Rroxscaffold_7G00157340
MYB Family

Trihelix transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0015554
Physical Location & Seq
Forward (+)
1136105 .. 1138150
2046 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00157340.1

Sequence Viewer

Length: 1695 bp
ATGCAGTCTAATTTTGAAATAGCAGACCTCCCTTCTCAGCAACACTTCATGGACACCAACTCTTCCTCACCTGTTTTGCCCATTTTCTTTAATCCCCAAAATCAAAACCACCCCAGTTTCCACCGACAACTTGAGCACCAACAGTTGAGTCATCACCACCACCTTGTTCATCCCATTCCCATTACCCATGAGTTGTTTCAAGGATTACACCCACAACCAGAACAAGAGCAATCTGGAACACTGCATTGGCAGATGAGTCCTATAAATTTCAAGCTGGGTCTGAATGAGAACAGTGCCAGTGGTGAGGTTGCTCTGCTTGATGAAAACAGCCCTCTATTTCTTCAGAGCCGCCCACAAAATTTGGGTTTCAAAAGTTGGCAACCCCAGGAATTTAGCACTAGAAAAGAACCCTTTTGGAAGCCACATGAAACAGAAGGCATGAAGCAGAAGCAAGCAACTGAAGGAGAGATATGCAAGGAATTGGAGAGCAAATACAGGCTTTATGGTGAGCTTGAAGCAATTTATAGTCTTGGAAAGATTGGTGAGGTTAATAATAAGCAAACTGGTTCTGGGTCAGCTCTGACTAATGAAAACTCTCCCAAGAATGTGGACCTTGTTCCTGTGCCTTTTGGTGGTTCTCATGGCCTCAATGGTGGCCCAGCAGCTACAGCTCGAGTTGATGATGGGTCAGAAGCCTCCATTGAAGAAGAAGTTTCGTATAGGAAGGTTCAGAAGAGGAAGAGAAAGAGGAGGATGAAGGAGCAATTGAGTTCATCAACGACTCGATTTTTCGAGGGGTTAGTGAAGCGTGTGATGGATCACCAAGAGAGCCTGCACCACAAGTACTTGGCATTGATTGAGAAAATGGACAGAGAGAGGAGGGAGAGAGAAGCGGCGTGGAGACTTCAAGAGGCTGAGAAGCATAAGAGAAAAGCCGTTGCCCAACTCCATGAACAGGCTCTAGCTTCGAAGAGAGAGTCGCTGATTGTTTCATACATTGAGAAAATCACAGGCCAAAAGGTCAACATTCCTTCTAGGGAAACCCCATCATTGTTGCAATGTGATTATTCAAATGGAGCTATGGAGGAGGAGTTGACGCCAGTCAAAGTTGATCAGACAAATAGCAGATGGCCTCAAAGTGAAGTTGAGGCTTTGATTCTAGTGAGAAGTAATATAGAATCCAAGTTTCAGGAGCCAGGGCTTAAAGGGCCTCTTTGGGAACAGGTGAGTGCTTCAATGGCTTCATTGGGTTATCAGAGGAGTGCAAAGAGGTGCAAAGAGAAGTGGGAGAACATCAACAAGTACTTCAGGAAAACCAAAGACAGCCCAAAAAAACGTCCTCAGCAGTCCAAAACTTGCTCTTATTTTAATAAGTTGGATCAGCTGTACTCTAGAACACCAATCACCAATCCCTCATCATCTTCGTATTGTTCTAGCAACCCTGTGGTTAGCATTGAAAGGCAAGGTTACTCGGAGCTTTTACAAGCGGTTCTTGATGGGAGTGAAACTCAAAACCTATCTAGTGGGAACTTTGAAATACTCTCTGAAATAGGGTCCCATAGGTTGGATTTTGATGGCATTACTAATGGTAAGGTAGAGCATTTCCGAGAAGATCATGGGAAGGAGAAGGAAAACCATGAGGATGATGGAAGCATGGGAGAAGAAGACATTGATGGTAATGATTCTGATGAGTAG

Protein Analysis

564

Amino Acids

64.3

Weight (kDa)

6.12

Isoelectric Point (pI)

59.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_4 PF13837 375 - 462 1.2e-24 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015554)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g31050
malus_domestica MD08G1071000.v1.1 MD15G1050800.v1.1
prunus_persica Prupe.1G405000_v2.0.a1 Prupe.1G405000_v2.0.a1 Prupe.1G405000_v2.0.a1
pyrus_communis pycom08g05880
rosa_chinensis RchiOBHm_Chr6g0311751
rosa_laevigata RLG00000010377
rosa_multiflora Rmu_sc0002888.1_g000038
rosa_roxburghii Rroxscaffold_7G00157340
rosa_samantha Rh6AG506800 Rh6BG517400 Rh6CG523200 Rh6DG509000
rosa_wichuraiana Rw6G044080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1564
AciI CCGC 3 cut(s) 349, 893, 1487
AclWI GGATC 2 cut(s) 825, 1386
AcsI RAATTY 3 cut(s) 265, 358, 389
AcuI CTGAAG 3 cut(s) 326, 480, 1291
AcyI GRCGYC 1 cut(s) 1097
AfaI GTAC 3 cut(s) 845, 1304, 1388
AfiI CCNNNNNNNGG 3 cut(s) 632, 955, 1564
AjnI CCWGG 2 cut(s) 384, 1195
AjuI GAANNNNNNNTTGG 2 cut(s) 229, 261
AluBI AGCT 9 cut(s) 274, 511, 578, 665, 671, 965, 1079, 1384, 1477
AluI AGCT 9 cut(s) 274, 511, 578, 665, 671, 965, 1079, 1384, 1477
Alw21I GWGCWC 1 cut(s) 138
Alw26I GTCTC 1 cut(s) 895
AlwI GGATC 2 cut(s) 825, 1386
Ama87I CYCGRG 1 cut(s) 672
AoxI GGCC 5 cut(s) 643, 655, 1012, 1130, 1208
ApeKI GCWGC 1 cut(s) 662
ApoI RAATTY 3 cut(s) 265, 358, 389
ArsI GACNNNNNNTTYG 2 cut(s) 962, 994
AspS9I GGNCC 4 cut(s) 610, 656, 1208, 1554
AsuHPI GGTGA 8 cut(s) 60, 146, 314, 518, 554, 812, 1237, 1396
AsuII TTCGAA 1 cut(s) 968
AvaI CYCGRG 1 cut(s) 672
AvaII GGWCC 2 cut(s) 610, 1554
BbsI GAAGAC 1 cut(s) 1671
Bbv12I GWGCWC 1 cut(s) 138
BbvCI CCTCAGC 1 cut(s) 1341
BbvI GCAGC 1 cut(s) 674
BccI CCATC 8 cut(s) 677, 808, 1054, 1122, 1490, 1568, 1640, 1667
BceAI ACGGC 1 cut(s) 920
BciT130I CCWGG 2 cut(s) 386, 1197
BclI TGATCA 1 cut(s) 1111
BcoDI GTCTC 1 cut(s) 895
BfaI CTAG 7 cut(s) 399, 962, 1035, 1160, 1392, 1434, 1521
BfmI CTRYAG 1 cut(s) 666
BisI GCNGC 3 cut(s) 349, 663, 894
BlsI GCNGC 3 cut(s) 350, 664, 895
BmcAI AGTACT 2 cut(s) 845, 1304
Bme1390I CCNGG 2 cut(s) 386, 1197
Bme18I GGWCC 2 cut(s) 610, 1554
BmeT110I CYCGRG 1 cut(s) 672
BmgT120I GGNCC 4 cut(s) 610, 656, 1208, 1554
BmiI GGNNCC 3 cut(s) 1194, 1555, 1556
BmrFI CCNGG 2 cut(s) 386, 1197
BmrI ACTGGG 1 cut(s) 108
BmuI ACTGGG 1 cut(s) 108
BoxI GACNNNNGTC 1 cut(s) 1100
BpiI GAAGAC 1 cut(s) 1671
BplI GAGNNNNNCTC 2 cut(s) 1492, 1524
Bpu10I CCTNAGC 1 cut(s) 1341
Bpu14I TTCGAA 1 cut(s) 968
BpuEI CTTGAG 1 cut(s) 152
BsaHI GRCGYC 1 cut(s) 1097
BsaJI CCNNGG 2 cut(s) 384, 1196
BsaXI ACNNNNNCTCC 2 cut(s) 1076, 1106
Bsc4I CCNNNNNNNGG 3 cut(s) 632, 955, 1564
Bse1I ACTGG 4 cut(s) 114, 297, 568, 1100
Bse3DI GCAATG 1 cut(s) 1064
BseBI CCWGG 2 cut(s) 386, 1197
BseDI CCNNGG 2 cut(s) 384, 1196
BseGI GGATG 3 cut(s) 169, 759, 1648
BseLI CCNNNNNNNGG 3 cut(s) 632, 955, 1564
BseMI GCAATG 1 cut(s) 1064
BseMII CTCAG 3 cut(s) 50, 906, 1355
BseNI ACTGG 4 cut(s) 114, 297, 568, 1100
BseRI GAGGAG 5 cut(s) 763, 892, 1100, 1103, 1273
BseXI GCAGC 1 cut(s) 674
BseYI CCCAGC 2 cut(s) 274, 658
BsgI GTGCAG 1 cut(s) 818
BshFI GGCC 5 cut(s) 645, 657, 1014, 1132, 1210
BsiHKAI GWGCWC 1 cut(s) 138
BsiHKCI CYCGRG 1 cut(s) 672
BslFI GGGAC 1 cut(s) 1540
BslI CCNNNNNNNGG 3 cut(s) 632, 955, 1564
BsmAI GTCTC 1 cut(s) 895
BsmFI GGGAC 1 cut(s) 1540
BsnI GGCC 5 cut(s) 645, 657, 1014, 1132, 1210
BsoBI CYCGRG 1 cut(s) 672
Bsp119I TTCGAA 1 cut(s) 968
Bsp1286I GDGCHC 1 cut(s) 138
Bsp143I GATC 4 cut(s) 817, 1111, 1378, 1612
BspACI CCGC 3 cut(s) 349, 893, 1487
BspANI GGCC 5 cut(s) 645, 657, 1014, 1132, 1210
BspCNI CTCAG 3 cut(s) 49, 907, 1354
BspLI GGNNCC 3 cut(s) 1194, 1555, 1556
BspPI GGATC 2 cut(s) 825, 1386
BspT104I TTCGAA 1 cut(s) 968
BsrDI GCAATG 1 cut(s) 1064
BsrI ACTGG 4 cut(s) 114, 297, 568, 1100
BssECI CCNNGG 2 cut(s) 384, 1196
BssMI GATC 4 cut(s) 817, 1111, 1378, 1612
BssNI GRCGYC 1 cut(s) 1097
Bst2UI CCWGG 2 cut(s) 386, 1197
Bst4CI ACNGT 2 cut(s) 144, 293
Bst6I CTCTTC 4 cut(s) 67, 728, 734, 965
BstACI GRCGYC 1 cut(s) 1097
BstBI TTCGAA 1 cut(s) 968
BstC8I GCNNGC 2 cut(s) 453, 833
BstDEI CTNAG 3 cut(s) 36, 915, 1341
BstF5I GGATG 3 cut(s) 169, 759, 1648
BstKTI GATC 4 cut(s) 820, 1114, 1381, 1615
BstMAI GTCTC 1 cut(s) 895
BstMBI GATC 4 cut(s) 817, 1111, 1378, 1612
BstMWI GCNNNNNNNGC 3 cut(s) 668, 1207, 1238
BstNI CCWGG 2 cut(s) 386, 1197
BstPAI GACNNNNGTC 1 cut(s) 1100
BstSCI CCNGG 2 cut(s) 384, 1195
BstSFI CTRYAG 1 cut(s) 666
BstV1I GCAGC 1 cut(s) 674
BstV2I GAAGAC 1 cut(s) 1671
BstXI CCANNNNNNTGG 1 cut(s) 607
BsuRI GGCC 5 cut(s) 645, 657, 1014, 1132, 1210
BtsCI GGATG 3 cut(s) 169, 759, 1648
BtsI GCAGTG 1 cut(s) 239
BtsIMutI CAGTG 3 cut(s) 239, 298, 304
Cac8I GCNNGC 2 cut(s) 453, 833
Cfr13I GGNCC 4 cut(s) 610, 656, 1208, 1554
CseI GACGC 1 cut(s) 1105
Csp6I GTAC 3 cut(s) 844, 1303, 1387
CspCI CAANNNNNGTGG 2 cut(s) 342, 377
CviAII CATG 9 cut(s) 49, 188, 425, 439, 641, 950, 1616, 1637, 1654
CviQI GTAC 3 cut(s) 844, 1303, 1387
DdeI CTNAG 3 cut(s) 36, 915, 1341
DpnI GATC 4 cut(s) 819, 1113, 1380, 1614
DpnII GATC 4 cut(s) 817, 1111, 1378, 1612
Eam1104I CTCTTC 4 cut(s) 67, 728, 734, 965
EarI CTCTTC 4 cut(s) 67, 728, 734, 965
Eco47I GGWCC 2 cut(s) 610, 1554
Eco57I CTGAAG 3 cut(s) 326, 480, 1291
Eco88I CYCGRG 1 cut(s) 672
EcoO109I RGGNCCY 2 cut(s) 1208, 1554
EcoRII CCWGG 2 cut(s) 384, 1195
FaeI CATG 9 cut(s) 52, 191, 428, 442, 644, 953, 1619, 1640, 1657
FalI AAGNNNNNCTT 4 cut(s) 1197, 1229, 1476, 1508
FaqI GGGAC 1 cut(s) 1540
FatI CATG 9 cut(s) 48, 187, 424, 438, 640, 949, 1615, 1636, 1653
FbaI TGATCA 1 cut(s) 1111
Fnu4HI GCNGC 3 cut(s) 349, 663, 894
FokI GGATG 3 cut(s) 156, 766, 1655
Fsp4HI GCNGC 3 cut(s) 349, 663, 894
FspBI CTAG 7 cut(s) 399, 962, 1035, 1160, 1392, 1434, 1521
GluI GCNGC 3 cut(s) 349, 663, 894
GsaI CCCAGC 2 cut(s) 278, 662
HaeIII GGCC 5 cut(s) 645, 657, 1014, 1132, 1210
HgaI GACGC 1 cut(s) 1105
Hin1I GRCGYC 1 cut(s) 1097
Hin1II CATG 9 cut(s) 52, 191, 428, 442, 644, 953, 1619, 1640, 1657
HincII GTYRAC 2 cut(s) 1024, 1095
HindII GTYRAC 2 cut(s) 1024, 1095
HinfI GANTC 7 cut(s) 148, 256, 781, 977, 1156, 1178, 1682
HphI GGTGA 8 cut(s) 60, 146, 314, 518, 554, 812, 1237, 1396
Hpy166II GTNNAC 3 cut(s) 610, 1024, 1095
Hpy188III TCNNGA 6 cut(s) 234, 908, 1190, 1309, 1392, 1493
Hpy8I GTNNAC 3 cut(s) 610, 1024, 1095
HpyAV CCTTC 8 cut(s) 42, 428, 455, 718, 751, 1041, 1615, 1621
HpyCH4III ACNGT 2 cut(s) 144, 293
HpyCH4IV ACGT 1 cut(s) 1336
HpyCH4V TGCA 7 cut(s) 4, 244, 474, 835, 1057, 1265, 1275
HpyF10VI GCNNNNNNNGC 3 cut(s) 668, 1207, 1238
HpyF3I CTNAG 3 cut(s) 36, 915, 1341
HpySE526I ACGT 1 cut(s) 1336
Hsp92I GRCGYC 1 cut(s) 1097
Hsp92II CATG 9 cut(s) 52, 191, 428, 442, 644, 953, 1619, 1640, 1657
KflI GGGWCCC 1 cut(s) 1554
Ksp22I TGATCA 1 cut(s) 1111
Kzo9I GATC 4 cut(s) 817, 1111, 1378, 1612
LmnI GCTCC 4 cut(s) 760, 1076, 1192, 1474
Lsp1109I GCAGC 1 cut(s) 674
MaeI CTAG 7 cut(s) 399, 962, 1035, 1160, 1392, 1434, 1521
MaeII ACGT 1 cut(s) 1336
MaeIII GTNAC 1 cut(s) 1466
MalI GATC 4 cut(s) 819, 1113, 1380, 1614
MboI GATC 4 cut(s) 817, 1111, 1378, 1612
MfeI CAATTG 1 cut(s) 764
MhlI GDGCHC 1 cut(s) 138
MluCI AATT 7 cut(s) 10, 265, 358, 389, 479, 519, 764
MlyI GAGTC 4 cut(s) 157, 265, 775, 986
MmeI TCCRAC 2 cut(s) 1356, 1545
MseI TTAA 4 cut(s) 90, 549, 1203, 1368
MslI CAYNNNNRTG 1 cut(s) 1641
MspA1I CMGCKG 1 cut(s) 1384
MspR9I CCNGG 2 cut(s) 386, 1197
MunI CAATTG 1 cut(s) 764
MvaI CCWGG 2 cut(s) 386, 1197
MwoI GCNNNNNNNGC 3 cut(s) 668, 1207, 1238
NdeII GATC 4 cut(s) 817, 1111, 1378, 1612
NlaIII CATG 9 cut(s) 52, 191, 428, 442, 644, 953, 1619, 1640, 1657
NlaIV GGNNCC 3 cut(s) 1194, 1555, 1556
NspV TTCGAA 1 cut(s) 968
PaeR7I CTCGAG 1 cut(s) 672
PfeI GAWTC 3 cut(s) 1156, 1178, 1682
PflMI CCANNNNNTGG 1 cut(s) 1564
PkrI GCNGC 3 cut(s) 350, 664, 895
PleI GAGTC 4 cut(s) 156, 264, 775, 985
PpsI GAGTC 4 cut(s) 156, 264, 775, 985
PpuMI RGGWCCY 1 cut(s) 1554
PshAI GACNNNNGTC 1 cut(s) 1100
Psp5II RGGWCCY 1 cut(s) 1554
Psp6I CCWGG 2 cut(s) 384, 1195
PspFI CCCAGC 2 cut(s) 274, 658
PspGI CCWGG 2 cut(s) 384, 1195
PspN4I GGNNCC 3 cut(s) 1194, 1555, 1556
PspPI GGNCC 4 cut(s) 610, 656, 1208, 1554
PspPPI RGGWCCY 1 cut(s) 1554
PspXI VCTCGAGB 1 cut(s) 672
PvuII CAGCTG 1 cut(s) 1384
RsaI GTAC 3 cut(s) 845, 1304, 1388
RsaNI GTAC 3 cut(s) 844, 1303, 1387
RseI CAYNNNNRTG 1 cut(s) 1641
SaqAI TTAA 4 cut(s) 90, 549, 1203, 1368
SatI GCNGC 3 cut(s) 349, 663, 894
Sau3AI GATC 4 cut(s) 817, 1111, 1378, 1612
Sau96I GGNCC 4 cut(s) 610, 656, 1208, 1554
ScaI AGTACT 2 cut(s) 845, 1304
SchI GAGTC 4 cut(s) 157, 265, 775, 986
ScrFI CCNGG 2 cut(s) 386, 1197
SduI GDGCHC 1 cut(s) 138
SfcI CTRYAG 1 cut(s) 666
Sfr274I CTCGAG 1 cut(s) 672
SfuI TTCGAA 1 cut(s) 968
SinI GGWCC 2 cut(s) 610, 1554
SlaI CTCGAG 1 cut(s) 672
SmiMI CAYNNNNRTG 1 cut(s) 1641
SmlI CTYRAG 2 cut(s) 131, 672
SmoI CTYRAG 2 cut(s) 131, 672
Sse9I AATT 7 cut(s) 10, 265, 358, 389, 479, 519, 764
SsiI CCGC 3 cut(s) 349, 893, 1487
SspMI CTAG 7 cut(s) 399, 962, 1035, 1160, 1392, 1434, 1521
StyD4I CCNGG 2 cut(s) 384, 1195
TaaI ACNGT 2 cut(s) 144, 293
TaiI ACGT 1 cut(s) 1339
TaqI TCGA 4 cut(s) 673, 784, 792, 968
TasI AATT 7 cut(s) 10, 265, 358, 389, 479, 519, 764
TatI WGTACW 3 cut(s) 843, 1302, 1386
TauI GCSGC 2 cut(s) 351, 896
TfiI GAWTC 3 cut(s) 1156, 1178, 1682
Tru1I TTAA 4 cut(s) 90, 549, 1203, 1368
Tru9I TTAA 4 cut(s) 90, 549, 1203, 1368
TscAI CASTG 3 cut(s) 246, 298, 304
TseI GCWGC 1 cut(s) 662
TspRI CASTG 3 cut(s) 246, 298, 304
Van91I CCANNNNNTGG 1 cut(s) 1564
VpaK11BI GGWCC 2 cut(s) 610, 1554
XapI RAATTY 3 cut(s) 265, 358, 389
XbaI TCTAGA 1 cut(s) 1391
XcmI CCANNNNNNNNNTGG 1 cut(s) 1643
XhoI CTCGAG 1 cut(s) 672
XspI CTAG 7 cut(s) 399, 962, 1035, 1160, 1392, 1434, 1521
ZrmI AGTACT 2 cut(s) 845, 1304
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.