Rh6BG015400
MYB Family

Myb-related protein 308-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0014893
Physical Location & Seq
Forward (+)
2195158 .. 2196419
1262 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG015400.1

Sequence Viewer

Length: 777 bp
ATGGGGAGATCTCCTTGCTGTGAAAAGGCTCACACGAACAAAGGAGCTTGGACCAAGGAAGAAGATGATCGCCTCATTGCTTATATCCGAGCTCACGGCGAAGGCTGCTGGCGCTCTCTGCCTAAAGCAGCCGGCCTTCTTCGCTGCGGCAAGAGCTGTAGGCTGCGGTGGATCAACTACCTCAGACCGGACCTCAAGCGCGGAAATTTCACTGAAGAAGAAGATGAGCTCATCATCAAGCTCCATAGCCTCCTCGGGAACAAATGGTCTTTGATTGCTGGGAGACTACCGGGAAGAACAGACAATGAGATAAAGAACTACTGGAATACCCATATAAGAAGGAAGCTTTTGACAAGAGGTATTGACCCTGCAACTCACAGACCACTCAATGAAACACCTCAGGACTCTGCCACAACCACCACTATCTCTTTTGCTGCTTCTTCTGCTATTATTAAAGAAGAAGATCAGAAAATCAGCACCAGTATTGGGATTGTGGGCAGCAAAGACTCAAAAAACCCAGTTCAAGAGAAGTGTCCAGATTTGAATCTCGAGCTTAGAATTAGTCCTCCTAGCCAGGCCAAACCAGCTGAGTCTTTGAAGAGTGGGGGAAGAGGTGTCTGCTTTTCTTGCAGTTTGGGGTTGAAGGACTCAAAGAGTTGCAGTAGCTGTGGGATTGATAATATTGGTGCCACAAGTGCCGGCACTAGTAATATTGCTTATGATTTCTTGGGATTGAAAAATGGGGTGTTGGATTACAGAAGCTTGGAGATGAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

258

Amino Acids

28.41

Weight (kDa)

9.06

Isoelectric Point (pI)

50.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 14 - 61 6.6e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 17 - 76 1.5e-12 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 67 - 111 2.2e-19 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 70 - 116 7.5e-10 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014893)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38620
fragaria_vesca FvH4_2g01320 FvH4_2g01320
malus_domestica MD05G1120600.v1.1 MD10G1124100.v1.1
prunus_persica Prupe.8G164300_v2.0.a1
pyrus_communis pycom05g11440
rosa_chinensis RchiOBHm_Chr6g0252211
rosa_laevigata RLG00000015402
rosa_multiflora Rmu_ssc0000073.1_g000001
rosa_roxburghii Rroxscaffold_7G00216240
rosa_rugosa Rorug05G0506100.1
rosa_samantha Rh6BG015400 Rh6CG012500 Rh6DG013800
rosa_wichuraiana Rw6G001640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 686
AccII CGCG 1 cut(s) 201
AciI CCGC 3 cut(s) 147, 166, 201
AclWI GGATC 1 cut(s) 179
AcsI RAATTY 1 cut(s) 205
AcuI CTGAAG 1 cut(s) 234
AfiI CCNNNNNNNGG 2 cut(s) 187, 486
AgsI TTSAA 5 cut(s) 524, 544, 598, 643, 736
AhlI ACTAGT 1 cut(s) 704
AjnI CCWGG 1 cut(s) 573
Alw21I GWGCWC 2 cut(s) 94, 231
Alw26I GTCTC 1 cut(s) 277
AlwI GGATC 1 cut(s) 179
AlwNI CAGNNNCTG 1 cut(s) 666
Ama87I CYCGRG 2 cut(s) 254, 548
AoxI GGCC 2 cut(s) 133, 576
ApeKI GCWGC 6 cut(s) 105, 128, 144, 163, 434, 498
ApoI RAATTY 1 cut(s) 205
AspLEI GCGC 2 cut(s) 114, 201
AspS9I GGNCC 2 cut(s) 51, 190
AsuC2I CCSGG 1 cut(s) 291
AvaI CYCGRG 2 cut(s) 254, 548
AvaII GGWCC 2 cut(s) 51, 190
AxyI CCTNAGG 1 cut(s) 399
BanI GGYRCC 1 cut(s) 686
BanII GRGCYC 2 cut(s) 94, 231
Bbv12I GWGCWC 2 cut(s) 94, 231
BbvI GCAGC 6 cut(s) 92, 131, 140, 150, 421, 510
BceAI ACGGC 1 cut(s) 112
BciT130I CCWGG 1 cut(s) 575
BcnI CCSGG 1 cut(s) 291
BcoDI GTCTC 1 cut(s) 277
BcuI ACTAGT 1 cut(s) 704
BfaI CTAG 2 cut(s) 570, 705
BfmI CTRYAG 1 cut(s) 157
BfoI RGCGCY 1 cut(s) 115
BglII AGATCT 1 cut(s) 8
BisI GCNGC 7 cut(s) 106, 129, 145, 148, 164, 435, 499
BlsI GCNGC 7 cut(s) 107, 130, 146, 149, 165, 436, 500
Bme1390I CCNGG 2 cut(s) 291, 575
Bme18I GGWCC 2 cut(s) 51, 190
BmeT110I CYCGRG 2 cut(s) 254, 548
BmgT120I GGNCC 2 cut(s) 51, 190
BmiI GGNNCC 1 cut(s) 688
BmrFI CCNGG 2 cut(s) 291, 575
BmrI ACTGGG 1 cut(s) 512
BmuI ACTGGG 1 cut(s) 512
BpuEI CTTGAG 1 cut(s) 179
BpuMI CCSGG 1 cut(s) 291
BsaBI GATNNNNATC 1 cut(s) 543
BsaJI CCNNGG 2 cut(s) 54, 253
BsaWI WCCGGW 1 cut(s) 187
Bsc4I CCNNNNNNNGG 2 cut(s) 187, 486
Bse118I RCCGGY 2 cut(s) 131, 698
Bse1I ACTGG 3 cut(s) 326, 480, 518
Bse21I CCTNAGG 1 cut(s) 399
Bse3DI GCAATG 1 cut(s) 75
Bse8I GATNNNNATC 1 cut(s) 543
BseBI CCWGG 1 cut(s) 575
BseDI CCNNGG 2 cut(s) 54, 253
BseJI GATNNNNATC 1 cut(s) 543
BseLI CCNNNNNNNGG 2 cut(s) 187, 486
BseMI GCAATG 1 cut(s) 75
BseMII CTCAG 3 cut(s) 196, 413, 579
BseNI ACTGG 3 cut(s) 326, 480, 518
BseRI GAGGAG 1 cut(s) 242
BseXI GCAGC 6 cut(s) 92, 131, 140, 150, 421, 510
BseYI CCCAGC 1 cut(s) 278
Bsh1236I CGCG 1 cut(s) 201
BshFI GGCC 2 cut(s) 135, 578
BshNI GGYRCC 1 cut(s) 686
BsiHKAI GWGCWC 2 cut(s) 94, 231
BsiHKCI CYCGRG 2 cut(s) 254, 548
BsiSI CCGG 4 cut(s) 132, 188, 290, 699
BslI CCNNNNNNNGG 2 cut(s) 187, 486
BsmAI GTCTC 1 cut(s) 277
BsnI GGCC 2 cut(s) 135, 578
BsoBI CYCGRG 2 cut(s) 254, 548
Bsp1286I GDGCHC 2 cut(s) 94, 231
Bsp143I GATC 4 cut(s) 8, 67, 171, 463
BspACI CCGC 3 cut(s) 147, 166, 201
BspANI GGCC 2 cut(s) 135, 578
BspCNI CTCAG 3 cut(s) 195, 412, 580
BspFNI CGCG 1 cut(s) 201
BspLI GGNNCC 1 cut(s) 688
BspPI GGATC 1 cut(s) 179
BspT107I GGYRCC 1 cut(s) 686
BsrDI GCAATG 1 cut(s) 75
BsrFI RCCGGY 2 cut(s) 131, 698
BsrI ACTGG 3 cut(s) 326, 480, 518
BssAI RCCGGY 2 cut(s) 131, 698
BssECI CCNNGG 2 cut(s) 54, 253
BssMI GATC 4 cut(s) 8, 67, 171, 463
BssT1I CCWWGG 1 cut(s) 54
Bst2UI CCWGG 1 cut(s) 575
Bst6I CTCTTC 2 cut(s) 593, 604
BstC8I GCNNGC 3 cut(s) 110, 133, 700
BstDEI CTNAG 4 cut(s) 182, 399, 554, 588
BstFNI CGCG 1 cut(s) 201
BstH2I RGCGCY 1 cut(s) 115
BstHHI GCGC 2 cut(s) 114, 201
BstKTI GATC 4 cut(s) 11, 70, 174, 466
BstMAI GTCTC 1 cut(s) 277
BstMBI GATC 4 cut(s) 8, 67, 171, 463
BstMWI GCNNNNNNNGC 9 cut(s) 105, 111, 118, 141, 153, 443, 584, 627, 695
BstNI CCWGG 1 cut(s) 575
BstSCI CCNGG 2 cut(s) 289, 573
BstSFI CTRYAG 1 cut(s) 157
BstUI CGCG 1 cut(s) 201
BstV1I GCAGC 6 cut(s) 92, 131, 140, 150, 421, 510
BstX2I RGATCY 1 cut(s) 8
BstYI RGATCY 1 cut(s) 8
Bsu36I CCTNAGG 1 cut(s) 399
BsuRI GGCC 2 cut(s) 135, 578
BtsIMutI CAGTG 1 cut(s) 210
Cac8I GCNNGC 3 cut(s) 110, 133, 700
CaiI CAGNNNCTG 1 cut(s) 666
CfoI GCGC 2 cut(s) 114, 201
Cfr10I RCCGGY 2 cut(s) 131, 698
Cfr13I GGNCC 2 cut(s) 51, 190
DdeI CTNAG 4 cut(s) 182, 399, 554, 588
DpnI GATC 4 cut(s) 10, 69, 173, 465
DpnII GATC 4 cut(s) 8, 67, 171, 463
Eam1104I CTCTTC 2 cut(s) 593, 604
EarI CTCTTC 2 cut(s) 593, 604
Ecl136II GAGCTC 2 cut(s) 92, 229
Eco130I CCWWGG 1 cut(s) 54
Eco24I GRGCYC 2 cut(s) 94, 231
Eco47I GGWCC 2 cut(s) 51, 190
Eco53kI GAGCTC 2 cut(s) 92, 229
Eco57I CTGAAG 1 cut(s) 234
Eco81I CCTNAGG 1 cut(s) 399
Eco88I CYCGRG 2 cut(s) 254, 548
EcoICRI GAGCTC 2 cut(s) 92, 229
EcoRII CCWGG 1 cut(s) 573
EcoT14I CCWWGG 1 cut(s) 54
EcoT38I GRGCYC 2 cut(s) 94, 231
ErhI CCWWGG 1 cut(s) 54
FaiI YATR 5 cut(s) 84, 246, 333, 335, 720
Fnu4HI GCNGC 7 cut(s) 106, 129, 145, 148, 164, 435, 499
FriOI GRGCYC 2 cut(s) 94, 231
Fsp4HI GCNGC 7 cut(s) 106, 129, 145, 148, 164, 435, 499
FspBI CTAG 2 cut(s) 570, 705
GlaI GCGC 2 cut(s) 113, 200
GluI GCNGC 7 cut(s) 106, 129, 145, 148, 164, 435, 499
GsaI CCCAGC 1 cut(s) 282
HaeII RGCGCY 1 cut(s) 115
HaeIII GGCC 2 cut(s) 135, 578
HapII CCGG 4 cut(s) 132, 188, 290, 699
HhaI GCGC 2 cut(s) 114, 201
Hin6I GCGC 2 cut(s) 112, 199
HinP1I GCGC 2 cut(s) 112, 199
HindIII AAGCTT 2 cut(s) 344, 760
HinfI GANTC 5 cut(s) 404, 506, 544, 590, 647
HpaII CCGG 4 cut(s) 132, 188, 290, 699
Hpy188I TCNGA 3 cut(s) 89, 185, 468
Hpy188III TCNNGA 5 cut(s) 256, 401, 524, 536, 548
HpyAV CCTTC 4 cut(s) 95, 146, 333, 637
HpyCH4V TGCA 3 cut(s) 371, 630, 660
HpyF10VI GCNNNNNNNGC 9 cut(s) 105, 111, 118, 141, 153, 443, 584, 627, 695
HpyF3I CTNAG 4 cut(s) 182, 399, 554, 588
HspAI GCGC 2 cut(s) 112, 199
KroI GCCGGC 2 cut(s) 131, 698
KroNI GCCGGC 2 cut(s) 133, 700
Kzo9I GATC 4 cut(s) 8, 67, 171, 463
LmnI GCTCC 2 cut(s) 44, 246
Lsp1109I GCAGC 6 cut(s) 92, 131, 140, 150, 421, 510
MaeI CTAG 2 cut(s) 570, 705
MalI GATC 4 cut(s) 10, 69, 173, 465
MboI GATC 4 cut(s) 8, 67, 171, 463
MflI RGATCY 1 cut(s) 8
MhlI GDGCHC 2 cut(s) 94, 231
MluCI AATT 2 cut(s) 205, 558
MlyI GAGTC 4 cut(s) 398, 500, 599, 641
MmeI TCCRAC 1 cut(s) 729
MnlI CCTC 9 cut(s) 83, 191, 203, 260, 263, 350, 408, 576, 605
MroNI GCCGGC 2 cut(s) 131, 698
MseI TTAA 1 cut(s) 453
MspA1I CMGCKG 1 cut(s) 587
MspI CCGG 4 cut(s) 132, 188, 290, 699
MspR9I CCNGG 2 cut(s) 291, 575
MvaI CCWGG 1 cut(s) 575
MvnI CGCG 1 cut(s) 201
MwoI GCNNNNNNNGC 9 cut(s) 105, 111, 118, 141, 153, 443, 584, 627, 695
NaeI GCCGGC 2 cut(s) 133, 700
NciI CCSGG 1 cut(s) 291
NdeII GATC 4 cut(s) 8, 67, 171, 463
NgoMIV GCCGGC 2 cut(s) 131, 698
NlaIV GGNNCC 1 cut(s) 688
PaeR7I CTCGAG 1 cut(s) 548
PdiI GCCGGC 2 cut(s) 133, 700
PfeI GAWTC 1 cut(s) 544
PkrI GCNGC 7 cut(s) 107, 130, 146, 149, 165, 436, 500
PleI GAGTC 4 cut(s) 398, 500, 598, 641
PpsI GAGTC 4 cut(s) 398, 500, 598, 641
Psp124BI GAGCTC 2 cut(s) 94, 231
Psp6I CCWGG 1 cut(s) 573
PspFI CCCAGC 1 cut(s) 278
PspGI CCWGG 1 cut(s) 573
PspN4I GGNNCC 1 cut(s) 688
PspPI GGNCC 2 cut(s) 51, 190
PstNI CAGNNNCTG 1 cut(s) 666
PsuI RGATCY 1 cut(s) 8
PvuII CAGCTG 1 cut(s) 587
SacI GAGCTC 2 cut(s) 94, 231
SaqAI TTAA 1 cut(s) 453
SatI GCNGC 7 cut(s) 106, 129, 145, 148, 164, 435, 499
Sau3AI GATC 4 cut(s) 8, 67, 171, 463
Sau96I GGNCC 2 cut(s) 51, 190
SchI GAGTC 4 cut(s) 398, 500, 599, 641
ScrFI CCNGG 2 cut(s) 291, 575
SduI GDGCHC 2 cut(s) 94, 231
SfcI CTRYAG 1 cut(s) 157
Sfr274I CTCGAG 1 cut(s) 548
SinI GGWCC 2 cut(s) 51, 190
SlaI CTCGAG 1 cut(s) 548
SmlI CTYRAG 2 cut(s) 194, 548
SmoI CTYRAG 2 cut(s) 194, 548
SpeI ACTAGT 1 cut(s) 704
Sse9I AATT 2 cut(s) 205, 558
SsiI CCGC 3 cut(s) 147, 166, 201
SspI AATATT 2 cut(s) 682, 712
SspMI CTAG 2 cut(s) 570, 705
SstI GAGCTC 2 cut(s) 94, 231
StyD4I CCNGG 2 cut(s) 289, 573
StyI CCWWGG 1 cut(s) 54
TaqI TCGA 1 cut(s) 549
TasI AATT 2 cut(s) 205, 558
TauI GCSGC 1 cut(s) 150
TfiI GAWTC 1 cut(s) 544
Tru1I TTAA 1 cut(s) 453
Tru9I TTAA 1 cut(s) 453
TscAI CASTG 1 cut(s) 217
TseI GCWGC 6 cut(s) 105, 128, 144, 163, 434, 498
TspDTI ATGAA 1 cut(s) 405
TspRI CASTG 1 cut(s) 217
VpaK11BI GGWCC 2 cut(s) 51, 190
XapI RAATTY 1 cut(s) 205
XhoI CTCGAG 1 cut(s) 548
XspI CTAG 2 cut(s) 570, 705
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.