Prupe.5G126600_v2.0.a1
MYB Family

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0016333
Physical Location & Seq
Reverse (-)
12387311 .. 12388691
1381 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G126600.1

Sequence Viewer

Length: 858 bp
ATGGGCAGAGCACCCTGTTGTTCAAAGGTGGGTCTGCATAGAGGTTCATGGACTGCCAGAGAAGACGCATTGCTCATTCAGTACATCCAGTCCCATGGTGAAGGCCATTGGAGTTCTTTGCCTAATAAAGCTGGGCTTCTTCGTTGTGGGAAGAGCTGCAGGCTAAGGTGGATGAACTATCTGCGGCCTGATATAAAGCGAGGCAACATAACTCCCGAGGAAGATGACCTAATTGTGAGGCTTCATGCCCTTCTCGGCAACCGCTGGTCTCTCATTGCTGGAAGGCTTCCTGGTCGGACTGACAATGAGATCAAGAATTACTGGAACACCCACATCGCCAAAAGACTCAGAATCCAAAAAACCAGCACTCAAGAAGTTGCACCAAAACCAAAATCAAAATGTGTCCAAGCTGAGGAGGCCAAGAAAAGTGATGATGACCATGAAAATATTGGTGCAACAACAAAAAGGACCAAACTTCATCTCCCAAAGCCTACCAGGGTGTCTCCAGTTAAAACCCCAGTTGGGTCTTTTTGTGATGGAGAGGGAGATCATGAACAAGAAGTTGGGTTTTATGATGCAGAAGTTCCTAATTATTTTCATGCGTCTTGGTCTGATGATATGAAGAAGGAAGACGATGATTGTTTTGGGGAGGGCTTGGTTTGTGGTGAGAATGTTGAAGATTGTTATGACTTTGTTCAAGTGTTTGACCCTGCCAGGAGTCAGAATTCTGAAGAAGCTGCTGCAGCTGCAGAAAGAGTTGCTATGACATGGAAAATCTGTGAGGAATATGAGCAGGATCTCAAGGCAGATCAAGATCATGGTCAATTGGAGTCTTTTGTTGATTCCTTGCTGATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

286

Amino Acids

32.22

Weight (kDa)

5.62

Isoelectric Point (pI)

47.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016333)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g11430
malus_domestica MD14G1134900.v1.1
prunus_persica Prupe.5G126600_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0186441
rosa_laevigata RLG00000004845
rosa_multiflora Rmu_sc0000645.1_g000043
rosa_roxburghii Rroxscaffold_2G00076400 Rroxscaffold_3G00268140
rosa_rugosa Rorug06G0474100
rosa_samantha Rh7AG067200 Rh7BG082900 Rh7CG080700 Rh7DG081300
rosa_wichuraiana Rw7G006780 Rw7G007010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 184, 262
AclWI GGATC 1 cut(s) 804
AcsI RAATTY 1 cut(s) 724
AcuI CTGAAG 1 cut(s) 750
AfaI GTAC 1 cut(s) 83
AfiI CCNNNNNNNGG 2 cut(s) 412, 522
AgsI TTSAA 3 cut(s) 24, 677, 698
AjnI CCWGG 3 cut(s) 289, 494, 713
AjuI GAANNNNNNNTTGG 2 cut(s) 546, 578
AluBI AGCT 5 cut(s) 131, 156, 410, 737, 746
AluI AGCT 5 cut(s) 131, 156, 410, 737, 746
Alw21I GWGCWC 1 cut(s) 13
Alw26I GTCTC 2 cut(s) 273, 507
AlwI GGATC 1 cut(s) 804
Ama87I CYCGRG 1 cut(s) 215
AoxI GGCC 3 cut(s) 103, 185, 417
ApeKI GCWGC 5 cut(s) 156, 737, 740, 743, 746
ApoI RAATTY 1 cut(s) 724
AspS9I GGNCC 1 cut(s) 468
AsuHPI GGTGA 2 cut(s) 110, 677
AvaI CYCGRG 1 cut(s) 215
AvaII GGWCC 1 cut(s) 468
BbsI GAAGAC 2 cut(s) 69, 636
Bbv12I GWGCWC 1 cut(s) 13
BbvCI CCTCAGC 1 cut(s) 411
BbvI GCAGC 5 cut(s) 143, 724, 727, 733, 755
BccI CCATC 1 cut(s) 530
BciT130I CCWGG 3 cut(s) 291, 496, 715
BcoDI GTCTC 2 cut(s) 273, 507
BfmI CTRYAG 3 cut(s) 157, 741, 747
BisI GCNGC 6 cut(s) 157, 185, 738, 741, 744, 747
BlsI GCNGC 6 cut(s) 158, 186, 739, 742, 745, 748
Bme1390I CCNGG 3 cut(s) 291, 496, 715
Bme18I GGWCC 1 cut(s) 468
BmeT110I CYCGRG 1 cut(s) 215
BmgT120I GGNCC 1 cut(s) 468
BmrFI CCNGG 3 cut(s) 291, 496, 715
BmrI ACTGGG 1 cut(s) 512
BmsI GCATC 1 cut(s) 565
BmuI ACTGGG 1 cut(s) 512
BpiI GAAGAC 2 cut(s) 69, 636
BpmI CTGGAG 1 cut(s) 489
Bpu10I CCTNAGC 2 cut(s) 164, 411
BpuEI CTTGAG 2 cut(s) 354, 785
BsaBI GATNNNNATC 1 cut(s) 813
BsaI GGTCTC 1 cut(s) 273
BsaJI CCNNGG 3 cut(s) 94, 216, 495
BsaXI ACNNNNNCTCC 2 cut(s) 465, 495
Bsc4I CCNNNNNNNGG 2 cut(s) 412, 522
Bse1I ACTGG 4 cut(s) 88, 326, 506, 518
Bse3DI GCAATG 2 cut(s) 68, 273
Bse8I GATNNNNATC 1 cut(s) 813
BseBI CCWGG 3 cut(s) 291, 496, 715
BseDI CCNNGG 3 cut(s) 94, 216, 495
BseGI GGATG 2 cut(s) 84, 177
BseJI GATNNNNATC 1 cut(s) 813
BseLI CCNNNNNNNGG 2 cut(s) 412, 522
BseMI GCAATG 2 cut(s) 68, 273
BseMII CTCAG 2 cut(s) 361, 402
BseNI ACTGG 4 cut(s) 88, 326, 506, 518
BseRI GAGGAG 1 cut(s) 428
BseXI GCAGC 5 cut(s) 143, 724, 727, 733, 755
BseYI CCCAGC 1 cut(s) 131
BshFI GGCC 3 cut(s) 105, 187, 419
BsiHKAI GWGCWC 1 cut(s) 13
BsiHKCI CYCGRG 1 cut(s) 215
BslFI GGGAC 1 cut(s) 76
BslI CCNNNNNNNGG 2 cut(s) 412, 522
BsmAI GTCTC 2 cut(s) 273, 507
BsmFI GGGAC 1 cut(s) 76
BsnI GGCC 3 cut(s) 105, 187, 419
Bso31I GGTCTC 1 cut(s) 273
BsoBI CYCGRG 1 cut(s) 215
Bsp1286I GDGCHC 1 cut(s) 13
Bsp143I GATC 5 cut(s) 309, 547, 796, 808, 814
Bsp19I CCATGG 1 cut(s) 94
BspACI CCGC 2 cut(s) 184, 262
BspANI GGCC 3 cut(s) 105, 187, 419
BspCNI CTCAG 2 cut(s) 360, 403
BspHI TCATGA 1 cut(s) 550
BspMAI CTGCAG 3 cut(s) 161, 745, 751
BspPI GGATC 1 cut(s) 804
BspQI GCTCTTC 1 cut(s) 146
BspTNI GGTCTC 1 cut(s) 273
BsrDI GCAATG 2 cut(s) 68, 273
BsrI ACTGG 4 cut(s) 88, 326, 506, 518
BssECI CCNNGG 3 cut(s) 94, 216, 495
BssMI GATC 5 cut(s) 309, 547, 796, 808, 814
BssT1I CCWWGG 1 cut(s) 94
Bst2UI CCWGG 3 cut(s) 291, 496, 715
Bst6I CTCTTC 1 cut(s) 146
BstC8I GCNNGC 1 cut(s) 161
BstDEI CTNAG 3 cut(s) 164, 347, 411
BstDSI CCRYGG 1 cut(s) 94
BstF5I GGATG 2 cut(s) 84, 177
BstKTI GATC 5 cut(s) 312, 550, 799, 811, 817
BstMAI GTCTC 2 cut(s) 273, 507
BstMBI GATC 5 cut(s) 309, 547, 796, 808, 814
BstMWI GCNNNNNNNGC 3 cut(s) 416, 743, 746
BstNI CCWGG 3 cut(s) 291, 496, 715
BstSCI CCNGG 3 cut(s) 289, 494, 713
BstSFI CTRYAG 3 cut(s) 157, 741, 747
BstV1I GCAGC 5 cut(s) 143, 724, 727, 733, 755
BstV2I GAAGAC 2 cut(s) 69, 636
BstX2I RGATCY 1 cut(s) 796
BstXI CCANNNNNNTGG 1 cut(s) 95
BstYI RGATCY 1 cut(s) 796
BsuRI GGCC 3 cut(s) 105, 187, 419
BtgI CCRYGG 1 cut(s) 94
BtgZI GCGATG 1 cut(s) 319
BtsCI GGATG 2 cut(s) 84, 177
Cac8I GCNNGC 1 cut(s) 161
CciI TCATGA 1 cut(s) 550
Cfr13I GGNCC 1 cut(s) 468
CseI GACGC 2 cut(s) 74, 591
Csp6I GTAC 1 cut(s) 82
CviAII CATG 8 cut(s) 48, 95, 245, 440, 551, 599, 768, 818
CviQI GTAC 1 cut(s) 82
DdeI CTNAG 3 cut(s) 164, 347, 411
DpnI GATC 5 cut(s) 311, 549, 798, 810, 816
DpnII GATC 5 cut(s) 309, 547, 796, 808, 814
Eam1104I CTCTTC 1 cut(s) 146
EarI CTCTTC 1 cut(s) 146
Eco130I CCWWGG 1 cut(s) 94
Eco31I GGTCTC 1 cut(s) 273
Eco47I GGWCC 1 cut(s) 468
Eco57I CTGAAG 1 cut(s) 750
Eco88I CYCGRG 1 cut(s) 215
EcoRI GAATTC 1 cut(s) 724
EcoRII CCWGG 3 cut(s) 289, 494, 713
EcoT14I CCWWGG 1 cut(s) 94
ErhI CCWWGG 1 cut(s) 94
FaeI CATG 8 cut(s) 51, 98, 248, 443, 554, 602, 771, 821
FalI AAGNNNNNCTT 2 cut(s) 120, 152
FaqI GGGAC 1 cut(s) 76
FatI CATG 8 cut(s) 47, 94, 244, 439, 550, 598, 767, 817
Fnu4HI GCNGC 6 cut(s) 157, 185, 738, 741, 744, 747
FokI GGATG 2 cut(s) 71, 184
Fsp4HI GCNGC 6 cut(s) 157, 185, 738, 741, 744, 747
GluI GCNGC 6 cut(s) 157, 185, 738, 741, 744, 747
GsaI CCCAGC 1 cut(s) 135
GsuI CTGGAG 1 cut(s) 489
HaeIII GGCC 3 cut(s) 105, 187, 419
HgaI GACGC 2 cut(s) 74, 591
Hin1II CATG 8 cut(s) 51, 98, 248, 443, 554, 602, 771, 821
HinfI GANTC 5 cut(s) 345, 351, 718, 830, 842
HphI GGTGA 2 cut(s) 110, 677
Hpy188I TCNGA 5 cut(s) 297, 350, 613, 723, 730
Hpy188III TCNNGA 5 cut(s) 215, 313, 371, 551, 812
HpyAV CCTTC 4 cut(s) 95, 260, 276, 619
HpyCH4V TGCA 7 cut(s) 37, 159, 380, 455, 578, 743, 749
HpyF10VI GCNNNNNNNGC 3 cut(s) 416, 743, 746
HpyF3I CTNAG 3 cut(s) 164, 347, 411
Hsp92II CATG 8 cut(s) 51, 98, 248, 443, 554, 602, 771, 821
Kzo9I GATC 5 cut(s) 309, 547, 796, 808, 814
LguI GCTCTTC 1 cut(s) 146
Lsp1109I GCAGC 5 cut(s) 143, 724, 727, 733, 755
LweI GCATC 1 cut(s) 565
MalI GATC 5 cut(s) 311, 549, 798, 810, 816
MboI GATC 5 cut(s) 309, 547, 796, 808, 814
MboII GAAGA 8 cut(s) 74, 131, 163, 233, 634, 641, 689, 743
MfeI CAATTG 1 cut(s) 824
MflI RGATCY 1 cut(s) 796
MhlI GDGCHC 1 cut(s) 13
MluCI AATT 5 cut(s) 231, 316, 589, 724, 824
MlyI GAGTC 3 cut(s) 339, 727, 839
MmeI TCCRAC 1 cut(s) 275
MnlI CCTC 9 cut(s) 35, 194, 211, 231, 406, 409, 535, 643, 775
MseI TTAA 1 cut(s) 510
MspA1I CMGCKG 2 cut(s) 264, 746
MspR9I CCNGG 3 cut(s) 291, 496, 715
MunI CAATTG 1 cut(s) 824
MvaI CCWGG 3 cut(s) 291, 496, 715
MwoI GCNNNNNNNGC 3 cut(s) 416, 743, 746
NcoI CCATGG 1 cut(s) 94
NdeII GATC 5 cut(s) 309, 547, 796, 808, 814
NlaIII CATG 8 cut(s) 51, 98, 248, 443, 554, 602, 771, 821
NmeAIII GCCGAG 1 cut(s) 234
PagI TCATGA 1 cut(s) 550
PciSI GCTCTTC 1 cut(s) 146
PfeI GAWTC 2 cut(s) 351, 842
PkrI GCNGC 6 cut(s) 158, 186, 739, 742, 745, 748
PleI GAGTC 3 cut(s) 339, 726, 838
PpsI GAGTC 3 cut(s) 339, 726, 838
Psp6I CCWGG 3 cut(s) 289, 494, 713
PspFI CCCAGC 1 cut(s) 131
PspGI CCWGG 3 cut(s) 289, 494, 713
PspPI GGNCC 1 cut(s) 468
PstI CTGCAG 3 cut(s) 161, 745, 751
PsuI RGATCY 1 cut(s) 796
PvuII CAGCTG 1 cut(s) 746
RsaI GTAC 1 cut(s) 83
RsaNI GTAC 1 cut(s) 82
SapI GCTCTTC 1 cut(s) 146
SaqAI TTAA 1 cut(s) 510
SatI GCNGC 6 cut(s) 157, 185, 738, 741, 744, 747
Sau3AI GATC 5 cut(s) 309, 547, 796, 808, 814
Sau96I GGNCC 1 cut(s) 468
SchI GAGTC 3 cut(s) 339, 727, 839
ScrFI CCNGG 3 cut(s) 291, 496, 715
SduI GDGCHC 1 cut(s) 13
SetI ASST 9 cut(s) 30, 46, 133, 158, 170, 231, 412, 739, 748
SfaNI GCATC 1 cut(s) 565
SfcI CTRYAG 3 cut(s) 157, 741, 747
SinI GGWCC 1 cut(s) 468
SmlI CTYRAG 2 cut(s) 369, 800
SmoI CTYRAG 2 cut(s) 369, 800
Sse9I AATT 5 cut(s) 231, 316, 589, 724, 824
SsiI CCGC 2 cut(s) 184, 262
SspI AATATT 1 cut(s) 448
StyD4I CCNGG 3 cut(s) 289, 494, 713
StyI CCWWGG 1 cut(s) 94
TasI AATT 5 cut(s) 231, 316, 589, 724, 824
TatI WGTACW 1 cut(s) 81
TauI GCSGC 1 cut(s) 187
TfiI GAWTC 2 cut(s) 351, 842
Tru1I TTAA 1 cut(s) 510
Tru9I TTAA 1 cut(s) 510
TseI GCWGC 5 cut(s) 156, 737, 740, 743, 746
TspDTI ATGAA 8 cut(s) 36, 188, 233, 456, 467, 567, 587, 635
VpaK11BI GGWCC 1 cut(s) 468
XapI RAATTY 1 cut(s) 724
XcmI CCANNNNNNNNNTGG 1 cut(s) 446
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.