pycom08g05880
MYB Family

Trihelix transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
OG0015554
Physical Location & Seq
Reverse (-)
4455081 .. 4456870
1790 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom08g05880.1

Sequence Viewer

Length: 1674 bp
ATGCAGTCGAATTTTGAAACAGCAGAGATTGGTAATCAACAGTTCATGGATTCTAGGTCATCAGTTTTACCAATCTTCAGTCCTCAGAAGCAAAACCAGAACCATTTCCTTCAACAGTTTCATCAGCAGCAGCCGTTTAGTCATGTCAGTCAAATAGCTCAACCGATTCCGATTACCCACGACCTGTTTCAACGACAGAATCATCTCCAGTTCCAAGCGTTGCTGCAGCAGCAGCAGCAAGAACAGCAGGAAGAAAGCAGGCTGCCATGGCAGCCGAGCCCTCTAAGTTTCAAGCTTGGTCTCAGTGAAAACAGTGGACCACATAACTTAGGATTAAAAAATTGGCAAACCCAAGAATATTATGGGATTATAAGAGAACCCATGTGCAGTTGGAAGCCTCTTGACGCGATAGTCCCCGACACAACAAACAACAGGCAGAGGCAGGAAGAAGGGGAGAGATGCAGGGACTTGGAGGAAAAACACAGGCTTTATGGTGAGCTTGAAGCAATCTATAACCTTGCAAAGATGGGGGAGGGTAATCAGAATCAAACTGGCTCTGGCTCTGCTCTCACCGGCGAAAACTGCCTGAAAAATGTGGGATTTCCTGTGGTTTTTGGTGATTCTAATGGCCTCAATGTTGCTCCAGCTGATACATTTAGGGCAGATAACAGATCGGAAGACTCCATTGGAGAAGAGGTGTTGGTGAGGAAGATTCGGAAGAGGAAGAGGAAAATGAAGGAGCAATTAAGTTCAATGACTAGGTTTTTTGAGAACTTGGTGAAGCAGGTTGTGGATCACCAAGAGAATCTTCATAAGAAGTATTTGGAAGTGATTGAAAAAATGGACAAAGAGAGAAGGGAGAGAGAAGAAGCATGGAGATATCAAGCGGAGGAGAACCATAAGAGAGAAGCCATGGGCAAACTCCATGAGCAGGCTATAGCTTCAAGCAGAGAAGCTCTCATTGTTTCATACATTGAGAAAATCACTGGCCAAAGAGTCAACCTTCCTCCTAGGGAAATCCCATTGTTGTTGCAGCCTGATAATTCAAGCGAACCTGAAACCGCAGAGGAATTGACACCCTCCAAAGCTGATAACGCAAATAGCAGATGGCCTCAAAATGAAGTCGAGGCTTTGATTCTAGTGCGCAGTAGTGTAGAGTCGAAATTTGCGGAACTGGGGTCAAAAGGGCATGTTTGGGAAGAGGTGAGTGCTTTAATGGCTTCAATGGGCTATCAGAAAAGTGCCAGAAGGTGCAAGCAAAAGTGGGAGAACATCAACAAGTACTTTAGGAAAACCAAAGACACTGCGAAAAAGCGTCCTCTGAAGTCGAAAACTTGTTCTTATTTTAGTCAATTGGGTCAGCTGTACTCAAAAACACCGACCGTCCCTTCATTGTCGTCTTCGGTTAGCATGGATGTTAGCATTCAAAGGCAAGGATGTTCGGAGCTTTTAGAAGCCTTTATTGCAGGAAGAGAGACGGGAGTTACACATAATCTGCCAAATGGGAATTTTGAAATCTCCGAAAAGGGTTCGAGTAGGTTGGATTTCAATGGCATTGGTGATGGTAAAGTAGAACATGTGCAAGGAGACTCTGGGAAGGAGAAGGAAAACGATGAGGATGATGAAAACATGGATGAAAGAGAAGAGATAGATGGTGATGATTCTGACGACTAA

Protein Analysis

558

Amino Acids

63.76

Weight (kDa)

5.58

Isoelectric Point (pI)

52.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_4 PF13837 368 - 454 7.8e-22 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015554)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g31050
malus_domestica MD08G1071000.v1.1 MD15G1050800.v1.1
prunus_persica Prupe.1G405000_v2.0.a1 Prupe.1G405000_v2.0.a1 Prupe.1G405000_v2.0.a1
pyrus_communis pycom08g05880
rosa_chinensis RchiOBHm_Chr6g0311751
rosa_laevigata RLG00000010377
rosa_multiflora Rmu_sc0002888.1_g000038
rosa_roxburghii Rroxscaffold_7G00157340
rosa_samantha Rh6AG506800 Rh6BG517400 Rh6CG523200 Rh6DG509000
rosa_wichuraiana Rw6G044080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 371
AasI GACNNNNNNGTC 1 cut(s) 410
Acc16I TGCGCA 1 cut(s) 1145
Acc36I ACCTGC 1 cut(s) 775
AccII CGCG 1 cut(s) 407
AciI CCGC 3 cut(s) 887, 1062, 1169
AclWI GGATC 1 cut(s) 801
AcoI YGGCCR 1 cut(s) 988
AcsI RAATTY 3 cut(s) 10, 1163, 1507
AcuI CTGAAG 2 cut(s) 61, 1343
AfaI GTAC 2 cut(s) 1283, 1367
AfiI CCNNNNNNNGG 1 cut(s) 931
AflIII ACRYGT 1 cut(s) 1576
AjuI GAANNNNNNNTTGG 4 cut(s) 669, 701, 792, 824
AluBI AGCT 9 cut(s) 158, 295, 499, 647, 941, 956, 1088, 1363, 1447
AluI AGCT 9 cut(s) 158, 295, 499, 647, 941, 956, 1088, 1363, 1447
Alw26I GTCTC 3 cut(s) 305, 1469, 1581
AlwI GGATC 1 cut(s) 801
AoxI GGCC 3 cut(s) 628, 988, 1109
ApoI RAATTY 3 cut(s) 10, 1163, 1507
Asp700I GAANNNNTTC 1 cut(s) 104
AspA2I CCTAGG 1 cut(s) 1010
AspLEI GCGC 1 cut(s) 1146
AspS9I GGNCC 1 cut(s) 317
AsuHPI GGTGA 9 cut(s) 506, 562, 629, 715, 788, 790, 1216, 1571, 1667
AvaII GGWCC 1 cut(s) 317
AvrII CCTAGG 1 cut(s) 1010
BalI TGGCCA 1 cut(s) 990
BanII GRGCYC 1 cut(s) 281
BbsI GAAGAC 2 cut(s) 684, 1392
BccI CCATC 4 cut(s) 520, 1101, 1556, 1646
BceAI ACGGC 1 cut(s) 118
BcoDI GTCTC 3 cut(s) 305, 1469, 1581
BfaI CTAG 4 cut(s) 54, 759, 1011, 1139
BfmI CTRYAG 2 cut(s) 224, 936
BfuAI ACCTGC 1 cut(s) 775
BlnI CCTAGG 1 cut(s) 1010
BmcAI AGTACT 1 cut(s) 1283
Bme18I GGWCC 1 cut(s) 317
BmgT120I GGNCC 1 cut(s) 317
BmrI ACTGGG 1 cut(s) 1184
BmsI GCATC 1 cut(s) 449
BmuI ACTGGG 1 cut(s) 1184
BpiI GAAGAC 2 cut(s) 684, 1392
BplI GAGNNNNNCTC 2 cut(s) 942, 974
BpmI CTGGAG 2 cut(s) 191, 627
BsaI GGTCTC 1 cut(s) 305
BsaJI CCNNGG 3 cut(s) 266, 912, 1010
BsaXI ACNNNNNCTCC 2 cut(s) 681, 711
Bsc4I CCNNNNNNNGG 1 cut(s) 931
Bse118I RCCGGY 1 cut(s) 572
Bse1I ACTGG 4 cut(s) 208, 556, 991, 1179
BseDI CCNNGG 3 cut(s) 266, 912, 1010
BseGI GGATG 4 cut(s) 1420, 1442, 1624, 1639
BseLI CCNNNNNNNGG 1 cut(s) 931
BseMII CTCAG 2 cut(s) 98, 316
BseNI ACTGG 4 cut(s) 208, 556, 991, 1179
BseRI GAGGAG 1 cut(s) 905
BsgI GTGCAG 1 cut(s) 406
Bsh1236I CGCG 1 cut(s) 407
Bsh1285I CGRYCG 1 cut(s) 1383
BshFI GGCC 3 cut(s) 630, 990, 1111
BsiEI CGRYCG 1 cut(s) 1383
BsiSI CCGG 1 cut(s) 573
BslFI GGGAC 3 cut(s) 398, 479, 1370
BslI CCNNNNNNNGG 1 cut(s) 931
BsmAI GTCTC 3 cut(s) 305, 1469, 1581
BsmBI CGTCTC 1 cut(s) 1469
BsmFI GGGAC 3 cut(s) 398, 479, 1370
BsmI GAATGC 1 cut(s) 1422
BsnI GGCC 3 cut(s) 630, 990, 1111
Bso31I GGTCTC 1 cut(s) 305
Bsp1286I GDGCHC 1 cut(s) 281
Bsp143I GATC 2 cut(s) 671, 793
Bsp19I CCATGG 2 cut(s) 266, 912
BspACI CCGC 3 cut(s) 887, 1062, 1169
BspANI GGCC 3 cut(s) 630, 990, 1111
BspCNI CTCAG 2 cut(s) 97, 315
BspFNI CGCG 1 cut(s) 407
BspMAI CTGCAG 1 cut(s) 228
BspMI ACCTGC 1 cut(s) 775
BspPI GGATC 1 cut(s) 801
BspTNI GGTCTC 1 cut(s) 305
BsrFI RCCGGY 1 cut(s) 572
BsrI ACTGG 4 cut(s) 208, 556, 991, 1179
BssAI RCCGGY 1 cut(s) 572
BssECI CCNNGG 3 cut(s) 266, 912, 1010
BssMI GATC 2 cut(s) 671, 793
BssT1I CCWWGG 3 cut(s) 266, 912, 1010
Bst4CI ACNGT 4 cut(s) 42, 117, 314, 1384
Bst6I CTCTTC 6 cut(s) 687, 713, 719, 1194, 1465, 1638
BstC8I GCNNGC 3 cut(s) 260, 933, 1256
BstDEI CTNAG 4 cut(s) 84, 284, 302, 328
BstDSI CCRYGG 2 cut(s) 266, 912
BstF5I GGATG 4 cut(s) 1420, 1442, 1624, 1639
BstFNI CGCG 1 cut(s) 407
BstHHI GCGC 1 cut(s) 1146
BstKTI GATC 2 cut(s) 674, 796
BstMAI GTCTC 3 cut(s) 305, 1469, 1581
BstMBI GATC 2 cut(s) 671, 793
BstMCI CGRYCG 1 cut(s) 1383
BstNSI RCATGY 2 cut(s) 1193, 1580
BstSFI CTRYAG 2 cut(s) 224, 936
BstUI CGCG 1 cut(s) 407
BstV2I GAAGAC 2 cut(s) 684, 1392
BsuRI GGCC 3 cut(s) 630, 990, 1111
BtgI CCRYGG 2 cut(s) 266, 912
BtsCI GGATG 4 cut(s) 1420, 1442, 1624, 1639
BtsI GCAGTG 1 cut(s) 1302
BtsIMutI CAGTG 4 cut(s) 310, 319, 984, 1302
BveI ACCTGC 1 cut(s) 775
Cac8I GCNNGC 3 cut(s) 260, 933, 1256
CfoI GCGC 1 cut(s) 1146
Cfr10I RCCGGY 1 cut(s) 572
Cfr13I GGNCC 1 cut(s) 317
CseI GACGC 2 cut(s) 413, 1304
Csp6I GTAC 2 cut(s) 1282, 1366
CviQI GTAC 2 cut(s) 1282, 1366
DdeI CTNAG 4 cut(s) 84, 284, 302, 328
DpnI GATC 2 cut(s) 673, 795
DpnII GATC 2 cut(s) 671, 793
DrdI GACNNNNNNGTC 1 cut(s) 410
DseDI GACNNNNNNGTC 1 cut(s) 410
EaeI YGGCCR 1 cut(s) 988
Eam1104I CTCTTC 6 cut(s) 687, 713, 719, 1194, 1465, 1638
EarI CTCTTC 6 cut(s) 687, 713, 719, 1194, 1465, 1638
Eco130I CCWWGG 3 cut(s) 266, 912, 1010
Eco24I GRGCYC 1 cut(s) 281
Eco31I GGTCTC 1 cut(s) 305
Eco32I GATATC 1 cut(s) 881
Eco47I GGWCC 1 cut(s) 317
Eco57I CTGAAG 2 cut(s) 61, 1343
EcoRV GATATC 1 cut(s) 881
EcoT14I CCWWGG 3 cut(s) 266, 912, 1010
EcoT38I GRGCYC 1 cut(s) 281
ErhI CCWWGG 3 cut(s) 266, 912, 1010
Esp3I CGTCTC 1 cut(s) 1469
FalI AAGNNNNNCTT 2 cut(s) 792, 824
FaqI GGGAC 3 cut(s) 398, 479, 1370
FokI GGATG 4 cut(s) 1427, 1449, 1631, 1646
FriOI GRGCYC 1 cut(s) 281
FspBI CTAG 4 cut(s) 54, 759, 1011, 1139
FspI TGCGCA 1 cut(s) 1145
GlaI GCGC 1 cut(s) 1145
GsuI CTGGAG 2 cut(s) 191, 627
HaeIII GGCC 3 cut(s) 630, 990, 1111
HapII CCGG 1 cut(s) 573
HgaI GACGC 2 cut(s) 413, 1304
HhaI GCGC 1 cut(s) 1146
Hin6I GCGC 1 cut(s) 1144
HinP1I GCGC 1 cut(s) 1144
HincII GTYRAC 1 cut(s) 1000
HindII GTYRAC 1 cut(s) 1000
HindIII AAGCTT 1 cut(s) 293
HpaII CCGG 1 cut(s) 573
HphI GGTGA 9 cut(s) 506, 562, 629, 715, 788, 790, 1216, 1571, 1667
Hpy166II GTNNAC 2 cut(s) 317, 1000
Hpy188III TCNNGA 1 cut(s) 401
Hpy8I GTNNAC 2 cut(s) 317, 1000
HpyAV CCTTC 9 cut(s) 119, 443, 730, 849, 1013, 1242, 1398, 1591, 1597
HpyCH4III ACNGT 4 cut(s) 42, 117, 314, 1384
HpyCH4V TGCA 9 cut(s) 4, 226, 387, 462, 521, 1033, 1254, 1466, 1582
HpyF3I CTNAG 4 cut(s) 84, 284, 302, 328
HspAI GCGC 1 cut(s) 1144
Kzo9I GATC 2 cut(s) 671, 793
LmnI GCTCC 3 cut(s) 646, 739, 1444
LweI GCATC 1 cut(s) 449
MaeI CTAG 4 cut(s) 54, 759, 1011, 1139
MaeIII GTNAC 1 cut(s) 1483
MalI GATC 2 cut(s) 673, 795
MboI GATC 2 cut(s) 671, 793
MfeI CAATTG 1 cut(s) 1352
MhlI GDGCHC 1 cut(s) 281
MlsI TGGCCA 1 cut(s) 990
MluCI AATT 8 cut(s) 10, 340, 743, 1042, 1070, 1163, 1352, 1507
MluNI TGGCCA 1 cut(s) 990
MlyI GAGTC 4 cut(s) 674, 1005, 1166, 1583
MmeI TCCRAC 2 cut(s) 371, 1521
Mox20I TGGCCA 1 cut(s) 990
MroXI GAANNNNTTC 1 cut(s) 104
MscI TGGCCA 1 cut(s) 990
MseI TTAA 3 cut(s) 335, 746, 1214
Msp20I TGGCCA 1 cut(s) 990
MspA1I CMGCKG 2 cut(s) 647, 1363
MspI CCGG 1 cut(s) 573
MunI CAATTG 1 cut(s) 1352
Mva1269I GAATGC 1 cut(s) 1422
MvnI CGCG 1 cut(s) 407
NcoI CCATGG 2 cut(s) 266, 912
NdeII GATC 2 cut(s) 671, 793
NmeAIII GCCGAG 1 cut(s) 300
NsbI TGCGCA 1 cut(s) 1145
NspI RCATGY 2 cut(s) 1193, 1580
PciI ACATGT 1 cut(s) 1576
PctI GAATGC 1 cut(s) 1422
PdmI GAANNNNTTC 1 cut(s) 104
PfeI GAWTC 9 cut(s) 50, 166, 199, 544, 620, 712, 805, 1135, 1661
PleI GAGTC 4 cut(s) 674, 1004, 1165, 1583
PpsI GAGTC 4 cut(s) 674, 1004, 1165, 1583
PscI ACATGT 1 cut(s) 1576
PsiI TTATAA 1 cut(s) 371
PspPI GGNCC 1 cut(s) 317
PstI CTGCAG 1 cut(s) 228
PvuII CAGCTG 2 cut(s) 647, 1363
RsaI GTAC 2 cut(s) 1283, 1367
RsaNI GTAC 2 cut(s) 1282, 1366
SaqAI TTAA 3 cut(s) 335, 746, 1214
Sau3AI GATC 2 cut(s) 671, 793
Sau96I GGNCC 1 cut(s) 317
ScaI AGTACT 1 cut(s) 1283
SchI GAGTC 4 cut(s) 674, 1005, 1166, 1583
SduI GDGCHC 1 cut(s) 281
SfaNI GCATC 1 cut(s) 449
SfcI CTRYAG 2 cut(s) 224, 936
SgrAI CRCCGGYG 1 cut(s) 572
SinI GGWCC 1 cut(s) 317
Sse9I AATT 8 cut(s) 10, 340, 743, 1042, 1070, 1163, 1352, 1507
SsiI CCGC 3 cut(s) 887, 1062, 1169
SspI AATATT 1 cut(s) 359
SspMI CTAG 4 cut(s) 54, 759, 1011, 1139
StyI CCWWGG 3 cut(s) 266, 912, 1010
TaaI ACNGT 4 cut(s) 42, 117, 314, 1384
TaqI TCGA 5 cut(s) 8, 1125, 1160, 1328, 1532
TasI AATT 8 cut(s) 10, 340, 743, 1042, 1070, 1163, 1352, 1507
TatI WGTACW 2 cut(s) 1281, 1365
TfiI GAWTC 9 cut(s) 50, 166, 199, 544, 620, 712, 805, 1135, 1661
Tru1I TTAA 3 cut(s) 335, 746, 1214
Tru9I TTAA 3 cut(s) 335, 746, 1214
TscAI CASTG 4 cut(s) 310, 319, 991, 1309
TspDTI ATGAA 9 cut(s) 34, 110, 749, 800, 957, 1134, 1380, 1638, 1650
TspRI CASTG 4 cut(s) 310, 319, 991, 1309
VpaK11BI GGWCC 1 cut(s) 317
XapI RAATTY 3 cut(s) 10, 1163, 1507
XceI RCATGY 2 cut(s) 1193, 1580
XcmI CCANNNNNNNNNTGG 1 cut(s) 359
XmaJI CCTAGG 1 cut(s) 1010
XmnI GAANNNNTTC 1 cut(s) 104
XspI CTAG 4 cut(s) 54, 759, 1011, 1139
ZrmI AGTACT 1 cut(s) 1283
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.