FvH4_2g31050
MYB Family

Trihelix transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0015554
Physical Location & Seq
Forward (+)
23892834 .. 23895229
2396 bp
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UTR
Exon/CDS
Intron
FvH4_2g31050.t1

Sequence Viewer

Length: 1689 bp
ATGCAGTCTAATTTTGAAACAGCAGACCTCCCTTCTCAGCAACACTTCATGGACACCAACTCCTCCTCCCCTGTTTTCTTTAACCCCCAAAATCAAACCCACCCTAGTTTCCACCAACAACAGTTGAGTCATCACCTTGTTCATCCCATTCCCATTACCCATGAGTTGTTTCAAGGACTGCACCCACAGCCAGAACAAGAACACCAATCTGGAACAGCTCACTGGCAGATGAGTCCTTTAAATTTCAAGCTGGGTCTGAATGAGAACAGTGCCAGTGGTCAGGCTGCTTTGCTTGATCAAAACAACCCACTATTTCTTCAGAGCCGTCAACAAAATTTAGGCTTCAAAAGTTGGCAGCCTCAGGAATTTAGCACTAGGAAAGAACCCTTTTGGAAGCCCAATGAAACAGAAGGCATGAATCAGAAGCAAGAAATTCAAGGAGAGATGTGCAAGGAGTTGGAGGGCAAGTACAGGCTTTATGGTGAGCTTGAAGCAATTTATAGCCTTGCAAAGATTGGTGATGTTAATAATAGGCAAACTGGTTCTGGGTCAGCTCTGACTAATGAAAACTCCCCAAAGAATGTGGACCTTGTTACCCCTGTGCCTTTTGGTGGTTCTCATGGTCTCAATGCTGTCCCAGCAGCTATAGATGGAGTTGATGACGGGTCAGAAGCCTCCATTGAAGAAGAGGTTTCGTATAGGAATGTTCAGAAGAGGAAGAGGAAGAGGAGAATGAAGGAGCAAATGAGTTCATCGACGGCGCGATTTTTCGAGGGGTTAGTGAAGCGTGTGATGGATCACCAAGAGAGTCTGCACAACAGGTACTTGGCATTGATTGAGAAAATGGACAGGGAGAGGAGGGAGAGAGAAGCGGCGTGGAGAATGCAAGAGGCTGAGAAGCATAAGAGAGCAGCCATTGCCCAACTCCATGAACAGGCTCTAGCTTCAAAGAGAGAGTCACTCATTCTTTCATACATTGAGAAAATCACAGGCCGAAAGGTCAACATTCCTTGTAGGGAAATACCATCATTGTTGCAATGTGATTATTCAAATGGAGCTAGGGAGGGGGAGTTGACACCGGCCAAAGCTGATCATGAGACAAATAGCAGATGGCCTCAGAGTGAAGTTGAGGCCTTGATTCTAGTGAGAAGTAATATAGAACCCAAGTTTCAGGAGCCAGGGCATAAAGGGCCTCTTTGGGAACAGGTTAGTGCTTCAATGGCTTCGTTGGGTTATCAGAGGAGTGGAAAGAGGTGCAAAGAGAAGTGGGAGAACATCAATAAGTACTTTAGGAAAACCAAAGATAGCCCAAAAAAACGTTCTCAGCAGTCCAAAACTTGCTCTTATTTTAATCAGTTGGATCAGTTGTATTCTAGAACACCAATCACCAATCCCCCATCATCTTCTTATTGTTCTAGCAACCCTGCAGTTAGCATCGAAAGGCAAGGTTACTCGGAGCTTTTACAAGCTGTTATTACAGGGAGTGACACAGGAGTTTCAGAAAACCTTTCTAGTGGGAACTTTGAATTACTCTCTGAAATGGGGTCCAATAGGTTGGATTTTGATGGCTTTACTAATGGTAAGGTAGAACATTTGCGAGAAAACCATGGAAGGGAGATGGAAAACCATGAGGATGATGGAAGCATGGAAGAAGAGGAAGACATTCATGGTGATGATTCTGATGAGTAG

Protein Analysis

563

Amino Acids

63.95

Weight (kDa)

5.83

Isoelectric Point (pI)

57.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_4 PF13837 369 - 456 1.7e-23 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015554)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g31050
malus_domestica MD08G1071000.v1.1 MD15G1050800.v1.1
prunus_persica Prupe.1G405000_v2.0.a1 Prupe.1G405000_v2.0.a1 Prupe.1G405000_v2.0.a1
pyrus_communis pycom08g05880
rosa_chinensis RchiOBHm_Chr6g0311751
rosa_laevigata RLG00000010377
rosa_multiflora Rmu_sc0002888.1_g000038
rosa_roxburghii Rroxscaffold_7G00157340
rosa_samantha Rh6AG506800 Rh6BG517400 Rh6CG523200 Rh6DG509000
rosa_wichuraiana Rw6G044080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 763
AciI CCGC 1 cut(s) 872
AclI AACGTT 1 cut(s) 1318
AclWI GGATC 2 cut(s) 804, 1368
AcoI YGGCCR 1 cut(s) 1080
AcsI RAATTY 4 cut(s) 241, 334, 365, 432
AcuI CTGAAG 1 cut(s) 302
AfaI GTAC 3 cut(s) 470, 824, 1286
AfiI CCNNNNNNNGG 3 cut(s) 611, 934, 1612
AjnI CCWGG 1 cut(s) 1177
AjuI GAANNNNNNNTTGG 2 cut(s) 1303, 1335
Alw26I GTCTC 2 cut(s) 629, 1091
AlwI GGATC 2 cut(s) 804, 1368
AoxI GGCC 5 cut(s) 991, 1080, 1112, 1131, 1190
ApeKI GCWGC 4 cut(s) 284, 355, 641, 911
ApoI RAATTY 4 cut(s) 241, 334, 365, 432
ArsI GACNNNNNNTTYG 2 cut(s) 941, 973
Asp700I GAANNNNTTC 1 cut(s) 1662
AspLEI GCGC 1 cut(s) 763
AspS9I GGNCC 3 cut(s) 586, 1190, 1545
AsuHPI GGTGA 6 cut(s) 125, 494, 530, 791, 1378, 1682
AvaII GGWCC 2 cut(s) 586, 1545
AxyI CCTNAGG 1 cut(s) 360
BbsI GAAGAC 1 cut(s) 1665
BbvI GCAGC 4 cut(s) 271, 367, 653, 923
BccI CCATC 8 cut(s) 644, 787, 1033, 1104, 1405, 1559, 1612, 1631
BceAI ACGGC 2 cut(s) 309, 774
BciT130I CCWGG 1 cut(s) 1179
BclI TGATCA 2 cut(s) 295, 1090
BcoDI GTCTC 2 cut(s) 629, 1091
BfaI CTAG 8 cut(s) 105, 375, 941, 1059, 1142, 1374, 1416, 1512
BfmI CTRYAG 2 cut(s) 645, 1425
BisI GCNGC 5 cut(s) 285, 356, 642, 873, 912
BlsI GCNGC 5 cut(s) 286, 357, 643, 874, 913
BmcAI AGTACT 1 cut(s) 1286
Bme1390I CCNGG 1 cut(s) 1179
Bme18I GGWCC 2 cut(s) 586, 1545
BmgT120I GGNCC 3 cut(s) 586, 1190, 1545
BmiI GGNNCC 2 cut(s) 1176, 1546
BmrFI CCNGG 1 cut(s) 1179
BmsI GCATC 1 cut(s) 1443
BpiI GAAGAC 1 cut(s) 1665
BplI GAGNNNNNCTC 2 cut(s) 945, 977
BsaI GGTCTC 1 cut(s) 629
BsaJI CCNNGG 2 cut(s) 1178, 1606
BsaXI ACNNNNNCTCC 8 cut(s) 44, 50, 74, 80, 452, 482, 1055, 1085
Bsc4I CCNNNNNNNGG 3 cut(s) 611, 934, 1612
Bse118I RCCGGY 1 cut(s) 1078
Bse1I ACTGG 3 cut(s) 227, 273, 544
Bse21I CCTNAGG 1 cut(s) 360
Bse3DI GCAATG 2 cut(s) 915, 1043
BseBI CCWGG 1 cut(s) 1179
BseDI CCNNGG 2 cut(s) 1178, 1606
BseGI GGATG 2 cut(s) 142, 1639
BseLI CCNNNNNNNGG 3 cut(s) 611, 934, 1612
BseMI GCAATG 2 cut(s) 915, 1043
BseMII CTCAG 5 cut(s) 50, 374, 885, 1130, 1337
BseNI ACTGG 3 cut(s) 227, 273, 544
BseRI GAGGAG 5 cut(s) 52, 55, 742, 871, 1255
BseXI GCAGC 4 cut(s) 271, 367, 653, 923
BseYI CCCAGC 2 cut(s) 250, 637
BsgI GTGCAG 2 cut(s) 164, 797
Bsh1236I CGCG 1 cut(s) 763
BshFI GGCC 5 cut(s) 993, 1082, 1114, 1133, 1192
BsiSI CCGG 1 cut(s) 1079
BslFI GGGAC 1 cut(s) 620
BslI CCNNNNNNNGG 3 cut(s) 611, 934, 1612
BsmAI GTCTC 2 cut(s) 629, 1091
BsmFI GGGAC 1 cut(s) 620
BsmI GAATGC 1 cut(s) 888
BsnI GGCC 5 cut(s) 993, 1082, 1114, 1133, 1192
Bso31I GGTCTC 1 cut(s) 629
Bsp143I GATC 4 cut(s) 295, 796, 1090, 1360
Bsp19I CCATGG 1 cut(s) 1606
BspACI CCGC 1 cut(s) 872
BspANI GGCC 5 cut(s) 993, 1082, 1114, 1133, 1192
BspCNI CTCAG 5 cut(s) 49, 373, 886, 1129, 1336
BspFNI CGCG 1 cut(s) 763
BspHI TCATGA 1 cut(s) 1093
BspLI GGNNCC 2 cut(s) 1176, 1546
BspMAI CTGCAG 1 cut(s) 1429
BspPI GGATC 2 cut(s) 804, 1368
BspTNI GGTCTC 1 cut(s) 629
BsrDI GCAATG 2 cut(s) 915, 1043
BsrFI RCCGGY 1 cut(s) 1078
BsrI ACTGG 3 cut(s) 227, 273, 544
BssAI RCCGGY 1 cut(s) 1078
BssECI CCNNGG 2 cut(s) 1178, 1606
BssMI GATC 4 cut(s) 295, 796, 1090, 1360
BssT1I CCWWGG 1 cut(s) 1606
Bst2UI CCWGG 1 cut(s) 1179
Bst4CI ACNGT 2 cut(s) 123, 269
Bst6I CTCTTC 5 cut(s) 681, 707, 713, 719, 1647
BstAPI GCANNNNNTGC 1 cut(s) 917
BstDEI CTNAG 5 cut(s) 36, 360, 894, 1116, 1323
BstDSI CCRYGG 1 cut(s) 1606
BstF5I GGATG 2 cut(s) 142, 1639
BstFNI CGCG 1 cut(s) 763
BstHHI GCGC 1 cut(s) 763
BstKTI GATC 4 cut(s) 298, 799, 1093, 1363
BstMAI GTCTC 2 cut(s) 629, 1091
BstMBI GATC 4 cut(s) 295, 796, 1090, 1360
BstMWI GCNNNNNNNGC 5 cut(s) 187, 638, 917, 1189, 1220
BstNI CCWGG 1 cut(s) 1179
BstSCI CCNGG 1 cut(s) 1177
BstSFI CTRYAG 2 cut(s) 645, 1425
BstUI CGCG 1 cut(s) 763
BstV1I GCAGC 4 cut(s) 271, 367, 653, 923
BstV2I GAAGAC 1 cut(s) 1665
BstXI CCANNNNNNTGG 1 cut(s) 1555
Bsu36I CCTNAGG 1 cut(s) 360
BsuRI GGCC 5 cut(s) 993, 1082, 1114, 1133, 1192
BtgI CCRYGG 1 cut(s) 1606
BtsCI GGATG 2 cut(s) 142, 1639
BtsIMutI CAGTG 3 cut(s) 220, 274, 280
CciI TCATGA 1 cut(s) 1093
CfoI GCGC 1 cut(s) 763
Cfr10I RCCGGY 1 cut(s) 1078
Cfr13I GGNCC 3 cut(s) 586, 1190, 1545
Csp6I GTAC 3 cut(s) 469, 823, 1285
CspCI CAANNNNNGTGG 2 cut(s) 564, 599
CviQI GTAC 3 cut(s) 469, 823, 1285
DdeI CTNAG 5 cut(s) 36, 360, 894, 1116, 1323
DpnI GATC 4 cut(s) 297, 798, 1092, 1362
DpnII GATC 4 cut(s) 295, 796, 1090, 1360
DraI TTTAAA 1 cut(s) 240
EaeI YGGCCR 1 cut(s) 1080
Eam1104I CTCTTC 5 cut(s) 681, 707, 713, 719, 1647
EarI CTCTTC 5 cut(s) 681, 707, 713, 719, 1647
Eco130I CCWWGG 1 cut(s) 1606
Eco147I AGGCCT 1 cut(s) 1133
Eco31I GGTCTC 1 cut(s) 629
Eco47I GGWCC 2 cut(s) 586, 1545
Eco57I CTGAAG 1 cut(s) 302
Eco81I CCTNAGG 1 cut(s) 360
EcoO109I RGGNCCY 1 cut(s) 1190
EcoRII CCWGG 1 cut(s) 1177
EcoT14I CCWWGG 1 cut(s) 1606
ErhI CCWWGG 1 cut(s) 1606
FalI AAGNNNNNCTT 2 cut(s) 1179, 1211
FaqI GGGAC 1 cut(s) 620
FbaI TGATCA 2 cut(s) 295, 1090
Fnu4HI GCNGC 5 cut(s) 285, 356, 642, 873, 912
FokI GGATG 2 cut(s) 129, 1646
Fsp4HI GCNGC 5 cut(s) 285, 356, 642, 873, 912
FspBI CTAG 8 cut(s) 105, 375, 941, 1059, 1142, 1374, 1416, 1512
GlaI GCGC 1 cut(s) 762
GluI GCNGC 5 cut(s) 285, 356, 642, 873, 912
GsaI CCCAGC 2 cut(s) 254, 641
HaeIII GGCC 5 cut(s) 993, 1082, 1114, 1133, 1192
HapII CCGG 1 cut(s) 1079
HhaI GCGC 1 cut(s) 763
Hin6I GCGC 1 cut(s) 761
HinP1I GCGC 1 cut(s) 761
HincII GTYRAC 3 cut(s) 329, 1003, 1074
HindII GTYRAC 3 cut(s) 329, 1003, 1074
HinfI GANTC 7 cut(s) 127, 232, 418, 808, 956, 1138, 1676
HpaII CCGG 1 cut(s) 1079
HphI GGTGA 6 cut(s) 125, 494, 530, 791, 1378, 1682
Hpy166II GTNNAC 4 cut(s) 329, 586, 1003, 1074
Hpy188III TCNNGA 5 cut(s) 210, 362, 1094, 1172, 1374
Hpy8I GTNNAC 4 cut(s) 329, 586, 1003, 1074
Hpy99I CGWCG 1 cut(s) 760
HpyAV CCTTC 4 cut(s) 42, 404, 730, 1605
HpyCH4III ACNGT 2 cut(s) 123, 269
HpyCH4IV ACGT 1 cut(s) 1318
HpyCH4V TGCA 9 cut(s) 4, 181, 450, 509, 814, 886, 1036, 1257, 1427
HpyF10VI GCNNNNNNNGC 5 cut(s) 187, 638, 917, 1189, 1220
HpyF3I CTNAG 5 cut(s) 36, 360, 894, 1116, 1323
HpySE526I ACGT 1 cut(s) 1318
HspAI GCGC 1 cut(s) 761
Ksp22I TGATCA 2 cut(s) 295, 1090
Kzo9I GATC 4 cut(s) 295, 796, 1090, 1360
LmnI GCTCC 4 cut(s) 739, 1055, 1174, 1456
Lsp1109I GCAGC 4 cut(s) 271, 367, 653, 923
LweI GCATC 1 cut(s) 1443
MaeI CTAG 8 cut(s) 105, 375, 941, 1059, 1142, 1374, 1416, 1512
MaeII ACGT 1 cut(s) 1318
MaeIII GTNAC 4 cut(s) 592, 957, 1448, 1484
MalI GATC 4 cut(s) 297, 798, 1092, 1362
MboI GATC 4 cut(s) 295, 796, 1090, 1360
MluCI AATT 7 cut(s) 10, 241, 334, 365, 432, 495, 1526
MlyI GAGTC 4 cut(s) 136, 241, 817, 965
MmeI TCCRAC 3 cut(s) 438, 1338, 1536
MroXI GAANNNNTTC 1 cut(s) 1662
MseI TTAA 4 cut(s) 81, 239, 525, 1350
MslI CAYNNNNRTG 2 cut(s) 1632, 1671
MspI CCGG 1 cut(s) 1079
MspR9I CCNGG 1 cut(s) 1179
Mva1269I GAATGC 1 cut(s) 888
MvaI CCWGG 1 cut(s) 1179
MvnI CGCG 1 cut(s) 763
MwoI GCNNNNNNNGC 5 cut(s) 187, 638, 917, 1189, 1220
NcoI CCATGG 1 cut(s) 1606
NdeII GATC 4 cut(s) 295, 796, 1090, 1360
NlaIV GGNNCC 2 cut(s) 1176, 1546
NmuCI GTSAC 2 cut(s) 957, 1484
PagI TCATGA 1 cut(s) 1093
PceI AGGCCT 1 cut(s) 1133
PctI GAATGC 1 cut(s) 888
PdmI GAANNNNTTC 1 cut(s) 1662
PfeI GAWTC 3 cut(s) 418, 1138, 1676
PkrI GCNGC 5 cut(s) 286, 357, 643, 874, 913
PleI GAGTC 4 cut(s) 135, 240, 816, 964
PpsI GAGTC 4 cut(s) 135, 240, 816, 964
Psp1406I AACGTT 1 cut(s) 1318
Psp6I CCWGG 1 cut(s) 1177
PspFI CCCAGC 2 cut(s) 250, 637
PspGI CCWGG 1 cut(s) 1177
PspN4I GGNNCC 2 cut(s) 1176, 1546
PspPI GGNCC 3 cut(s) 586, 1190, 1545
PstI CTGCAG 1 cut(s) 1429
RsaI GTAC 3 cut(s) 470, 824, 1286
RsaNI GTAC 3 cut(s) 469, 823, 1285
RseI CAYNNNNRTG 2 cut(s) 1632, 1671
SaqAI TTAA 4 cut(s) 81, 239, 525, 1350
SatI GCNGC 5 cut(s) 285, 356, 642, 873, 912
Sau3AI GATC 4 cut(s) 295, 796, 1090, 1360
Sau96I GGNCC 3 cut(s) 586, 1190, 1545
ScaI AGTACT 1 cut(s) 1286
SchI GAGTC 4 cut(s) 136, 241, 817, 965
ScrFI CCNGG 1 cut(s) 1179
SfaNI GCATC 1 cut(s) 1443
SfcI CTRYAG 2 cut(s) 645, 1425
SinI GGWCC 2 cut(s) 586, 1545
SmiMI CAYNNNNRTG 2 cut(s) 1632, 1671
Sse9I AATT 7 cut(s) 10, 241, 334, 365, 432, 495, 1526
SseBI AGGCCT 1 cut(s) 1133
SsiI CCGC 1 cut(s) 872
SspMI CTAG 8 cut(s) 105, 375, 941, 1059, 1142, 1374, 1416, 1512
StuI AGGCCT 1 cut(s) 1133
StyD4I CCNGG 1 cut(s) 1177
StyI CCWWGG 1 cut(s) 1606
TaaI ACNGT 2 cut(s) 123, 269
TaiI ACGT 1 cut(s) 1321
TaqI TCGA 3 cut(s) 755, 771, 1437
TasI AATT 7 cut(s) 10, 241, 334, 365, 432, 495, 1526
TatI WGTACW 2 cut(s) 468, 1284
TauI GCSGC 1 cut(s) 875
TfiI GAWTC 3 cut(s) 418, 1138, 1676
Tru1I TTAA 4 cut(s) 81, 239, 525, 1350
Tru9I TTAA 4 cut(s) 81, 239, 525, 1350
TscAI CASTG 3 cut(s) 227, 274, 280
TseFI GTSAC 2 cut(s) 957, 1484
TseI GCWGC 4 cut(s) 284, 355, 641, 911
Tsp45I GTSAC 2 cut(s) 957, 1484
TspRI CASTG 3 cut(s) 227, 274, 280
VpaK11BI GGWCC 2 cut(s) 586, 1545
XapI RAATTY 4 cut(s) 241, 334, 365, 432
XbaI TCTAGA 1 cut(s) 1373
XcmI CCANNNNNNNNNTGG 1 cut(s) 1634
XmnI GAANNNNTTC 1 cut(s) 1662
XspI CTAG 8 cut(s) 105, 375, 941, 1059, 1142, 1374, 1416, 1512
ZrmI AGTACT 1 cut(s) 1286
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.