Rroxscaffold_7G00216240
MYB Family

Myb-related protein 308-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0014893
Physical Location & Seq
Reverse (-)
66951509 .. 66952875
1367 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00216240.1

Sequence Viewer

Length: 540 bp
ATGGGGAGATCTCCTTGCTGTGAAAAGGCTCACACGAACAAAGGAGCTTGGACCAAAGAAGAAGATGATCGCCTCATTGCTTATATCCGAGCTCACGGCGAAGGCTGCTGGCGCTCTCTGCCTAAAGCAGCCGGCCTTCTTCGCTGCGGCAAGAGCTGTAGGCTGCGGTGGATCAACTACCTCAGACCGGACCTCAAGCGCGGAAATTTCACTGAAGAAGAAGATGAGCTCATCATCAAGCTCCATAGCCTCCTCGGGAACAAATGGTCTTTGATTGCTGGGAGACTACCGGGAAGAACAGACAATGAGATAAAGAACTACTGGAATACCCATATAAGAAGGAAGCTTTTGACAAGAGGTATTGACCCTGCAACTCACAGACCACTCAATGAAACACCTCCGGACTCTGCCACAACCACCACTATCTCTTTTGCTGCTTCTTCTGCTATTAAAGAAGAAGATCAGAAAATCAGCACCAGTATTGGGATTGTGGGCAGCAAAGACTCAAAAACCCAGTGCAAGAGAAGTGTCCAGATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

179

Amino Acids

20.18

Weight (kDa)

9.51

Isoelectric Point (pI)

47.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 14 - 61 3.5e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 17 - 76 7.5e-13 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 67 - 111 1.2e-19 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 70 - 116 3.9e-10 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014893)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38620
fragaria_vesca FvH4_2g01320 FvH4_2g01320
malus_domestica MD05G1120600.v1.1 MD10G1124100.v1.1
prunus_persica Prupe.8G164300_v2.0.a1
pyrus_communis pycom05g11440
rosa_chinensis RchiOBHm_Chr6g0252211
rosa_laevigata RLG00000015402
rosa_multiflora Rmu_ssc0000073.1_g000001
rosa_roxburghii Rroxscaffold_7G00216240
rosa_rugosa Rorug05G0506100.1
rosa_samantha Rh6BG015400 Rh6CG012500 Rh6DG013800
rosa_wichuraiana Rw6G001640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 201
AccIII TCCGGA 1 cut(s) 400
AciI CCGC 3 cut(s) 147, 166, 201
AclWI GGATC 1 cut(s) 179
AcsI RAATTY 1 cut(s) 205
AcuI CTGAAG 1 cut(s) 234
AfiI CCNNNNNNNGG 2 cut(s) 187, 483
AluBI AGCT 6 cut(s) 47, 92, 156, 229, 241, 346
AluI AGCT 6 cut(s) 47, 92, 156, 229, 241, 346
Alw21I GWGCWC 2 cut(s) 94, 231
Alw26I GTCTC 1 cut(s) 277
AlwI GGATC 1 cut(s) 179
Ama87I CYCGRG 1 cut(s) 254
Aor13HI TCCGGA 1 cut(s) 400
AoxI GGCC 1 cut(s) 133
ApeKI GCWGC 6 cut(s) 105, 128, 144, 163, 434, 495
ApoI RAATTY 1 cut(s) 205
AspLEI GCGC 2 cut(s) 114, 201
AspS9I GGNCC 2 cut(s) 51, 190
AsuC2I CCSGG 1 cut(s) 291
AvaI CYCGRG 1 cut(s) 254
AvaII GGWCC 2 cut(s) 51, 190
BanII GRGCYC 2 cut(s) 94, 231
Bbv12I GWGCWC 2 cut(s) 94, 231
BbvI GCAGC 6 cut(s) 92, 131, 140, 150, 421, 507
BceAI ACGGC 1 cut(s) 112
BcnI CCSGG 1 cut(s) 291
BcoDI GTCTC 1 cut(s) 277
BfmI CTRYAG 1 cut(s) 157
BfoI RGCGCY 1 cut(s) 115
BglII AGATCT 1 cut(s) 8
BisI GCNGC 7 cut(s) 106, 129, 145, 148, 164, 435, 496
BlsI GCNGC 7 cut(s) 107, 130, 146, 149, 165, 436, 497
Bme1390I CCNGG 1 cut(s) 291
Bme18I GGWCC 2 cut(s) 51, 190
BmeT110I CYCGRG 1 cut(s) 254
BmgT120I GGNCC 2 cut(s) 51, 190
BmrFI CCNGG 1 cut(s) 291
BmrI ACTGGG 1 cut(s) 508
BmuI ACTGGG 1 cut(s) 508
BpuEI CTTGAG 1 cut(s) 179
BpuMI CCSGG 1 cut(s) 291
BsaJI CCNNGG 1 cut(s) 253
BsaWI WCCGGW 2 cut(s) 187, 400
Bsc4I CCNNNNNNNGG 2 cut(s) 187, 483
Bse118I RCCGGY 1 cut(s) 131
Bse1I ACTGG 3 cut(s) 326, 477, 514
Bse3DI GCAATG 1 cut(s) 75
BseAI TCCGGA 1 cut(s) 400
BseDI CCNNGG 1 cut(s) 253
BseLI CCNNNNNNNGG 2 cut(s) 187, 483
BseMI GCAATG 1 cut(s) 75
BseMII CTCAG 1 cut(s) 196
BseNI ACTGG 3 cut(s) 326, 477, 514
BseRI GAGGAG 1 cut(s) 242
BseXI GCAGC 6 cut(s) 92, 131, 140, 150, 421, 507
BseYI CCCAGC 1 cut(s) 278
Bsh1236I CGCG 1 cut(s) 201
BshFI GGCC 1 cut(s) 135
BsiHKAI GWGCWC 2 cut(s) 94, 231
BsiHKCI CYCGRG 1 cut(s) 254
BsiSI CCGG 4 cut(s) 132, 188, 290, 401
BslI CCNNNNNNNGG 2 cut(s) 187, 483
BsmAI GTCTC 1 cut(s) 277
BsnI GGCC 1 cut(s) 135
BsoBI CYCGRG 1 cut(s) 254
Bsp1286I GDGCHC 2 cut(s) 94, 231
Bsp13I TCCGGA 1 cut(s) 400
Bsp143I GATC 4 cut(s) 8, 67, 171, 460
BspACI CCGC 3 cut(s) 147, 166, 201
BspANI GGCC 1 cut(s) 135
BspCNI CTCAG 1 cut(s) 195
BspEI TCCGGA 1 cut(s) 400
BspFNI CGCG 1 cut(s) 201
BspPI GGATC 1 cut(s) 179
BsrDI GCAATG 1 cut(s) 75
BsrFI RCCGGY 1 cut(s) 131
BsrI ACTGG 3 cut(s) 326, 477, 514
BssAI RCCGGY 1 cut(s) 131
BssECI CCNNGG 1 cut(s) 253
BssMI GATC 4 cut(s) 8, 67, 171, 460
BstC8I GCNNGC 2 cut(s) 110, 133
BstDEI CTNAG 1 cut(s) 182
BstFNI CGCG 1 cut(s) 201
BstH2I RGCGCY 1 cut(s) 115
BstHHI GCGC 2 cut(s) 114, 201
BstKTI GATC 4 cut(s) 11, 70, 174, 463
BstMAI GTCTC 1 cut(s) 277
BstMBI GATC 4 cut(s) 8, 67, 171, 460
BstMWI GCNNNNNNNGC 6 cut(s) 105, 111, 118, 141, 153, 443
BstSCI CCNGG 1 cut(s) 289
BstSFI CTRYAG 1 cut(s) 157
BstUI CGCG 1 cut(s) 201
BstV1I GCAGC 6 cut(s) 92, 131, 140, 150, 421, 507
BstX2I RGATCY 1 cut(s) 8
BstYI RGATCY 1 cut(s) 8
BsuRI GGCC 1 cut(s) 135
BtsIMutI CAGTG 2 cut(s) 210, 521
Cac8I GCNNGC 2 cut(s) 110, 133
CfoI GCGC 2 cut(s) 114, 201
Cfr10I RCCGGY 1 cut(s) 131
Cfr13I GGNCC 2 cut(s) 51, 190
DdeI CTNAG 1 cut(s) 182
DpnI GATC 4 cut(s) 10, 69, 173, 462
DpnII GATC 4 cut(s) 8, 67, 171, 460
Ecl136II GAGCTC 2 cut(s) 92, 229
Eco24I GRGCYC 2 cut(s) 94, 231
Eco47I GGWCC 2 cut(s) 51, 190
Eco53kI GAGCTC 2 cut(s) 92, 229
Eco57I CTGAAG 1 cut(s) 234
Eco88I CYCGRG 1 cut(s) 254
EcoICRI GAGCTC 2 cut(s) 92, 229
EcoT38I GRGCYC 2 cut(s) 94, 231
FaiI YATR 4 cut(s) 84, 246, 333, 335
Fnu4HI GCNGC 7 cut(s) 106, 129, 145, 148, 164, 435, 496
FriOI GRGCYC 2 cut(s) 94, 231
Fsp4HI GCNGC 7 cut(s) 106, 129, 145, 148, 164, 435, 496
GlaI GCGC 2 cut(s) 113, 200
GluI GCNGC 7 cut(s) 106, 129, 145, 148, 164, 435, 496
GsaI CCCAGC 1 cut(s) 282
HaeII RGCGCY 1 cut(s) 115
HaeIII GGCC 1 cut(s) 135
HapII CCGG 4 cut(s) 132, 188, 290, 401
HhaI GCGC 2 cut(s) 114, 201
Hin6I GCGC 2 cut(s) 112, 199
HinP1I GCGC 2 cut(s) 112, 199
HindIII AAGCTT 1 cut(s) 344
HinfI GANTC 2 cut(s) 404, 503
HpaII CCGG 4 cut(s) 132, 188, 290, 401
Hpy188I TCNGA 3 cut(s) 89, 185, 465
Hpy188III TCNNGA 3 cut(s) 256, 401, 532
HpyAV CCTTC 3 cut(s) 95, 146, 333
HpyCH4V TGCA 2 cut(s) 371, 519
HpyF10VI GCNNNNNNNGC 6 cut(s) 105, 111, 118, 141, 153, 443
HpyF3I CTNAG 1 cut(s) 182
HspAI GCGC 2 cut(s) 112, 199
Kpn2I TCCGGA 1 cut(s) 400
KroI GCCGGC 1 cut(s) 131
KroNI GCCGGC 1 cut(s) 133
Kzo9I GATC 4 cut(s) 8, 67, 171, 460
LmnI GCTCC 2 cut(s) 44, 246
Lsp1109I GCAGC 6 cut(s) 92, 131, 140, 150, 421, 507
MalI GATC 4 cut(s) 10, 69, 173, 462
MboI GATC 4 cut(s) 8, 67, 171, 460
MflI RGATCY 1 cut(s) 8
MhlI GDGCHC 2 cut(s) 94, 231
MluCI AATT 1 cut(s) 205
MlyI GAGTC 2 cut(s) 398, 497
MnlI CCTC 7 cut(s) 83, 191, 203, 260, 263, 350, 408
MroI TCCGGA 1 cut(s) 400
MroNI GCCGGC 1 cut(s) 131
MseI TTAA 1 cut(s) 450
MspI CCGG 4 cut(s) 132, 188, 290, 401
MspR9I CCNGG 1 cut(s) 291
MvnI CGCG 1 cut(s) 201
MwoI GCNNNNNNNGC 6 cut(s) 105, 111, 118, 141, 153, 443
NaeI GCCGGC 1 cut(s) 133
NciI CCSGG 1 cut(s) 291
NdeII GATC 4 cut(s) 8, 67, 171, 460
NgoMIV GCCGGC 1 cut(s) 131
PdiI GCCGGC 1 cut(s) 133
PkrI GCNGC 7 cut(s) 107, 130, 146, 149, 165, 436, 497
PleI GAGTC 2 cut(s) 398, 497
PpsI GAGTC 2 cut(s) 398, 497
Psp124BI GAGCTC 2 cut(s) 94, 231
PspFI CCCAGC 1 cut(s) 278
PspPI GGNCC 2 cut(s) 51, 190
PsuI RGATCY 1 cut(s) 8
SacI GAGCTC 2 cut(s) 94, 231
SaqAI TTAA 1 cut(s) 450
SatI GCNGC 7 cut(s) 106, 129, 145, 148, 164, 435, 496
Sau3AI GATC 4 cut(s) 8, 67, 171, 460
Sau96I GGNCC 2 cut(s) 51, 190
SchI GAGTC 2 cut(s) 398, 497
ScrFI CCNGG 1 cut(s) 291
SduI GDGCHC 2 cut(s) 94, 231
SfcI CTRYAG 1 cut(s) 157
SinI GGWCC 2 cut(s) 51, 190
SmlI CTYRAG 1 cut(s) 194
SmoI CTYRAG 1 cut(s) 194
Sse9I AATT 1 cut(s) 205
SsiI CCGC 3 cut(s) 147, 166, 201
SstI GAGCTC 2 cut(s) 94, 231
StyD4I CCNGG 1 cut(s) 289
TasI AATT 1 cut(s) 205
TauI GCSGC 1 cut(s) 150
Tru1I TTAA 1 cut(s) 450
Tru9I TTAA 1 cut(s) 450
TscAI CASTG 2 cut(s) 217, 521
TseI GCWGC 6 cut(s) 105, 128, 144, 163, 434, 495
TspDTI ATGAA 1 cut(s) 405
TspRI CASTG 2 cut(s) 217, 521
VpaK11BI GGWCC 2 cut(s) 51, 190
XapI RAATTY 1 cut(s) 205
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.