGG 4 cut(s) 47, 289, 412, 564
Bse1I ACTGG 2 cut(s) 88, 326
Bse3DI GCAATG 1 cut(s) 68
Bse8I GATNNNNATC 1 cut(s) 648
BseBI CCWGG 1 cut(s) 189
BseCI ATCGAT 1 cut(s) 262
BseDI CCNNGG 4 cut(s) 47, 289, 412, 564
BseGI GGATG 5 cut(s) 84, 117, 177, 412, 598
BseJI GATNNNNATC 1 cut(s) 648
BseMI GCAATG 1 cut(s) 68
BseMII CTCAG 3 cut(s) 155, 349, 510
BseNI ACTGG 2 cut(s) 88, 326
BseXI GCAGC 1 cut(s) 637
Bsh1285I CGRYCG 1 cut(s) 295
BshFI GGCC 2 cut(s) 105, 563
BshVI ATCGAT 1 cut(s) 262
BsiEI CGRYCG 1 cut(s) 295
BsiSI CCGG 1 cut(s) 291
BsmAI GTCTC 3 cut(s) 96, 120, 273
BsnI GGCC 2 cut(s) 105, 563
Bso31I GGTCTC 1 cut(s) 273
Bsp143I GATC 5 cut(s) 309, 532, 541, 643, 649
Bsp19I CCATGG 1 cut(s) 47
BspANI GGCC 2 cut(s) 105, 563
BspCNI CTCAG 3 cut(s) 156, 348, 511
BspDI ATCGAT 1 cut(s) 262
BspHI TCATGA 2 cut(s) 511, 538
BspTNI GGTCTC 1 cut(s) 273
BsrDI GCAATG 1 cut(s) 68
BsrI ACTGG 2 cut(s) 88, 326
BssECI CCNNGG 4 cut(s) 47, 289, 412, 564
BssMI GATC 5 cut(s) 309, 532, 541, 643, 649
BssT1I CCWWGG 2 cut(s) 47, 564
Bst2UI CCWGG 1 cut(s) 189
BstC8I GCNNGC 1 cut(s) 161
BstDEI CTNAG 4 cut(s) 164, 335, 493, 519
BstDSI CCRYGG 1 cut(s) 47
BstF5I GGATG 5 cut(s) 84, 117, 177, 412, 598
BstKTI GATC 5 cut(s) 312, 535, 544, 646, 652
BstMAI GTCTC 3 cut(s) 96, 120, 273
BstMBI GATC 5 cut(s) 309, 532, 541, 643, 649
BstMCI CGRYCG 1 cut(s) 295
BstNI CCWGG 1 cut(s) 189
BstSCI CCNGG 2 cut(s) 187, 289
BstV1I GCAGC 1 cut(s) 637
BstV2I GAAGAC 3 cut(s) 69, 231, 289
BstX2I RGATCY 1 cut(s) 649
BstXI CCANNNNNNTGG 1 cut(s) 95
BstYI RGATCY 1 cut(s) 649
Bsu15I ATCGAT 1 cut(s) 262
BsuRI GGCC 2 cut(s) 105, 563
BsuTUI ATCGAT 1 cut(s) 262
BtgI CCRYGG 1 cut(s) 47
BtsCI GGATG 5 cut(s) 84, 117, 177, 412, 598
Cac8I GCNNGC 1 cut(s) 161
CciI TCATGA 2 cut(s) 511, 538
Cfr13I GGNCC 1 cut(s) 44
ClaI ATCGAT 1 cut(s) 262
CsiI ACCWGGT 1 cut(s) 187
Csp6I GTAC 1 cut(s) 363
CviAII CATG 5 cut(s) 15, 48, 95, 512, 539
CviQI GTAC 1 cut(s) 363
DdeI CTNAG 4 cut(s) 164, 335, 493, 519
DpnI GATC 5 cut(s) 311, 534, 543, 645, 651
DpnII GATC 5 cut(s) 309, 532, 541, 643, 649
DrdI GACNNNNNNGTC 1 cut(s) 291
DseDI GACNNNNNNGTC 1 cut(s) 291
Eco130I CCWWGG 2 cut(s) 47, 564
Eco147I AGGCCT 1 cut(s) 563
Eco31I GGTCTC 1 cut(s) 273
Eco47I GGWCC 1 cut(s) 44
EcoRII CCWGG 1 cut(s) 187
EcoT14I CCWWGG 2 cut(s) 47, 564
ErhI CCWWGG 2 cut(s) 47, 564
FaeI CATG 5 cut(s) 18, 51, 98, 515, 542
FalI AAGNNNNNCTT 2 cut(s) 120, 152
FatI CATG 5 cut(s) 14, 47, 94, 511, 538
FbaI TGATCA 1 cut(s) 541
Fnu4HI GCNGC 1 cut(s) 626
FokI GGATG 5 cut(s) 71, 124, 184, 419, 605
Fsp4HI GCNGC 1 cut(s) 626
GluI GCNGC 1 cut(s) 626
HaeIII GGCC 2 cut(s) 105, 563
HapII CCGG 1 cut(s) 291
Hin1II CATG 5 cut(s) 18, 51, 98, 515, 542
HincII GTYRAC 1 cut(s) 682
HindII GTYRAC 1 cut(s) 682
HinfI GANTC 3 cut(s) 285, 671, 683
HpaII CCGG 1 cut(s) 291
HphI GGTGA 1 cut(s) 110
Hpy166II GTNNAC 1 cut(s) 682
Hpy188I TCNGA 1 cut(s) 185
Hpy188III TCNNGA 8 cut(s) 215, 313, 400, 478, 512, 539, 647, 653
Hpy8I GTNNAC 1 cut(s) 682
HpyAV CCTTC 3 cut(s) 95, 383, 397
HpyCH4V TGCA 3 cut(s) 37, 159, 467
HpyF3I CTNAG 4 cut(s) 164, 335, 493, 519
Hsp92II CATG 5 cut(s) 18, 51, 98, 515, 542
Ksp22I TGATCA 1 cut(s) 541
Kzo9I GATC 5 cut(s) 309, 532, 541, 643, 649
Lsp1109I GCAGC 1 cut(s) 637
LweI GCATC 1 cut(s) 505
MabI ACCWGGT 1 cut(s) 187
MaeIII GTNAC 1 cut(s) 203
MalI GATC 5 cut(s) 311, 534, 543, 645, 651
MboI GATC 5 cut(s) 309, 532, 541, 643, 649
MboII GAAGA 6 cut(s) 18, 74, 131, 236, 294, 527
MflI RGATCY 1 cut(s) 649
MluCI AATT 3 cut(s) 273, 500, 586
MlyI GAGTC 3 cut(s) 279, 665, 677
MmeI TCCRAC 1 cut(s) 208
MseI TTAA 2 cut(s) 432, 697
MslI CAYNNNNRTG 1 cut(s) 513
MspI CCGG 1 cut(s) 291
MspR9I CCNGG 2 cut(s) 189, 291
MvaI CCWGG 1 cut(s) 189
NciI CCSGG 1 cut(s) 291
NcoI CCATGG 1 cut(s) 47
NdeII GATC 5 cut(s) 309, 532, 541, 643, 649
NlaIII CATG 5 cut(s) 18, 51, 98, 515, 542
PagI TCATGA 2 cut(s) 511, 538
PceI AGGCCT 1 cut(s) 563
PkrI GCNGC 1 cut(s) 627
PleI GAGTC 3 cut(s) 279, 665, 677
PpsI GAGTC 3 cut(s) 279, 665, 677
Psp6I CCWGG 1 cut(s) 187
PspGI CCWGG 1 cut(s) 187
PspPI GGNCC 1 cut(s) 44
PsuI RGATCY 1 cut(s) 649
RsaI GTAC 1 cut(s) 364
RsaNI GTAC 1 cut(s) 363
RseI CAYNNNNRTG 1 cut(s) 513
SaqAI TTAA 2 cut(s) 432, 697
SatI GCNGC 1 cut(s) 626
Sau3AI GATC 5 cut(s) 309, 532, 541, 643, 649
Sau96I GGNCC 1 cut(s) 44
ScaI AGTACT 1 cut(s) 364
SchI GAGTC 3 cut(s) 279, 665, 677
ScrFI CCNGG 2 cut(s) 189, 291
SexAI ACCWGGT 1 cut(s) 187
SfaNI GCATC 1 cut(s) 505
SinI GGWCC 1 cut(s) 44
SmiMI CAYNNNNRTG 1 cut(s) 513
SmlI CTYRAG 2 cut(s) 398, 635
SmoI CTYRAG 2 cut(s) 398, 635
Sse9I AATT 3 cut(s) 273, 500, 586
SseBI AGGCCT 1 cut(s) 563
StuI AGGCCT 1 cut(s) 563
StyD4I CCNGG 2 cut(s) 187, 289
StyI CCWWGG 2 cut(s) 47, 564
TaqI TCGA 5 cut(s) 142, 262, 295, 457, 654
TaqII GACCGA 1 cut(s) 426
TasI AATT 3 cut(s) 273, 500, 586
TatI WGTACW 1 cut(s) 362
Tru1I TTAA 2 cut(s) 432, 697
Tru9I TTAA 2 cut(s) 432, 697
TseI GCWGC 1 cut(s) 625
TspDTI ATGAA 6 cut(s) 188, 233, 428, 527, 599, 653
VpaK11BI GGWCC 1 cut(s) 44
XapI RAATTY 1 cut(s) 586
ZrmI AGTACT 1 cut(s) 364
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.