MD14G1134900.v1.1
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr14
OG0016333
Physical Location & Seq
Reverse (-)
21362366 .. 21362779
414 bp
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UTR
Exon/CDS
Intron
MD14G1134900.v1.1.491

Sequence Viewer

Length: 414 bp
ATGAAACATCTCCGACCTAATATAAAGCGAGGCAACATAACACCCGACGATGAGCTTATTCTCCGGCTTCATGCCCTTCTCGGCAATCGTTGGCCTCTCATCACCGGAAGACTTCCCGGTCGAACAGACAATGAGATCAAGAACTACTGGAATACTCATCTCAGCAGGAGATTCAAAAACCCTAGCACTGGTAAAGGAACCGAGAAACAAAGTAACACCCGAAAACGAGCATCAAAACCACAATGTGTTCCATCTGAGTCCAAGAAAAATGACCGAGGTCATATTAGTGCAGACGATGGTAGAGTAGAAGAGGACACAACAATTACCAAGATTCATATCCCAAACGCTATTAGGGGTTCTCCGTTCTCAACCCGAATCACGTCATTTCTGTTGGACTTTCCTGTTATACAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

138

Amino Acids

15.63

Weight (kDa)

10.42

Isoelectric Point (pI)

56.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 16 - 54 1.2e-12 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016333)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g11430
malus_domestica MD14G1134900.v1.1
prunus_persica Prupe.5G126600_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0186441
rosa_laevigata RLG00000004845
rosa_multiflora Rmu_sc0000645.1_g000043
rosa_roxburghii Rroxscaffold_2G00076400 Rroxscaffold_3G00268140
rosa_rugosa Rorug06G0474100
rosa_samantha Rh7AG067200 Rh7BG082900 Rh7CG080700 Rh7DG081300
rosa_wichuraiana Rw7G006780 Rw7G007010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 117
AdeI CACNNNGTG 1 cut(s) 245
AfiI CCNNNNNNNGG 1 cut(s) 188
AgsI TTSAA 1 cut(s) 175
AjiI CACGTC 1 cut(s) 381
AluBI AGCT 1 cut(s) 55
AluI AGCT 1 cut(s) 55
AoxI GGCC 1 cut(s) 92
AsuC2I CCSGG 1 cut(s) 117
AsuHPI GGTGA 1 cut(s) 94
BbsI GAAGAC 1 cut(s) 115
BccI CCATC 2 cut(s) 259, 290
BcnI CCSGG 1 cut(s) 117
BfaI CTAG 1 cut(s) 183
Bme1390I CCNGG 1 cut(s) 117
BmgBI CACGTC 1 cut(s) 381
BmiI GGNNCC 1 cut(s) 199
BmrFI CCNGG 1 cut(s) 117
BmsI GCATC 1 cut(s) 239
BoxI GACNNNNGTC 1 cut(s) 276
BpiI GAAGAC 1 cut(s) 115
BpuMI CCSGG 1 cut(s) 117
BsaBI GATNNNNATC 1 cut(s) 335
BsaJI CCNNGG 1 cut(s) 274
BsaWI WCCGGW 1 cut(s) 104
Bsc4I CCNNNNNNNGG 1 cut(s) 188
Bse1I ACTGG 2 cut(s) 152, 193
Bse8I GATNNNNATC 1 cut(s) 335
BseDI CCNNGG 1 cut(s) 274
BseJI GATNNNNATC 1 cut(s) 335
BseLI CCNNNNNNNGG 1 cut(s) 188
BseMII CTCAG 2 cut(s) 175, 246
BseNI ACTGG 2 cut(s) 152, 193
BsgI GTGCAG 1 cut(s) 309
Bsh1285I CGRYCG 1 cut(s) 121
BshFI GGCC 1 cut(s) 94
BsiEI CGRYCG 1 cut(s) 121
BsiSI CCGG 3 cut(s) 64, 105, 117
BslI CCNNNNNNNGG 1 cut(s) 188
BsnI GGCC 1 cut(s) 94
Bsp143I GATC 1 cut(s) 135
BspANI GGCC 1 cut(s) 94
BspCNI CTCAG 2 cut(s) 174, 247
BspLI GGNNCC 1 cut(s) 199
BsrI ACTGG 2 cut(s) 152, 193
BssECI CCNNGG 1 cut(s) 274
BssMI GATC 1 cut(s) 135
Bst4CI ACNGT 1 cut(s) 411
Bst6I CTCTTC 1 cut(s) 303
BstDEI CTNAG 2 cut(s) 161, 255
BstKTI GATC 1 cut(s) 138
BstMBI GATC 1 cut(s) 135
BstMCI CGRYCG 1 cut(s) 121
BstPAI GACNNNNGTC 1 cut(s) 276
BstSCI CCNGG 1 cut(s) 115
BstV2I GAAGAC 1 cut(s) 115
BsuRI GGCC 1 cut(s) 94
BtrI CACGTC 1 cut(s) 381
BtsIMutI CAGTG 1 cut(s) 186
CviAII CATG 1 cut(s) 71
CviJI RGCY 3 cut(s) 55, 67, 94
CviKI_1 RGCY 3 cut(s) 55, 67, 94
DdeI CTNAG 2 cut(s) 161, 255
DpnI GATC 1 cut(s) 137
DpnII GATC 1 cut(s) 135
DraIII CACNNNGTG 1 cut(s) 245
DrdI GACNNNNNNGTC 1 cut(s) 117
DseDI GACNNNNNNGTC 1 cut(s) 117
Eam1104I CTCTTC 1 cut(s) 303
EarI CTCTTC 1 cut(s) 303
FaeI CATG 1 cut(s) 74
FaiI YATR 6 cut(s) 23, 38, 72, 282, 336, 407
FatI CATG 1 cut(s) 70
FspBI CTAG 1 cut(s) 183
HaeIII GGCC 1 cut(s) 94
HapII CCGG 3 cut(s) 64, 105, 117
Hin1II CATG 1 cut(s) 74
HinfI GANTC 4 cut(s) 171, 257, 331, 375
HpaII CCGG 3 cut(s) 64, 105, 117
HphI GGTGA 1 cut(s) 94
Hpy188I TCNGA 2 cut(s) 14, 256
Hpy188III TCNNGA 1 cut(s) 139
Hpy99I CGWCG 1 cut(s) 50
HpyAV CCTTC 1 cut(s) 86
HpyCH4III ACNGT 1 cut(s) 411
HpyCH4IV ACGT 1 cut(s) 380
HpyCH4V TGCA 1 cut(s) 290
HpyF3I CTNAG 2 cut(s) 161, 255
HpySE526I ACGT 1 cut(s) 380
Hsp92II CATG 1 cut(s) 74
Kzo9I GATC 1 cut(s) 135
LpnPI CCDG 6 cut(s) 77, 118, 130, 133, 151, 174
LweI GCATC 1 cut(s) 239
MaeI CTAG 1 cut(s) 183
MaeII ACGT 1 cut(s) 380
MaeIII GTNAC 1 cut(s) 212
MalI GATC 1 cut(s) 137
MboI GATC 1 cut(s) 135
MboII GAAGA 2 cut(s) 120, 320
MluCI AATT 1 cut(s) 321
MlyI GAGTC 1 cut(s) 266
MmeI TCCRAC 2 cut(s) 37, 372
MnlI CCTC 4 cut(s) 23, 105, 269, 304
MslI CAYNNNNRTG 1 cut(s) 285
MspI CCGG 3 cut(s) 64, 105, 117
MspR9I CCNGG 1 cut(s) 117
NciI CCSGG 1 cut(s) 117
NdeII GATC 1 cut(s) 135
NlaIII CATG 1 cut(s) 74
NlaIV GGNNCC 1 cut(s) 199
NmeAIII GCCGAG 1 cut(s) 60
PfeI GAWTC 3 cut(s) 171, 331, 375
PleI GAGTC 1 cut(s) 265
PpsI GAGTC 1 cut(s) 265
PshAI GACNNNNGTC 1 cut(s) 276
PspN4I GGNNCC 1 cut(s) 199
RseI CAYNNNNRTG 1 cut(s) 285
Sau3AI GATC 1 cut(s) 135
SchI GAGTC 1 cut(s) 266
ScrFI CCNGG 1 cut(s) 117
SetI ASST 4 cut(s) 19, 57, 280, 383
SfaNI GCATC 1 cut(s) 239
SmiMI CAYNNNNRTG 1 cut(s) 285
Sse9I AATT 1 cut(s) 321
SspMI CTAG 1 cut(s) 183
StyD4I CCNGG 1 cut(s) 115
TaaI ACNGT 1 cut(s) 411
TaiI ACGT 1 cut(s) 383
TaqI TCGA 1 cut(s) 121
TaqII GACCGA 1 cut(s) 288
TasI AATT 1 cut(s) 321
TfiI GAWTC 3 cut(s) 171, 331, 375
TscAI CASTG 1 cut(s) 193
TspDTI ATGAA 3 cut(s) 17, 59, 323
TspGWI ACGGA 1 cut(s) 351
TspRI CASTG 1 cut(s) 193
XspI CTAG 1 cut(s) 183
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.