Prupe.1G405000_v2.0.a1
MYB Family

Trihelix transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0015554
Physical Location & Seq
Forward (+)
35625833 .. 35630758
4926 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G405000.3

Sequence Viewer

Length: 1731 bp
ATGCAGTCTAATTTTGACATATCAGAGATTGGTAACCAGCAACACTTGATGGATATTAGTAATTCTTGCTCACCAATTTTGCCCATGTTCAATCATCAGAAGCAAAACCCCCACCACCCCCATTTCAATCAACAACTTGAGCAGCCTGAGCCATATCATATCAGTCACCTTGTTCATCCCACTCCCATTACCCACGACTTGTTTCAACGCCAGCATCTTCAAGCATTGCAGCAGCAAGGAAGGTTGCACTGGCAGCTGGGTCCTGTAAATTTCAAGCTTGGTCTCAATGAGAACAGTGGAAATGGAGAAAGTGCTCTGCTTGGCGCTGGTTTGTTTGATGATGAAAATGGAGACGACCCTCGATTGCTTCAGAGTCGAATGCATAACTTAGGATTCAAAAGTTGGCAAACCCATGAACCCATGTGCTGGAAGCCTCTCGATGCAGCAATTCCCGAGACCAACAGAAAGCAGAAGGAAGCCAATGAAGGAGATATATGCAAGGACTTGGAGAACAAATACAGGCTCTATGGTGAGCTTGAAGCAATCTATAGCCTTGCAAAGATGGGCGAGGCTAATCAAACGGGCTCTGGCTCTGCACTCACTGGTGAAAACTCCCCTAAAAATGTAGACTTGCCTGTGCCTTTTTGTGATCCACATGACCTCAATGTTGCTCCAACTGCTCAAGTTAGGGTGGATAATGGGTCGGAAGCCTCCATCGGAGAAGAGTCTTCGCCGAGGAAGATTGAGAAGAGGAAGAGAAAGAGGACAATGAAGAAACAATTAAGTTCAGTGATTAGCTTCTTTGAGAGCTTGGTGAAGCAGGTTATGGATCACCAAGAGAATCTTCATAAGAAGTATTTGGAAGTGATTGAAAGAATGGATAAAGAGAGGAGGGAGAGAGAAGCTGCATGGAGAAGTCAAGAGGCTGAAAACCATAAGAGAGAAGCCATTGCCAAAGTCCATGAACAGGCTCTGGCTTCAAGCAGAGAGGCACTCATTGTTTCTTACATTGAGAAAATCACTGGCCAAAGAGTCAATCTTCCTTCAAGGCAAGCCCCATTGTTGTTGCAGCCTGATAATTTAAATGAACCCCCAGTGGAGGAATTGACACCCTTCAAAATTGATCACACAAATAGCAGATGGCCTCAAAGTGAAGTTAAGGCATTGATTCTAGTGCGAAGTAGTATAGAATCAAAGTTTCAGGAACCAGGGGTGAAAGGGCCTGTTTGGGAAGAGGTCAGTGTTTTAATGGGTTCAATGGGTTATCAAAGGAGTGCCAAAAGGTGCAAACAAAAGTGGGAGAACATCAACAAGTACTTTAGAAAAACCAAAGACAGTGCCAAAAAGCGTCCTCATAATTTCAAAACTTGCTCGTATTTTAATCAGTTGGATCAGCTGTACTCAGGAACACCCATCACCGCCCCTTCATCTTCGTCTTCCTATTATTCTAGTAACCCTTCAGCTAGCATGGATGATAACATTCCAAAGCAAGGTTTTTCAGATCTTTTGGAAGCCTTCGTTGCAGGGAGAGAGGCAGGAGTTGCACATAATCTGTCTAGTGGCAATTTTGAAATCTCTGAAATGGGGTCCAATAGGTTGGATTTTGATGGCATTATTGGTGGTAAGGTAGAAGATGTGCAAGGAGACCTTGTGAAGGAGAAGGAAAACCGTGAGGATGACGAGAACGTGGATGAAACGGAAGATACTGATGATGATGATTCTGATGAATGA

Protein Analysis

577

Amino Acids

65.32

Weight (kDa)

5.57

Isoelectric Point (pI)

53.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015554)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g31050
malus_domestica MD08G1071000.v1.1 MD15G1050800.v1.1
prunus_persica Prupe.1G405000_v2.0.a1 Prupe.1G405000_v2.0.a1 Prupe.1G405000_v2.0.a1
pyrus_communis pycom08g05880
rosa_chinensis RchiOBHm_Chr6g0311751
rosa_laevigata RLG00000010377
rosa_multiflora Rmu_sc0002888.1_g000038
rosa_roxburghii Rroxscaffold_7G00157340
rosa_samantha Rh6AG506800 Rh6BG517400 Rh6CG523200 Rh6DG509000
rosa_wichuraiana Rw6G044080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 811
AccB7I CCANNNNNTGG 1 cut(s) 426
AccI GTMKAC 1 cut(s) 627
AciI CCGC 1 cut(s) 1419
AclWI GGATC 3 cut(s) 644, 837, 1398
AcoI YGGCCR 1 cut(s) 1024
AcsI RAATTY 1 cut(s) 268
AcuI CTGAAG 2 cut(s) 353, 1443
AfaI GTAC 2 cut(s) 1316, 1400
AfiI CCNNNNNNNGG 5 cut(s) 426, 967, 1099, 1490, 1654
AjnI CCWGG 1 cut(s) 1207
AjuI GAANNNNNNNTTGG 2 cut(s) 828, 860
AluBI AGCT 8 cut(s) 256, 277, 535, 798, 810, 905, 1396, 1463
AluI AGCT 8 cut(s) 256, 277, 535, 798, 810, 905, 1396, 1463
Alw21I GWGCWC 1 cut(s) 316
Alw26I GTCTC 4 cut(s) 287, 345, 449, 1638
AlwI GGATC 3 cut(s) 644, 837, 1398
AlwNI CAGNNNCTG 1 cut(s) 973
Ama87I CYCGRG 1 cut(s) 452
AoxI GGCC 3 cut(s) 1024, 1142, 1220
ApeKI GCWGC 7 cut(s) 142, 229, 232, 253, 443, 905, 1069
ApoI RAATTY 1 cut(s) 268
AspLEI GCGC 1 cut(s) 326
AspS9I GGNCC 3 cut(s) 260, 1220, 1587
AsuHPI GGTGA 8 cut(s) 63, 158, 542, 617, 824, 826, 1225, 1408
AsuNHI GCTAGC 1 cut(s) 1463
AvaI CYCGRG 1 cut(s) 452
AvaII GGWCC 2 cut(s) 260, 1587
BalI TGGCCA 1 cut(s) 1026
BanII GRGCYC 1 cut(s) 587
BbsI GAAGAC 2 cut(s) 720, 1428
Bbv12I GWGCWC 1 cut(s) 316
BbvI GCAGC 7 cut(s) 154, 241, 244, 265, 455, 892, 1081
BccI CCATC 6 cut(s) 43, 556, 722, 1134, 1421, 1601
BciT130I CCWGG 1 cut(s) 1209
BclI TGATCA 1 cut(s) 1123
BcoDI GTCTC 4 cut(s) 287, 345, 449, 1638
BfaI CTAG 4 cut(s) 1172, 1449, 1464, 1557
BfmI CTRYAG 1 cut(s) 547
BfoI RGCGCY 1 cut(s) 327
BfuAI ACCTGC 1 cut(s) 811
BglII AGATCT 1 cut(s) 1501
BisI GCNGC 7 cut(s) 143, 230, 233, 254, 444, 906, 1070
BlsI GCNGC 7 cut(s) 144, 231, 234, 255, 445, 907, 1071
BmcAI AGTACT 1 cut(s) 1316
Bme1390I CCNGG 1 cut(s) 1209
Bme18I GGWCC 2 cut(s) 260, 1587
BmeT110I CYCGRG 1 cut(s) 452
BmgT120I GGNCC 3 cut(s) 260, 1220, 1587
BmiI GGNNCC 3 cut(s) 261, 1206, 1588
BmrFI CCNGG 1 cut(s) 1209
BmrI ACTGGG 1 cut(s) 1088
BmsI GCATC 2 cut(s) 223, 430
BmtI GCTAGC 1 cut(s) 1467
BmuI ACTGGG 1 cut(s) 1088
BpiI GAAGAC 2 cut(s) 720, 1428
BplI GAGNNNNNCTC 2 cut(s) 978, 1010
Bpu10I CCTNAGC 1 cut(s) 147
BpuEI CTTGAG 2 cut(s) 158, 666
BsaI GGTCTC 3 cut(s) 287, 449, 1638
BsaJI CCNNGG 2 cut(s) 734, 1208
BsaXI ACNNNNNCTCC 2 cut(s) 1635, 1665
Bsc4I CCNNNNNNNGG 5 cut(s) 426, 967, 1099, 1490, 1654
Bse1I ACTGG 4 cut(s) 254, 607, 1027, 1094
Bse3DI GCAATG 2 cut(s) 224, 948
BseBI CCWGG 1 cut(s) 1209
BseDI CCNNGG 2 cut(s) 734, 1208
BseGI GGATG 4 cut(s) 175, 1477, 1681, 1696
BseLI CCNNNNNNNGG 5 cut(s) 426, 967, 1099, 1490, 1654
BseMI GCAATG 2 cut(s) 224, 948
BseMII CTCAG 2 cut(s) 138, 1416
BseNI ACTGG 4 cut(s) 254, 607, 1027, 1094
BseRI GAGGAG 1 cut(s) 904
BseXI GCAGC 7 cut(s) 154, 241, 244, 265, 455, 892, 1081
BseYI CCCAGC 1 cut(s) 256
BsgI GTGCAG 1 cut(s) 579
BshFI GGCC 3 cut(s) 1026, 1144, 1222
BsiHKAI GWGCWC 1 cut(s) 316
BsiHKCI CYCGRG 1 cut(s) 452
BslI CCNNNNNNNGG 5 cut(s) 426, 967, 1099, 1490, 1654
BsmAI GTCTC 4 cut(s) 287, 345, 449, 1638
BsmBI CGTCTC 1 cut(s) 345
BsmI GAATGC 1 cut(s) 384
BsnI GGCC 3 cut(s) 1026, 1144, 1222
Bso31I GGTCTC 3 cut(s) 287, 449, 1638
BsoBI CYCGRG 1 cut(s) 452
Bsp1286I GDGCHC 2 cut(s) 316, 587
Bsp143I GATC 5 cut(s) 649, 829, 1123, 1390, 1501
BspACI CCGC 1 cut(s) 1419
BspANI GGCC 3 cut(s) 1026, 1144, 1222
BspCNI CTCAG 2 cut(s) 139, 1415
BspLI GGNNCC 3 cut(s) 261, 1206, 1588
BspMI ACCTGC 1 cut(s) 811
BspOI GCTAGC 1 cut(s) 1467
BspPI GGATC 3 cut(s) 644, 837, 1398
BspTNI GGTCTC 3 cut(s) 287, 449, 1638
BsrDI GCAATG 2 cut(s) 224, 948
BsrI ACTGG 4 cut(s) 254, 607, 1027, 1094
BssECI CCNNGG 2 cut(s) 734, 1208
BssMI GATC 5 cut(s) 649, 829, 1123, 1390, 1501
Bst2UI CCWGG 1 cut(s) 1209
Bst4CI ACNGT 3 cut(s) 296, 1337, 1670
Bst6I CTCTTC 4 cut(s) 717, 743, 749, 1227
BstAPI GCANNNNNTGC 1 cut(s) 1541
BstC8I GCNNGC 3 cut(s) 212, 1053, 1465
BstDEI CTNAG 3 cut(s) 147, 388, 1402
BstEII GGTNACC 1 cut(s) 32
BstENI CCTNNNNNAGG 1 cut(s) 1652
BstF5I GGATG 4 cut(s) 175, 1477, 1681, 1696
BstH2I RGCGCY 1 cut(s) 327
BstHHI GCGC 1 cut(s) 326
BstKTI GATC 5 cut(s) 652, 832, 1126, 1393, 1504
BstMAI GTCTC 4 cut(s) 287, 345, 449, 1638
BstMBI GATC 5 cut(s) 649, 829, 1123, 1390, 1501
BstMWI GCNNNNNNNGC 5 cut(s) 148, 253, 677, 1520, 1541
BstNI CCWGG 1 cut(s) 1209
BstPI GGTNACC 1 cut(s) 32
BstSCI CCNGG 1 cut(s) 1207
BstSFI CTRYAG 1 cut(s) 547
BstV1I GCAGC 7 cut(s) 154, 241, 244, 265, 455, 892, 1081
BstV2I GAAGAC 2 cut(s) 720, 1428
BstX2I RGATCY 1 cut(s) 1501
BstXI CCANNNNNNTGG 1 cut(s) 1597
BstYI RGATCY 1 cut(s) 1501
BsuRI GGCC 3 cut(s) 1026, 1144, 1222
BtsCI GGATG 4 cut(s) 175, 1477, 1681, 1696
BtsIMutI CAGTG 8 cut(s) 247, 301, 600, 795, 1020, 1101, 1246, 1342
BveI ACCTGC 1 cut(s) 811
Cac8I GCNNGC 3 cut(s) 212, 1053, 1465
CaiI CAGNNNCTG 1 cut(s) 973
CfoI GCGC 1 cut(s) 326
Cfr13I GGNCC 3 cut(s) 260, 1220, 1587
CseI GACGC 1 cut(s) 1337
Csp6I GTAC 2 cut(s) 1315, 1399
CviAII CATG 7 cut(s) 85, 413, 421, 656, 909, 962, 1468
CviQI GTAC 2 cut(s) 1315, 1399
DdeI CTNAG 3 cut(s) 147, 388, 1402
DpnI GATC 5 cut(s) 651, 831, 1125, 1392, 1503
DpnII GATC 5 cut(s) 649, 829, 1123, 1390, 1501
DraI TTTAAA 1 cut(s) 1083
EaeI YGGCCR 1 cut(s) 1024
Eam1104I CTCTTC 4 cut(s) 717, 743, 749, 1227
EarI CTCTTC 4 cut(s) 717, 743, 749, 1227
Eco24I GRGCYC 1 cut(s) 587
Eco31I GGTCTC 3 cut(s) 287, 449, 1638
Eco47I GGWCC 2 cut(s) 260, 1587
Eco57I CTGAAG 2 cut(s) 353, 1443
Eco88I CYCGRG 1 cut(s) 452
Eco91I GGTNACC 1 cut(s) 32
EcoNI CCTNNNNNAGG 1 cut(s) 1652
EcoO109I RGGNCCY 2 cut(s) 260, 1220
EcoO65I GGTNACC 1 cut(s) 32
EcoRII CCWGG 1 cut(s) 1207
EcoT22I ATGCAT 1 cut(s) 384
EcoT38I GRGCYC 1 cut(s) 587
Esp3I CGTCTC 1 cut(s) 345
FaeI CATG 7 cut(s) 88, 416, 424, 659, 912, 965, 1471
FalI AAGNNNNNCTT 4 cut(s) 828, 860, 1632, 1664
FatI CATG 7 cut(s) 84, 412, 420, 655, 908, 961, 1467
FbaI TGATCA 1 cut(s) 1123
FblI GTMKAC 1 cut(s) 627
Fnu4HI GCNGC 7 cut(s) 143, 230, 233, 254, 444, 906, 1070
FokI GGATG 4 cut(s) 162, 1484, 1688, 1703
FriOI GRGCYC 1 cut(s) 587
Fsp4HI GCNGC 7 cut(s) 143, 230, 233, 254, 444, 906, 1070
FspBI CTAG 4 cut(s) 1172, 1449, 1464, 1557
GlaI GCGC 1 cut(s) 325
GluI GCNGC 7 cut(s) 143, 230, 233, 254, 444, 906, 1070
GsaI CCCAGC 1 cut(s) 260
HaeII RGCGCY 1 cut(s) 327
HaeIII GGCC 3 cut(s) 1026, 1144, 1222
HgaI GACGC 1 cut(s) 1337
HhaI GCGC 1 cut(s) 326
Hin1II CATG 7 cut(s) 88, 416, 424, 659, 912, 965, 1471
Hin6I GCGC 1 cut(s) 324
HinP1I GCGC 1 cut(s) 324
HindIII AAGCTT 1 cut(s) 275
HinfI GANTC 8 cut(s) 373, 393, 725, 841, 1032, 1168, 1190, 1718
HphI GGTGA 8 cut(s) 63, 158, 542, 617, 824, 826, 1225, 1408
Hpy166II GTNNAC 1 cut(s) 628
Hpy188I TCNGA 8 cut(s) 25, 99, 372, 706, 719, 1501, 1579, 1723
Hpy188III TCNNGA 5 cut(s) 437, 452, 920, 1202, 1404
Hpy8I GTNNAC 1 cut(s) 628
HpyCH4III ACNGT 3 cut(s) 296, 1337, 1670
HpyCH4IV ACGT 1 cut(s) 1686
HpyF10VI GCNNNNNNNGC 5 cut(s) 148, 253, 677, 1520, 1541
HpyF3I CTNAG 3 cut(s) 147, 388, 1402
HpySE526I ACGT 1 cut(s) 1686
Hsp92II CATG 7 cut(s) 88, 416, 424, 659, 912, 965, 1471
HspAI GCGC 1 cut(s) 324
Ksp22I TGATCA 1 cut(s) 1123
Kzo9I GATC 5 cut(s) 649, 829, 1123, 1390, 1501
LmnI GCTCC 1 cut(s) 676
Lsp1109I GCAGC 7 cut(s) 154, 241, 244, 265, 455, 892, 1081
LweI GCATC 2 cut(s) 223, 430
MaeI CTAG 4 cut(s) 1172, 1449, 1464, 1557
MaeII ACGT 1 cut(s) 1686
MaeIII GTNAC 3 cut(s) 32, 164, 1451
MalI GATC 5 cut(s) 651, 831, 1125, 1392, 1503
MboI GATC 5 cut(s) 649, 829, 1123, 1390, 1501
MflI RGATCY 1 cut(s) 1501
MhlI GDGCHC 2 cut(s) 316, 587
MlsI TGGCCA 1 cut(s) 1026
MluNI TGGCCA 1 cut(s) 1026
MlyI GAGTC 3 cut(s) 382, 734, 1041
MmeI TCCRAC 4 cut(s) 684, 698, 1368, 1578
Mox20I TGGCCA 1 cut(s) 1026
Mph1103I ATGCAT 1 cut(s) 384
MscI TGGCCA 1 cut(s) 1026
MseI TTAA 5 cut(s) 782, 1082, 1158, 1247, 1380
Msp20I TGGCCA 1 cut(s) 1026
MspA1I CMGCKG 2 cut(s) 256, 1396
MspR9I CCNGG 1 cut(s) 1209
Mva1269I GAATGC 1 cut(s) 384
MvaI CCWGG 1 cut(s) 1209
MwoI GCNNNNNNNGC 5 cut(s) 148, 253, 677, 1520, 1541
NdeII GATC 5 cut(s) 649, 829, 1123, 1390, 1501
NheI GCTAGC 1 cut(s) 1463
NlaIII CATG 7 cut(s) 88, 416, 424, 659, 912, 965, 1471
NlaIV GGNNCC 3 cut(s) 261, 1206, 1588
NmeAIII GCCGAG 1 cut(s) 759
NmuCI GTSAC 1 cut(s) 164
NsiI ATGCAT 1 cut(s) 384
PctI GAATGC 1 cut(s) 384
PfeI GAWTC 5 cut(s) 393, 841, 1168, 1190, 1718
PflMI CCANNNNNTGG 1 cut(s) 426
PkrI GCNGC 7 cut(s) 144, 231, 234, 255, 445, 907, 1071
PleI GAGTC 3 cut(s) 381, 733, 1040
PpsI GAGTC 3 cut(s) 381, 733, 1040
PpuMI RGGWCCY 1 cut(s) 260
Psp5II RGGWCCY 1 cut(s) 260
Psp6I CCWGG 1 cut(s) 1207
PspEI GGTNACC 1 cut(s) 32
PspFI CCCAGC 1 cut(s) 256
PspGI CCWGG 1 cut(s) 1207
PspN4I GGNNCC 3 cut(s) 261, 1206, 1588
PspPI GGNCC 3 cut(s) 260, 1220, 1587
PspPPI RGGWCCY 1 cut(s) 260
PstNI CAGNNNCTG 1 cut(s) 973
PsuI RGATCY 1 cut(s) 1501
PvuII CAGCTG 2 cut(s) 256, 1396
RsaI GTAC 2 cut(s) 1316, 1400
RsaNI GTAC 2 cut(s) 1315, 1399
SaqAI TTAA 5 cut(s) 782, 1082, 1158, 1247, 1380
SatI GCNGC 7 cut(s) 143, 230, 233, 254, 444, 906, 1070
Sau3AI GATC 5 cut(s) 649, 829, 1123, 1390, 1501
Sau96I GGNCC 3 cut(s) 260, 1220, 1587
ScaI AGTACT 1 cut(s) 1316
SchI GAGTC 3 cut(s) 382, 734, 1041
ScrFI CCNGG 1 cut(s) 1209
SduI GDGCHC 2 cut(s) 316, 587
SfaNI GCATC 2 cut(s) 223, 430
SfcI CTRYAG 1 cut(s) 547
SinI GGWCC 2 cut(s) 260, 1587
SmiI ATTTAAAT 1 cut(s) 1083
SmlI CTYRAG 2 cut(s) 137, 681
SmoI CTYRAG 2 cut(s) 137, 681
SsiI CCGC 1 cut(s) 1419
SspMI CTAG 4 cut(s) 1172, 1449, 1464, 1557
StyD4I CCNGG 1 cut(s) 1207
SwaI ATTTAAAT 1 cut(s) 1083
TaaI ACNGT 3 cut(s) 296, 1337, 1670
TaiI ACGT 1 cut(s) 1689
TaqI TCGA 3 cut(s) 361, 376, 438
TatI WGTACW 2 cut(s) 1314, 1398
TfiI GAWTC 5 cut(s) 393, 841, 1168, 1190, 1718
Tru1I TTAA 5 cut(s) 782, 1082, 1158, 1247, 1380
Tru9I TTAA 5 cut(s) 782, 1082, 1158, 1247, 1380
TscAI CASTG 8 cut(s) 254, 301, 607, 795, 1027, 1101, 1246, 1342
TseFI GTSAC 1 cut(s) 164
TseI GCWGC 7 cut(s) 142, 229, 232, 253, 443, 905, 1069
Tsp45I GTSAC 1 cut(s) 164
TspGWI ACGGA 1 cut(s) 1712
TspRI CASTG 8 cut(s) 254, 301, 607, 795, 1027, 1101, 1246, 1342
Van91I CCANNNNNTGG 1 cut(s) 426
VpaK11BI GGWCC 2 cut(s) 260, 1587
XagI CCTNNNNNAGG 1 cut(s) 1652
XapI RAATTY 1 cut(s) 268
XmiI GTMKAC 1 cut(s) 627
XspI CTAG 4 cut(s) 1172, 1449, 1464, 1557
ZrmI AGTACT 1 cut(s) 1316
Zsp2I ATGCAT 1 cut(s) 384
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.