Rroxscaffold_2G00076400
MYB Family

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0016333
Physical Location & Seq
Forward (+)
269915 .. 270851
937 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00076400.1

Sequence Viewer

Length: 702 bp
ATGGGAAGAACACCATGTTGTTCAAAGGAGGGTTTGCAGAGAGGTCCGTGGACTACCATAGAAGACACATTGCTCATTCAATACATCCAGTCTCATGGTGAAGGGCATTGGATGTCTCTGCCAAAGAAAGCAGGGCTTCTTCGATGTGGGAAAAGTTGCAGGCTGAGATGGATGAACTATCTCCGACCAGGTATAAAGAGAGGTAACATAACTCCTGATGAGGAAGACCTTATTGTGAGGCTTCATTCACTTCTGGGAAATCGATGGTCTCTAATTGCTGGAAGACTCCCCGGTCGAACCGATAATGAGATCAAGAACTACTGGAATACCAACCGCAGCAAAAGGCTCAACAACGCTGGTAGTACTGAAAAAGGTGTATCTAGTGTTGAAGGACAACTCAAGAAGGATGACCGAGGCTGTGTAGCAAAGGTTAAGGTTCATCAACCAAAGGCCATTCGAGTTTCTGCAAACTCAATCATAAGAAACAATAACATCTTAGCTGAATTGGGTCATCTTGATGCAGAGGTTTCTAATGATCTTCATGATCATAAACATTTTGGAGAGGCCTTGGTTTGCGAAAATGTGATGGATTTTGATGTTTTTATTCAAGGGTATGAGGAATATCAGCAGCTTCTTCACAAGGCAGATCAAGATCTCGATGGTGTTCATTTGGATTCTTTTGTTGACTCCTTGTTGATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

233

Amino Acids

26.38

Weight (kDa)

7.69

Isoelectric Point (pI)

40.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 14 - 61 6.4e-14 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 67 - 111 6e-17 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 71 - 115 1.5e-06 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016333)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g11430
malus_domestica MD14G1134900.v1.1
prunus_persica Prupe.5G126600_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0186441
rosa_laevigata RLG00000004845
rosa_multiflora Rmu_sc0000645.1_g000043
rosa_roxburghii Rroxscaffold_2G00076400 Rroxscaffold_3G00268140
rosa_rugosa Rorug06G0474100
rosa_samantha Rh7AG067200 Rh7BG082900 Rh7CG080700 Rh7DG081300
rosa_wichuraiana Rw7G006780 Rw7G007010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 291
AciI CCGC 1 cut(s) 334
AfaI GTAC 1 cut(s) 364
AgsI TTSAA 4 cut(s) 24, 80, 389, 608
AjnI CCWGG 1 cut(s) 187
AluBI AGCT 2 cut(s) 500, 631
AluI AGCT 2 cut(s) 500, 631
Alw26I GTCTC 3 cut(s) 96, 120, 273
AoxI GGCC 2 cut(s) 450, 564
ApeKI GCWGC 2 cut(s) 336, 628
AspS9I GGNCC 1 cut(s) 44
AsuC2I CCSGG 1 cut(s) 291
AsuHPI GGTGA 1 cut(s) 110
AvaII GGWCC 1 cut(s) 44
BbsI GAAGAC 3 cut(s) 69, 231, 289
BbvI GCAGC 2 cut(s) 348, 640
BccI CCATC 4 cut(s) 162, 258, 580, 653
BciT130I CCWGG 1 cut(s) 189
BclI TGATCA 1 cut(s) 544
BcnI CCSGG 1 cut(s) 291
BcoDI GTCTC 3 cut(s) 96, 120, 273
BfaI CTAG 1 cut(s) 381
BglII AGATCT 1 cut(s) 652
BisI GCNGC 2 cut(s) 337, 629
BlsI GCNGC 2 cut(s) 338, 630
BmcAI AGTACT 1 cut(s) 364
Bme1390I CCNGG 2 cut(s) 189, 291
Bme18I GGWCC 1 cut(s) 44
BmgT120I GGNCC 1 cut(s) 44
BmrFI CCNGG 2 cut(s) 189, 291
BmsI GCATC 1 cut(s) 508
BpiI GAAGAC 3 cut(s) 69, 231, 289
BpuEI CTTGAG 1 cut(s) 383
BpuMI CCSGG 1 cut(s) 291
Bsa29I ATCGAT 1 cut(s) 262
BsaBI GATNNNNATC 1 cut(s) 651
BsaI GGTCTC 1 cut(s) 273
BsaJI CCNNGG 4 cut(s) 47, 289, 412, 567
Bse1I ACTGG 2 cut(s) 88, 326
Bse3DI GCAATG 1 cut(s) 68
Bse8I GATNNNNATC 1 cut(s) 651
BseBI CCWGG 1 cut(s) 189
BseCI ATCGAT 1 cut(s) 262
BseDI CCNNGG 4 cut(s) 47, 289, 412, 567
BseGI GGATG 4 cut(s) 84, 117, 177, 412
BseJI GATNNNNATC 1 cut(s) 651
BseMI GCAATG 1 cut(s) 68
BseMII CTCAG 1 cut(s) 155
BseNI ACTGG 2 cut(s) 88, 326
BseXI GCAGC 2 cut(s) 348, 640
Bsh1285I CGRYCG 1 cut(s) 295
BshFI GGCC 2 cut(s) 452, 566
BshVI ATCGAT 1 cut(s) 262
BsiEI CGRYCG 1 cut(s) 295
BsiSI CCGG 1 cut(s) 291
BsmAI GTCTC 3 cut(s) 96, 120, 273
BsnI GGCC 2 cut(s) 452, 566
Bso31I GGTCTC 1 cut(s) 273
Bsp143I GATC 5 cut(s) 309, 535, 544, 646, 652
BspACI CCGC 1 cut(s) 334
BspANI GGCC 2 cut(s) 452, 566
BspCNI CTCAG 1 cut(s) 156
BspDI ATCGAT 1 cut(s) 262
BspHI TCATGA 1 cut(s) 541
BspTNI GGTCTC 1 cut(s) 273
BsrDI GCAATG 1 cut(s) 68
BsrI ACTGG 2 cut(s) 88, 326
BssECI CCNNGG 4 cut(s) 47, 289, 412, 567
BssMI GATC 5 cut(s) 309, 535, 544, 646, 652
BssT1I CCWWGG 1 cut(s) 567
Bst2UI CCWGG 1 cut(s) 189
BstC8I GCNNGC 1 cut(s) 161
BstDEI CTNAG 2 cut(s) 164, 496
BstDSI CCRYGG 1 cut(s) 47
BstF5I GGATG 4 cut(s) 84, 117, 177, 412
BstKTI GATC 5 cut(s) 312, 538, 547, 649, 655
BstMAI GTCTC 3 cut(s) 96, 120, 273
BstMBI GATC 5 cut(s) 309, 535, 544, 646, 652
BstMCI CGRYCG 1 cut(s) 295
BstNI CCWGG 1 cut(s) 189
BstSCI CCNGG 2 cut(s) 187, 289
BstV1I GCAGC 2 cut(s) 348, 640
BstV2I GAAGAC 3 cut(s) 69, 231, 289
BstX2I RGATCY 1 cut(s) 652
BstXI CCANNNNNNTGG 1 cut(s) 95
BstYI RGATCY 1 cut(s) 652
Bsu15I ATCGAT 1 cut(s) 262
BsuRI GGCC 2 cut(s) 452, 566
BsuTUI ATCGAT 1 cut(s) 262
BtgI CCRYGG 1 cut(s) 47
BtsCI GGATG 4 cut(s) 84, 117, 177, 412
Cac8I GCNNGC 1 cut(s) 161
CciI TCATGA 1 cut(s) 541
Cfr13I GGNCC 1 cut(s) 44
ClaI ATCGAT 1 cut(s) 262
CsiI ACCWGGT 1 cut(s) 187
Csp6I GTAC 1 cut(s) 363
CviAII CATG 3 cut(s) 15, 95, 542
CviJI RGCY 9 cut(s) 136, 163, 241, 346, 417, 452, 500, 566, 631
CviKI_1 RGCY 9 cut(s) 136, 163, 241, 346, 417, 452, 500, 566, 631
CviQI GTAC 1 cut(s) 363
DdeI CTNAG 2 cut(s) 164, 496
DpnI GATC 5 cut(s) 311, 537, 546, 648, 654
DpnII GATC 5 cut(s) 309, 535, 544, 646, 652
DrdI GACNNNNNNGTC 1 cut(s) 291
DseDI GACNNNNNNGTC 1 cut(s) 291
Eco130I CCWWGG 1 cut(s) 567
Eco147I AGGCCT 1 cut(s) 566
Eco31I GGTCTC 1 cut(s) 273
Eco47I GGWCC 1 cut(s) 44
EcoRII CCWGG 1 cut(s) 187
EcoT14I CCWWGG 1 cut(s) 567
ErhI CCWWGG 1 cut(s) 567
FaeI CATG 3 cut(s) 18, 98, 545
FaiI YATR 9 cut(s) 16, 59, 96, 194, 209, 479, 543, 549, 615
FalI AAGNNNNNCTT 2 cut(s) 120, 152
FatI CATG 3 cut(s) 14, 94, 541
FbaI TGATCA 1 cut(s) 544
Fnu4HI GCNGC 2 cut(s) 337, 629
FokI GGATG 4 cut(s) 71, 124, 184, 419
Fsp4HI GCNGC 2 cut(s) 337, 629
FspBI CTAG 1 cut(s) 381
GluI GCNGC 2 cut(s) 337, 629
HaeIII GGCC 2 cut(s) 452, 566
HapII CCGG 1 cut(s) 291
Hin1II CATG 3 cut(s) 18, 98, 545
HincII GTYRAC 1 cut(s) 685
HindII GTYRAC 1 cut(s) 685
HinfI GANTC 3 cut(s) 285, 674, 686
HpaII CCGG 1 cut(s) 291
HphI GGTGA 1 cut(s) 110
Hpy166II GTNNAC 2 cut(s) 51, 685
Hpy188I TCNGA 1 cut(s) 185
Hpy188III TCNNGA 7 cut(s) 215, 313, 400, 515, 542, 650, 656
Hpy8I GTNNAC 2 cut(s) 51, 685
HpyAV CCTTC 3 cut(s) 95, 383, 397
HpyCH4V TGCA 4 cut(s) 37, 159, 467, 521
HpyF3I CTNAG 2 cut(s) 164, 496
Hsp92II CATG 3 cut(s) 18, 98, 545
Ksp22I TGATCA 1 cut(s) 544
Kzo9I GATC 5 cut(s) 309, 535, 544, 646, 652
Lsp1109I GCAGC 2 cut(s) 348, 640
LweI GCATC 1 cut(s) 508
MabI ACCWGGT 1 cut(s) 187
MaeI CTAG 1 cut(s) 381
MaeIII GTNAC 1 cut(s) 203
MalI GATC 5 cut(s) 311, 537, 546, 648, 654
MboI GATC 5 cut(s) 309, 535, 544, 646, 652
MboII GAAGA 7 cut(s) 18, 74, 131, 236, 294, 530, 626
MflI RGATCY 1 cut(s) 652
MluCI AATT 2 cut(s) 273, 503
MlyI GAGTC 2 cut(s) 279, 680
MmeI TCCRAC 1 cut(s) 208
MnlI CCTC 9 cut(s) 22, 35, 194, 214, 231, 407, 517, 556, 610
MseI TTAA 2 cut(s) 432, 700
MslI CAYNNNNRTG 1 cut(s) 516
MspI CCGG 1 cut(s) 291
MspR9I CCNGG 2 cut(s) 189, 291
MvaI CCWGG 1 cut(s) 189
NciI CCSGG 1 cut(s) 291
NdeII GATC 5 cut(s) 309, 535, 544, 646, 652
NlaIII CATG 3 cut(s) 18, 98, 545
PagI TCATGA 1 cut(s) 541
PceI AGGCCT 1 cut(s) 566
PfeI GAWTC 1 cut(s) 674
PkrI GCNGC 2 cut(s) 338, 630
PleI GAGTC 2 cut(s) 279, 680
PpsI GAGTC 2 cut(s) 279, 680
Psp6I CCWGG 1 cut(s) 187
PspGI CCWGG 1 cut(s) 187
PspPI GGNCC 1 cut(s) 44
PsuI RGATCY 1 cut(s) 652
RsaI GTAC 1 cut(s) 364
RsaNI GTAC 1 cut(s) 363
RseI CAYNNNNRTG 1 cut(s) 516
SaqAI TTAA 2 cut(s) 432, 700
SatI GCNGC 2 cut(s) 337, 629
Sau3AI GATC 5 cut(s) 309, 535, 544, 646, 652
Sau96I GGNCC 1 cut(s) 44
ScaI AGTACT 1 cut(s) 364
SchI GAGTC 2 cut(s) 279, 680
ScrFI CCNGG 2 cut(s) 189, 291
SexAI ACCWGGT 1 cut(s) 187
SfaNI GCATC 1 cut(s) 508
SinI GGWCC 1 cut(s) 44
SmiMI CAYNNNNRTG 1 cut(s) 516
SmlI CTYRAG 1 cut(s) 398
SmoI CTYRAG 1 cut(s) 398
Sse9I AATT 2 cut(s) 273, 503
SseBI AGGCCT 1 cut(s) 566
SsiI CCGC 1 cut(s) 334
SspMI CTAG 1 cut(s) 381
StuI AGGCCT 1 cut(s) 566
StyD4I CCNGG 2 cut(s) 187, 289
StyI CCWWGG 1 cut(s) 567
TaqI TCGA 5 cut(s) 142, 262, 295, 457, 657
TaqII GACCGA 1 cut(s) 426
TasI AATT 2 cut(s) 273, 503
TatI WGTACW 1 cut(s) 362
TfiI GAWTC 1 cut(s) 674
Tru1I TTAA 2 cut(s) 432, 700
Tru9I TTAA 2 cut(s) 432, 700
TseI GCWGC 2 cut(s) 336, 628
TspDTI ATGAA 5 cut(s) 188, 233, 428, 530, 656
TspGWI ACGGA 1 cut(s) 36
VpaK11BI GGWCC 1 cut(s) 44
XspI CTAG 1 cut(s) 381
ZrmI AGTACT 1 cut(s) 364
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.