MD05G1120600.v1.1
MYB Family

Myb-related protein 308-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0014893
Physical Location & Seq
Reverse (-)
24269445 .. 24270809
1365 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1120600.v1.1.491

Sequence Viewer

Length: 768 bp
ATGGGAAGGTCTCCTTGCTGTGAGAAGGCTCACACCAACAAAGGAGCTTGGACCAAGGAAGAAGACGACCGCCTCATTGCCTACATCAGAGCTCACGGCGAAGGCTGCTGGCGTTCGCTGCCCAAGGCGGCGGGCCTCCTTCGATGTGGGAAGAGCTGCAGGCTGCGGTGGATCAACTACCTTAGACCTGATCTCAAGCGTGGCAATTTCACGGAAGAAGAAGATGAGCTCATCATCAAACTCCATAGCCTCCTCGGAAACAAATGGTCTTTGATAGCTGGAAGGCTGCCTGGAAGAACAGACAATGAGATAAAGAACTACTGGAACACCCACATAAGAAGGAAGCTTTTGACCAGAGGGATTGACCCCACAACTCACAGGCCACTCAATGAGACTCCTCAGGAATCTGCAAACACAATTTCTTTTGCTGCTGCTTCTGCAAATATCAAAGAAGATGATGAAAAAATCTCCATAACCAATGGGCTTGTTCGCAAGCATTCAACAAACCCAGCTCAGGAAAGGTGCCCTGACTTGAATCTTGAGCTTCAAATCAGCCCTCCCTGCCAGCCTCAGCAACCCAGTGAGAGTTTGAAGAGTGGAGGGAGAGGACTCTGTTTTTCTTGCAGTTTGGGGATTCAAGATGCAAAGAATTGCAGCTGTGGGAGGGATGCTTTTGGTGGCGCCACCAGTGGCACTGCCAAAATTGGTTATGATTTCTTGGGGCTGAAAAATGGGGTCTTGGATTACAGAAGCTTGGAGATGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

256

Amino Acids

28.37

Weight (kDa)

8.94

Isoelectric Point (pI)

44.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 14 - 61 6.5e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 17 - 75 3.5e-12 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 67 - 111 2.2e-19 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 70 - 115 8.4e-10 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014893)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38620
fragaria_vesca FvH4_2g01320 FvH4_2g01320
malus_domestica MD05G1120600.v1.1 MD10G1124100.v1.1
prunus_persica Prupe.8G164300_v2.0.a1
pyrus_communis pycom05g11440
rosa_chinensis RchiOBHm_Chr6g0252211
rosa_laevigata RLG00000015402
rosa_multiflora Rmu_ssc0000073.1_g000001
rosa_roxburghii Rroxscaffold_7G00216240
rosa_rugosa Rorug05G0506100.1
rosa_samantha Rh6BG015400 Rh6CG012500 Rh6DG013800
rosa_wichuraiana Rw6G001640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 522, 680
AciI CCGC 4 cut(s) 70, 128, 131, 166
AclWI GGATC 1 cut(s) 179
AcyI GRCGYC 1 cut(s) 681
AfiI CCNNNNNNNGG 1 cut(s) 514
AgsI TTSAA 5 cut(s) 501, 535, 548, 592, 638
AjnI CCWGG 1 cut(s) 289
Alw21I GWGCWC 2 cut(s) 94, 231
Alw26I GTCTC 2 cut(s) 15, 386
AlwI GGATC 1 cut(s) 179
AoxI GGCC 2 cut(s) 133, 380
ApeKI GCWGC 8 cut(s) 105, 118, 156, 163, 286, 428, 431, 654
AspLEI GCGC 1 cut(s) 683
AspS9I GGNCC 2 cut(s) 51, 133
AvaII GGWCC 1 cut(s) 51
AxyI CCTNAGG 1 cut(s) 399
BaeGI GKGCMC 1 cut(s) 527
BanI GGYRCC 2 cut(s) 522, 680
BanII GRGCYC 2 cut(s) 94, 231
BbsI GAAGAC 1 cut(s) 69
Bbv12I GWGCWC 2 cut(s) 94, 231
BbvCI CCTCAGC 1 cut(s) 570
BbvI GCAGC 8 cut(s) 92, 105, 143, 150, 273, 415, 418, 666
BceAI ACGGC 1 cut(s) 112
BciT130I CCWGG 1 cut(s) 291
BcoDI GTCTC 2 cut(s) 15, 386
BfmI CTRYAG 1 cut(s) 157
BfoI RGCGCY 1 cut(s) 684
BisI GCNGC 9 cut(s) 106, 119, 129, 157, 164, 287, 429, 432, 655
BlsI GCNGC 9 cut(s) 107, 120, 130, 158, 165, 288, 430, 433, 656
Bme1390I CCNGG 1 cut(s) 291
Bme18I GGWCC 1 cut(s) 51
BmgT120I GGNCC 2 cut(s) 51, 133
BmiI GGNNCC 2 cut(s) 524, 682
BmrFI CCNGG 1 cut(s) 291
BmrI ACTGGG 1 cut(s) 573
BmsI GCATC 2 cut(s) 631, 658
BmuI ACTGGG 1 cut(s) 573
BpiI GAAGAC 1 cut(s) 69
Bpu10I CCTNAGC 2 cut(s) 513, 570
BpuEI CTTGAG 2 cut(s) 179, 560
BsaHI GRCGYC 1 cut(s) 681
BsaI GGTCTC 1 cut(s) 15
BsaJI CCNNGG 3 cut(s) 54, 123, 253
Bsc4I CCNNNNNNNGG 1 cut(s) 514
Bse1I ACTGG 3 cut(s) 326, 579, 687
Bse21I CCTNAGG 1 cut(s) 399
Bse3DI GCAATG 1 cut(s) 75
BseBI CCWGG 1 cut(s) 291
BseDI CCNNGG 3 cut(s) 54, 123, 253
BseGI GGATG 1 cut(s) 673
BseLI CCNNNNNNNGG 1 cut(s) 514
BseMI GCAATG 1 cut(s) 75
BseMII CTCAG 3 cut(s) 413, 527, 584
BseNI ACTGG 3 cut(s) 326, 579, 687
BseRI GAGGAG 2 cut(s) 242, 387
BseSI GKGCMC 1 cut(s) 527
BseXI GCAGC 8 cut(s) 92, 105, 143, 150, 273, 415, 418, 666
BseYI CCCAGC 1 cut(s) 508
Bsh1285I CGRYCG 1 cut(s) 70
BshFI GGCC 2 cut(s) 135, 382
BshNI GGYRCC 2 cut(s) 522, 680
BsiEI CGRYCG 1 cut(s) 70
BsiHKAI GWGCWC 2 cut(s) 94, 231
BslI CCNNNNNNNGG 1 cut(s) 514
BsmAI GTCTC 2 cut(s) 15, 386
BsmI GAATGC 1 cut(s) 496
BsnI GGCC 2 cut(s) 135, 382
Bso31I GGTCTC 1 cut(s) 15
Bsp1286I GDGCHC 3 cut(s) 94, 231, 527
Bsp143I GATC 2 cut(s) 171, 190
BspACI CCGC 4 cut(s) 70, 128, 131, 166
BspANI GGCC 2 cut(s) 135, 382
BspCNI CTCAG 3 cut(s) 412, 526, 583
BspLI GGNNCC 2 cut(s) 524, 682
BspMAI CTGCAG 1 cut(s) 161
BspPI GGATC 1 cut(s) 179
BspQI GCTCTTC 1 cut(s) 146
BspT107I GGYRCC 2 cut(s) 522, 680
BspTNI GGTCTC 1 cut(s) 15
BsrDI GCAATG 1 cut(s) 75
BsrI ACTGG 3 cut(s) 326, 579, 687
BssECI CCNNGG 3 cut(s) 54, 123, 253
BssMI GATC 2 cut(s) 171, 190
BssNI GRCGYC 1 cut(s) 681
BssT1I CCWWGG 2 cut(s) 54, 123
Bst2UI CCWGG 1 cut(s) 291
Bst6I CTCTTC 2 cut(s) 146, 587
BstACI GRCGYC 1 cut(s) 681
BstC8I GCNNGC 5 cut(s) 110, 133, 161, 494, 566
BstDEI CTNAG 4 cut(s) 182, 399, 513, 570
BstF5I GGATG 1 cut(s) 673
BstH2I RGCGCY 1 cut(s) 684
BstHHI GCGC 1 cut(s) 683
BstKTI GATC 2 cut(s) 174, 193
BstMAI GTCTC 2 cut(s) 15, 386
BstMBI GATC 2 cut(s) 171, 190
BstMCI CGRYCG 1 cut(s) 70
BstMWI GCNNNNNNNGC 4 cut(s) 105, 118, 437, 561
BstNI CCWGG 1 cut(s) 291
BstSCI CCNGG 1 cut(s) 289
BstSFI CTRYAG 1 cut(s) 157
BstSLI GKGCMC 1 cut(s) 527
BstV1I GCAGC 8 cut(s) 92, 105, 143, 150, 273, 415, 418, 666
BstV2I GAAGAC 1 cut(s) 69
Bsu36I CCTNAGG 1 cut(s) 399
BsuRI GGCC 2 cut(s) 135, 382
BtsCI GGATG 1 cut(s) 673
BtsI GCAGTG 1 cut(s) 693
BtsIMutI CAGTG 3 cut(s) 586, 693, 694
Cac8I GCNNGC 5 cut(s) 110, 133, 161, 494, 566
CfoI GCGC 1 cut(s) 683
Cfr13I GGNCC 2 cut(s) 51, 133
DdeI CTNAG 4 cut(s) 182, 399, 513, 570
DinI GGCGCC 1 cut(s) 682
DpnI GATC 2 cut(s) 173, 192
DpnII GATC 2 cut(s) 171, 190
Eam1104I CTCTTC 2 cut(s) 146, 587
EarI CTCTTC 2 cut(s) 146, 587
Ecl136II GAGCTC 2 cut(s) 92, 229
Eco130I CCWWGG 2 cut(s) 54, 123
Eco24I GRGCYC 2 cut(s) 94, 231
Eco31I GGTCTC 1 cut(s) 15
Eco47I GGWCC 1 cut(s) 51
Eco53kI GAGCTC 2 cut(s) 92, 229
Eco81I CCTNAGG 1 cut(s) 399
EcoICRI GAGCTC 2 cut(s) 92, 229
EcoRII CCWGG 1 cut(s) 289
EcoT14I CCWWGG 2 cut(s) 54, 123
EcoT38I GRGCYC 2 cut(s) 94, 231
EgeI GGCGCC 1 cut(s) 682
EheI GGCGCC 1 cut(s) 682
ErhI CCWWGG 2 cut(s) 54, 123
FaiI YATR 4 cut(s) 246, 335, 473, 711
FalI AAGNNNNNCTT 1 cut(s) 30
FauI CCCGC 1 cut(s) 124
Fnu4HI GCNGC 9 cut(s) 106, 119, 129, 157, 164, 287, 429, 432, 655
FokI GGATG 1 cut(s) 680
FriOI GRGCYC 2 cut(s) 94, 231
Fsp4HI GCNGC 9 cut(s) 106, 119, 129, 157, 164, 287, 429, 432, 655
GlaI GCGC 1 cut(s) 682
GluI GCNGC 9 cut(s) 106, 119, 129, 157, 164, 287, 429, 432, 655
GsaI CCCAGC 1 cut(s) 512
HaeII RGCGCY 1 cut(s) 684
HaeIII GGCC 2 cut(s) 135, 382
HhaI GCGC 1 cut(s) 683
Hin1I GRCGYC 1 cut(s) 681
Hin6I GCGC 1 cut(s) 681
HinP1I GCGC 1 cut(s) 681
HindIII AAGCTT 2 cut(s) 344, 751
HinfI GANTC 5 cut(s) 394, 404, 535, 609, 634
Hpy188I TCNGA 2 cut(s) 89, 257
Hpy188III TCNNGA 4 cut(s) 401, 515, 539, 638
HpyAV CCTTC 5 cut(s) 19, 95, 149, 276, 333
HpyCH4V TGCA 6 cut(s) 159, 410, 440, 624, 644, 654
HpyF10VI GCNNNNNNNGC 4 cut(s) 105, 118, 437, 561
HpyF3I CTNAG 4 cut(s) 182, 399, 513, 570
Hsp92I GRCGYC 1 cut(s) 681
HspAI GCGC 1 cut(s) 681
KasI GGCGCC 1 cut(s) 680
Kzo9I GATC 2 cut(s) 171, 190
LguI GCTCTTC 1 cut(s) 146
LmnI GCTCC 1 cut(s) 44
Lsp1109I GCAGC 8 cut(s) 92, 105, 143, 150, 273, 415, 418, 666
LweI GCATC 2 cut(s) 631, 658
MalI GATC 2 cut(s) 173, 192
MboI GATC 2 cut(s) 171, 190
MboII GAAGA 9 cut(s) 71, 74, 163, 227, 230, 233, 306, 464, 604
MhlI GDGCHC 3 cut(s) 94, 231, 527
MluCI AATT 4 cut(s) 205, 417, 649, 702
Mly113I GGCGCC 1 cut(s) 681
MlyI GAGTC 2 cut(s) 388, 603
MspA1I CMGCKG 1 cut(s) 657
MspR9I CCNGG 1 cut(s) 291
Mva1269I GAATGC 1 cut(s) 496
MvaI CCWGG 1 cut(s) 291
MwoI GCNNNNNNNGC 4 cut(s) 105, 118, 437, 561
NarI GGCGCC 1 cut(s) 681
NdeII GATC 2 cut(s) 171, 190
NlaIV GGNNCC 2 cut(s) 524, 682
PciSI GCTCTTC 1 cut(s) 146
PctI GAATGC 1 cut(s) 496
PfeI GAWTC 3 cut(s) 404, 535, 634
PkrI GCNGC 9 cut(s) 107, 120, 130, 158, 165, 288, 430, 433, 656
PleI GAGTC 2 cut(s) 388, 603
PluTI GGCGCC 1 cut(s) 684
PpsI GAGTC 2 cut(s) 388, 603
Psp124BI GAGCTC 2 cut(s) 94, 231
Psp6I CCWGG 1 cut(s) 289
PspFI CCCAGC 1 cut(s) 508
PspGI CCWGG 1 cut(s) 289
PspN4I GGNNCC 2 cut(s) 524, 682
PspPI GGNCC 2 cut(s) 51, 133
PstI CTGCAG 1 cut(s) 161
PvuII CAGCTG 1 cut(s) 657
SacI GAGCTC 2 cut(s) 94, 231
SapI GCTCTTC 1 cut(s) 146
SatI GCNGC 9 cut(s) 106, 119, 129, 157, 164, 287, 429, 432, 655
Sau3AI GATC 2 cut(s) 171, 190
Sau96I GGNCC 2 cut(s) 51, 133
SchI GAGTC 2 cut(s) 388, 603
ScrFI CCNGG 1 cut(s) 291
SduI GDGCHC 3 cut(s) 94, 231, 527
SfaNI GCATC 2 cut(s) 631, 658
SfcI CTRYAG 1 cut(s) 157
SfoI GGCGCC 1 cut(s) 682
SinI GGWCC 1 cut(s) 51
SmlI CTYRAG 2 cut(s) 194, 539
SmoI CTYRAG 2 cut(s) 194, 539
Sse9I AATT 4 cut(s) 205, 417, 649, 702
SsiI CCGC 4 cut(s) 70, 128, 131, 166
SspDI GGCGCC 1 cut(s) 680
SstI GAGCTC 2 cut(s) 94, 231
StyD4I CCNGG 1 cut(s) 289
StyI CCWWGG 2 cut(s) 54, 123
TaqI TCGA 1 cut(s) 142
TasI AATT 4 cut(s) 205, 417, 649, 702
TauI GCSGC 1 cut(s) 131
TfiI GAWTC 3 cut(s) 404, 535, 634
TscAI CASTG 3 cut(s) 586, 694, 700
TseI GCWGC 8 cut(s) 105, 118, 156, 163, 286, 428, 431, 654
TspDTI ATGAA 1 cut(s) 474
TspGWI ACGGA 1 cut(s) 227
TspRI CASTG 3 cut(s) 586, 694, 700
VpaK11BI GGWCC 1 cut(s) 51
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.