Rh6DG509000
MYB Family

Trihelix transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0015554
Physical Location & Seq
Reverse (-)
66278229 .. 66280565
2337 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG509000.1

Sequence Viewer

Length: 1692 bp
ATGCAGTCTAATTTTGAAATAGCAGACCTCCCTTCTCAGCAACACTTGATGGACACCAACTCTTCCTCACCTGTTTTGCCCATTTTCTTTAATCCCCAAAATCAAAACCACCCCAGTTTCCACCGACAACTTGAGCACCAACAGTTGAGTCATCACCACCTTGTTCATCCCATTCCCATCACCCATGAGTTGTTTCAAGGATTACACCCACAACCAGAACAAGAGCAATCTGGAACACTGCATTGGCAGATGAGTCCTATAAATTTCAAGCTGGGTCTGAATGAGAACAGTGCCAGTGGTGAGGTTGCTCTGCTTGATGAAAACAGCCCTCTATTTCTTCAGAGCCGCCCACAAAATTTGGGTTTCAAAAGTTGGCAACCCCAGGAATTTAGCACTAGAAAAGAACCCTTTTGGAAGCCACATGAAACACAAGGCATGAAGCAGAAGCAAGCAACTGAAGGAGAGATATGCAAGGAATTGGAGAGCAAATACAGGCTATATGGTGAGCTTGAAGCAATTTATAGTCTTGGAAAGATTGGTGGGGTTAATAATAAGCAAACTGGTTCTGGGTCAGCTCTGACTAATGAAAACTCTCCCAAGAATGTGGACCTTGTTCCTGTGCCTTTTGGTGGTTCTCATGGCCTCAATGGTGGCCCAGCAGCTACAGCTGGAGTTGATGATGGGTCAGAAGCCTCCATTGAAGAAGAAGTTTCGTATAGGAAGGTTCAGAAGAGGAAGAGAAAGAGGAGGATGAAGGAGCAACTGAGTTCATCAACCACTCGATTTTTCGAGGGGTTAGTGAAGCGTGTGATGGATCACCAAGAGAGTCTGCACCACAAGTACTTGGCATTGATTGAGAAAATGGACAGAGAGAGGAGGGAGAGAGAAGCGGCTTGGAGACTTCAAGAGGCTGAGAAGCATAAGAGAAAAGCCATTGCCCAACTCCATGAACAGGCTCTAGCTTCAAAGAGAGAGTCGCTCATTGTTTCATACATTGAGAAAATCACAGGCCAAAAGGTCAACATTCCTTCTAGGGAAACCCCATCATTGTTGCAATGTGATTATTCAAATGGAGCTATGGAGGAGGAGTTGACGCCAGTCAAAGTTGATCAGACAAATAGCAGATGGCCTCAAAGTGAAGTTGAGGCTTTGATTCGAGTGAGAAGTAATATAGAATCCAAATTTCAGGAGCCAGGGCTTAAAGGGCCTCTTTGGGAACAGGTGAGTGCTTCAATGGCTTCATTGGGTTATCAGAGGAGTGCAAAGAGGTGCAAGGAGAAGTGGGAGAACATCAACAAGTACTTCAGGAAAACCAAAAACAGCCCAAAAAAACGTCCTCAGCAGTCCAAAACTTGCTCTTATTTTAATAAATTGGATCAGCTGTACTCTAGAACACCAATCACCAATCCCTCATCATCTTCGTATTGTTCTGGCAACCCTGTAGTTAGCATCGAAAGGCAAGGTTACTCGGAGCTTTTACAAGCGGTTCTTGATGGGAGTGAAACTCAAAACCTGTCTAGTGGGAACTTTGAAATGCTCTCTGAAATAGGGTCCAATAGGTTGGATTTTGATGGCATTACTAATGGTAAGGTAGAGCATCTGCGAGAAGACCATGGGAAGGAGAAGGAAAACCATGAGGATGATGGAAGCATGGAAGAAGAAGACATTGATGGTAATGATTCTGATGAGTAG

Protein Analysis

563

Amino Acids

64.02

Weight (kDa)

6.2

Isoelectric Point (pI)

59.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_4 PF13837 374 - 461 4e-25 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015554)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g31050
malus_domestica MD08G1071000.v1.1 MD15G1050800.v1.1
prunus_persica Prupe.1G405000_v2.0.a1 Prupe.1G405000_v2.0.a1 Prupe.1G405000_v2.0.a1
pyrus_communis pycom08g05880
rosa_chinensis RchiOBHm_Chr6g0311751
rosa_laevigata RLG00000010377
rosa_multiflora Rmu_sc0002888.1_g000038
rosa_roxburghii Rroxscaffold_7G00157340
rosa_samantha Rh6AG506800 Rh6BG517400 Rh6CG523200 Rh6DG509000
rosa_wichuraiana Rw6G044080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 346, 890, 1484
AclWI GGATC 2 cut(s) 822, 1383
AcsI RAATTY 4 cut(s) 262, 355, 386, 1181
AcuI CTGAAG 3 cut(s) 323, 477, 1288
AcyI GRCGYC 1 cut(s) 1094
AfaI GTAC 3 cut(s) 842, 1301, 1385
AfiI CCNNNNNNNGG 3 cut(s) 629, 952, 1618
AjnI CCWGG 2 cut(s) 381, 1192
AjuI GAANNNNNNNTTGG 2 cut(s) 226, 258
AluBI AGCT 9 cut(s) 271, 508, 575, 662, 668, 962, 1076, 1381, 1474
AluI AGCT 9 cut(s) 271, 508, 575, 662, 668, 962, 1076, 1381, 1474
Alw21I GWGCWC 1 cut(s) 138
Alw26I GTCTC 1 cut(s) 892
AlwI GGATC 2 cut(s) 822, 1383
AoxI GGCC 5 cut(s) 640, 652, 1009, 1127, 1205
ApeKI GCWGC 1 cut(s) 659
ApoI RAATTY 4 cut(s) 262, 355, 386, 1181
ArsI GACNNNNNNTTYG 2 cut(s) 959, 991
AspS9I GGNCC 4 cut(s) 607, 653, 1205, 1551
AsuHPI GGTGA 8 cut(s) 60, 146, 172, 311, 515, 809, 1234, 1393
AvaII GGWCC 2 cut(s) 607, 1551
BbsI GAAGAC 2 cut(s) 1614, 1668
Bbv12I GWGCWC 1 cut(s) 138
BbvCI CCTCAGC 1 cut(s) 1338
BbvI GCAGC 1 cut(s) 671
BciT130I CCWGG 2 cut(s) 383, 1194
BclI TGATCA 1 cut(s) 1108
BcoDI GTCTC 1 cut(s) 892
BfaI CTAG 5 cut(s) 396, 959, 1032, 1389, 1518
BfmI CTRYAG 2 cut(s) 663, 1440
BisI GCNGC 3 cut(s) 346, 660, 891
BlsI GCNGC 3 cut(s) 347, 661, 892
BmcAI AGTACT 2 cut(s) 842, 1301
Bme1390I CCNGG 2 cut(s) 383, 1194
Bme18I GGWCC 2 cut(s) 607, 1551
BmgT120I GGNCC 4 cut(s) 607, 653, 1205, 1551
BmiI GGNNCC 2 cut(s) 1191, 1552
BmrFI CCNGG 2 cut(s) 383, 1194
BmrI ACTGGG 1 cut(s) 108
BmsI GCATC 2 cut(s) 1458, 1606
BmuI ACTGGG 1 cut(s) 108
BoxI GACNNNNGTC 1 cut(s) 1097
BpiI GAAGAC 2 cut(s) 1614, 1668
BplI GAGNNNNNCTC 4 cut(s) 963, 995, 1489, 1521
BpmI CTGGAG 1 cut(s) 690
Bpu10I CCTNAGC 1 cut(s) 1338
BpuEI CTTGAG 1 cut(s) 152
BsaHI GRCGYC 1 cut(s) 1094
BsaJI CCNNGG 3 cut(s) 381, 1193, 1612
BsaXI ACNNNNNCTCC 2 cut(s) 1073, 1103
Bsc4I CCNNNNNNNGG 3 cut(s) 629, 952, 1618
Bse1I ACTGG 4 cut(s) 114, 294, 565, 1097
Bse3DI GCAATG 2 cut(s) 933, 1061
BseBI CCWGG 2 cut(s) 383, 1194
BseDI CCNNGG 3 cut(s) 381, 1193, 1612
BseGI GGATG 3 cut(s) 166, 756, 1645
BseLI CCNNNNNNNGG 3 cut(s) 629, 952, 1618
BseMI GCAATG 2 cut(s) 933, 1061
BseMII CTCAG 4 cut(s) 50, 755, 903, 1352
BseNI ACTGG 4 cut(s) 114, 294, 565, 1097
BseRI GAGGAG 5 cut(s) 760, 889, 1097, 1100, 1270
BseXI GCAGC 1 cut(s) 671
BseYI CCCAGC 2 cut(s) 271, 655
BsgI GTGCAG 1 cut(s) 815
BshFI GGCC 5 cut(s) 642, 654, 1011, 1129, 1207
BsiHKAI GWGCWC 1 cut(s) 138
BslI CCNNNNNNNGG 3 cut(s) 629, 952, 1618
BsmAI GTCTC 1 cut(s) 892
BsnI GGCC 5 cut(s) 642, 654, 1011, 1129, 1207
Bsp1286I GDGCHC 1 cut(s) 138
Bsp143I GATC 3 cut(s) 814, 1108, 1375
Bsp19I CCATGG 1 cut(s) 1612
BspACI CCGC 3 cut(s) 346, 890, 1484
BspANI GGCC 5 cut(s) 642, 654, 1011, 1129, 1207
BspCNI CTCAG 4 cut(s) 49, 756, 904, 1351
BspLI GGNNCC 2 cut(s) 1191, 1552
BspPI GGATC 2 cut(s) 822, 1383
BsrDI GCAATG 2 cut(s) 933, 1061
BsrI ACTGG 4 cut(s) 114, 294, 565, 1097
BssECI CCNNGG 3 cut(s) 381, 1193, 1612
BssMI GATC 3 cut(s) 814, 1108, 1375
BssNI GRCGYC 1 cut(s) 1094
BssT1I CCWWGG 1 cut(s) 1612
Bst2UI CCWGG 2 cut(s) 383, 1194
Bst4CI ACNGT 2 cut(s) 144, 290
Bst6I CTCTTC 3 cut(s) 67, 725, 731
BstACI GRCGYC 1 cut(s) 1094
BstC8I GCNNGC 1 cut(s) 450
BstDEI CTNAG 4 cut(s) 36, 764, 912, 1338
BstDSI CCRYGG 1 cut(s) 1612
BstF5I GGATG 3 cut(s) 166, 756, 1645
BstKTI GATC 3 cut(s) 817, 1111, 1378
BstMAI GTCTC 1 cut(s) 892
BstMBI GATC 3 cut(s) 814, 1108, 1375
BstMWI GCNNNNNNNGC 3 cut(s) 665, 1204, 1235
BstNI CCWGG 2 cut(s) 383, 1194
BstPAI GACNNNNGTC 1 cut(s) 1097
BstSCI CCNGG 2 cut(s) 381, 1192
BstSFI CTRYAG 2 cut(s) 663, 1440
BstV1I GCAGC 1 cut(s) 671
BstV2I GAAGAC 2 cut(s) 1614, 1668
BstXI CCANNNNNNTGG 2 cut(s) 604, 1561
BsuRI GGCC 5 cut(s) 642, 654, 1011, 1129, 1207
BtgI CCRYGG 1 cut(s) 1612
BtsCI GGATG 3 cut(s) 166, 756, 1645
BtsI GCAGTG 1 cut(s) 236
BtsIMutI CAGTG 3 cut(s) 236, 295, 301
Cac8I GCNNGC 1 cut(s) 450
Cfr13I GGNCC 4 cut(s) 607, 653, 1205, 1551
CseI GACGC 1 cut(s) 1102
Csp6I GTAC 3 cut(s) 841, 1300, 1384
CspCI CAANNNNNGTGG 2 cut(s) 339, 374
CviAII CATG 8 cut(s) 185, 422, 436, 638, 947, 1613, 1634, 1651
CviQI GTAC 3 cut(s) 841, 1300, 1384
DdeI CTNAG 4 cut(s) 36, 764, 912, 1338
DpnI GATC 3 cut(s) 816, 1110, 1377
DpnII GATC 3 cut(s) 814, 1108, 1375
Eam1104I CTCTTC 3 cut(s) 67, 725, 731
EarI CTCTTC 3 cut(s) 67, 725, 731
Eco130I CCWWGG 1 cut(s) 1612
Eco47I GGWCC 2 cut(s) 607, 1551
Eco57I CTGAAG 3 cut(s) 323, 477, 1288
EcoO109I RGGNCCY 1 cut(s) 1205
EcoRII CCWGG 2 cut(s) 381, 1192
EcoT14I CCWWGG 1 cut(s) 1612
ErhI CCWWGG 1 cut(s) 1612
FaeI CATG 8 cut(s) 188, 425, 439, 641, 950, 1616, 1637, 1654
FalI AAGNNNNNCTT 4 cut(s) 1194, 1226, 1473, 1505
FatI CATG 8 cut(s) 184, 421, 435, 637, 946, 1612, 1633, 1650
FbaI TGATCA 1 cut(s) 1108
Fnu4HI GCNGC 3 cut(s) 346, 660, 891
FokI GGATG 3 cut(s) 153, 763, 1652
Fsp4HI GCNGC 3 cut(s) 346, 660, 891
FspBI CTAG 5 cut(s) 396, 959, 1032, 1389, 1518
GluI GCNGC 3 cut(s) 346, 660, 891
GsaI CCCAGC 2 cut(s) 275, 659
GsuI CTGGAG 1 cut(s) 690
HaeIII GGCC 5 cut(s) 642, 654, 1011, 1129, 1207
HgaI GACGC 1 cut(s) 1102
Hin1I GRCGYC 1 cut(s) 1094
Hin1II CATG 8 cut(s) 188, 425, 439, 641, 950, 1616, 1637, 1654
HincII GTYRAC 2 cut(s) 1021, 1092
HindII GTYRAC 2 cut(s) 1021, 1092
HinfI GANTC 7 cut(s) 148, 253, 826, 974, 1153, 1175, 1679
HphI GGTGA 8 cut(s) 60, 146, 172, 311, 515, 809, 1234, 1393
Hpy166II GTNNAC 3 cut(s) 607, 1021, 1092
Hpy188III TCNNGA 6 cut(s) 231, 905, 1187, 1306, 1389, 1490
Hpy8I GTNNAC 3 cut(s) 607, 1021, 1092
HpyAV CCTTC 7 cut(s) 42, 452, 715, 748, 1038, 1612, 1618
HpyCH4III ACNGT 2 cut(s) 144, 290
HpyCH4IV ACGT 1 cut(s) 1333
HpyCH4V TGCA 7 cut(s) 4, 241, 471, 832, 1054, 1262, 1272
HpyF10VI GCNNNNNNNGC 3 cut(s) 665, 1204, 1235
HpyF3I CTNAG 4 cut(s) 36, 764, 912, 1338
HpySE526I ACGT 1 cut(s) 1333
Hsp92I GRCGYC 1 cut(s) 1094
Hsp92II CATG 8 cut(s) 188, 425, 439, 641, 950, 1616, 1637, 1654
Ksp22I TGATCA 1 cut(s) 1108
Kzo9I GATC 3 cut(s) 814, 1108, 1375
LmnI GCTCC 4 cut(s) 757, 1073, 1189, 1471
Lsp1109I GCAGC 1 cut(s) 671
LweI GCATC 2 cut(s) 1458, 1606
MaeI CTAG 5 cut(s) 396, 959, 1032, 1389, 1518
MaeII ACGT 1 cut(s) 1333
MaeIII GTNAC 1 cut(s) 1463
MalI GATC 3 cut(s) 816, 1110, 1377
MboI GATC 3 cut(s) 814, 1108, 1375
MhlI GDGCHC 1 cut(s) 138
MluCI AATT 8 cut(s) 10, 262, 355, 386, 476, 516, 1181, 1370
MlyI GAGTC 4 cut(s) 157, 262, 835, 983
MmeI TCCRAC 1 cut(s) 1542
MseI TTAA 4 cut(s) 90, 546, 1200, 1365
MslI CAYNNNNRTG 1 cut(s) 1638
MspA1I CMGCKG 2 cut(s) 668, 1381
MspR9I CCNGG 2 cut(s) 383, 1194
MvaI CCWGG 2 cut(s) 383, 1194
MwoI GCNNNNNNNGC 3 cut(s) 665, 1204, 1235
NcoI CCATGG 1 cut(s) 1612
NdeII GATC 3 cut(s) 814, 1108, 1375
NlaIII CATG 8 cut(s) 188, 425, 439, 641, 950, 1616, 1637, 1654
NlaIV GGNNCC 2 cut(s) 1191, 1552
PfeI GAWTC 3 cut(s) 1153, 1175, 1679
PkrI GCNGC 3 cut(s) 347, 661, 892
PleI GAGTC 4 cut(s) 156, 261, 834, 982
PpsI GAGTC 4 cut(s) 156, 261, 834, 982
PshAI GACNNNNGTC 1 cut(s) 1097
Psp6I CCWGG 2 cut(s) 381, 1192
PspFI CCCAGC 2 cut(s) 271, 655
PspGI CCWGG 2 cut(s) 381, 1192
PspN4I GGNNCC 2 cut(s) 1191, 1552
PspPI GGNCC 4 cut(s) 607, 653, 1205, 1551
PvuII CAGCTG 2 cut(s) 668, 1381
RsaI GTAC 3 cut(s) 842, 1301, 1385
RsaNI GTAC 3 cut(s) 841, 1300, 1384
RseI CAYNNNNRTG 1 cut(s) 1638
SaqAI TTAA 4 cut(s) 90, 546, 1200, 1365
SatI GCNGC 3 cut(s) 346, 660, 891
Sau3AI GATC 3 cut(s) 814, 1108, 1375
Sau96I GGNCC 4 cut(s) 607, 653, 1205, 1551
ScaI AGTACT 2 cut(s) 842, 1301
SchI GAGTC 4 cut(s) 157, 262, 835, 983
ScrFI CCNGG 2 cut(s) 383, 1194
SduI GDGCHC 1 cut(s) 138
SfaNI GCATC 2 cut(s) 1458, 1606
SfcI CTRYAG 2 cut(s) 663, 1440
SinI GGWCC 2 cut(s) 607, 1551
SmiMI CAYNNNNRTG 1 cut(s) 1638
SmlI CTYRAG 1 cut(s) 131
SmoI CTYRAG 1 cut(s) 131
Sse9I AATT 8 cut(s) 10, 262, 355, 386, 476, 516, 1181, 1370
SsiI CCGC 3 cut(s) 346, 890, 1484
SspMI CTAG 5 cut(s) 396, 959, 1032, 1389, 1518
StyD4I CCNGG 2 cut(s) 381, 1192
StyI CCWWGG 1 cut(s) 1612
TaaI ACNGT 2 cut(s) 144, 290
TaiI ACGT 1 cut(s) 1336
TaqI TCGA 4 cut(s) 781, 789, 1156, 1452
TasI AATT 8 cut(s) 10, 262, 355, 386, 476, 516, 1181, 1370
TatI WGTACW 3 cut(s) 840, 1299, 1383
TauI GCSGC 2 cut(s) 348, 893
TfiI GAWTC 3 cut(s) 1153, 1175, 1679
Tru1I TTAA 4 cut(s) 90, 546, 1200, 1365
Tru9I TTAA 4 cut(s) 90, 546, 1200, 1365
TscAI CASTG 3 cut(s) 243, 295, 301
TseI GCWGC 1 cut(s) 659
TspRI CASTG 3 cut(s) 243, 295, 301
VpaK11BI GGWCC 2 cut(s) 607, 1551
XapI RAATTY 4 cut(s) 262, 355, 386, 1181
XbaI TCTAGA 1 cut(s) 1388
XcmI CCANNNNNNNNNTGG 1 cut(s) 1640
XspI CTAG 5 cut(s) 396, 959, 1032, 1389, 1518
ZrmI AGTACT 2 cut(s) 842, 1301
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.