Prupe.8G164300_v2.0.a1
MYB Family

Myb-related protein 308-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0014893
Physical Location & Seq
Reverse (-)
17130914 .. 17132558
1645 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G164300.1

Sequence Viewer

Length: 771 bp
ATGGGAAGATCTCCTTGCTGTGAAAAGGCTCACACCAACAAAGGAGCTTGGACCAAAGAAGAAGACGATCGCCTCATTGCCTACATCAGAGCCCATGGCGAAGGCTGCTGGCGCTCACTCCCCAAAGCTGCTGGTCTCCTTAGATGTGGGAAGAGTTGCAGGCTGCGTTGGATCAATTACCTTAGACCTGATCTCAAACGTGGCAATTTCACTGAAGAAGAAGATGAGCTCATCATCAAACTCCATAGCCTCCTCGGAAACAAATGGTCTTTGATAGCTGGAAGACTACCTGGAAGAACAGACAATGAGATAAAGAACTACTGGAACACCCACATAAGAAGGAAGCTTTTGACCAGAGGTATCGACCCTACAACTCACAGAGCACTCAATGAGGCAGCTCAGGATTCTGCTACCACCACAATTTCTTTTGCAGCTTCTGCTAATATCAAAGAAGAAGATCAAAAAAGCAGCATTATTAATGGGCTTCTGGGCAAAGACTCAAAGAAACCAGTTCAAGAAAGGTGCCCAGACTTGAACCTTGAGCTCCAAATCAGCCCTCCTTGCCAGCCACAACAACCCAGTGAGCCTTTGAAGAGTGGAGGGAGGGGCGTTTGCTTTTCTTGCAGTTTGGGGCTTCAAGATGCAAAGAATTGCAGCTGTGGAATTGACACTATTGGCAGCAGCACCACCAGTGGCACCACCAATGTTGGTTATGATTTCTTGGGCTTGAAAAGTGGGGTTTTGGATTACAGAAGCTTGGAGATGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

257

Amino Acids

28.32

Weight (kDa)

8.84

Isoelectric Point (pI)

48.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014893)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38620
fragaria_vesca FvH4_2g01320 FvH4_2g01320
malus_domestica MD05G1120600.v1.1 MD10G1124100.v1.1
prunus_persica Prupe.8G164300_v2.0.a1
pyrus_communis pycom05g11440
rosa_chinensis RchiOBHm_Chr6g0252211
rosa_laevigata RLG00000015402
rosa_multiflora Rmu_ssc0000073.1_g000001
rosa_roxburghii Rroxscaffold_7G00216240
rosa_rugosa Rorug05G0506100.1
rosa_samantha Rh6BG015400 Rh6CG012500 Rh6DG013800
rosa_wichuraiana Rw6G001640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 522, 695
AclWI GGATC 1 cut(s) 179
AcuI CTGAAG 1 cut(s) 234
AgsI TTSAA 5 cut(s) 515, 535, 592, 638, 730
AjnI CCWGG 1 cut(s) 289
Alw21I GWGCWC 3 cut(s) 231, 385, 546
Alw26I GTCTC 1 cut(s) 140
AlwI GGATC 1 cut(s) 179
AlwNI CAGNNNCTG 1 cut(s) 437
ApeKI GCWGC 9 cut(s) 105, 128, 163, 395, 431, 468, 654, 678, 681
AseI ATTAAT 1 cut(s) 477
AspLEI GCGC 1 cut(s) 114
AspS9I GGNCC 1 cut(s) 51
AvaII GGWCC 1 cut(s) 51
BaeGI GKGCMC 1 cut(s) 527
BanI GGYRCC 2 cut(s) 522, 695
BanII GRGCYC 3 cut(s) 94, 231, 546
BbsI GAAGAC 2 cut(s) 69, 289
Bbv12I GWGCWC 3 cut(s) 231, 385, 546
BbvI GCAGC 9 cut(s) 92, 115, 150, 407, 443, 480, 666, 690, 693
BciT130I CCWGG 1 cut(s) 291
BcoDI GTCTC 1 cut(s) 140
BfoI RGCGCY 1 cut(s) 115
BglII AGATCT 1 cut(s) 8
BisI GCNGC 9 cut(s) 106, 129, 164, 396, 432, 469, 655, 679, 682
BlsI GCNGC 9 cut(s) 107, 130, 165, 397, 433, 470, 656, 680, 683
Bme1390I CCNGG 1 cut(s) 291
Bme18I GGWCC 1 cut(s) 51
BmgT120I GGNCC 1 cut(s) 51
BmiI GGNNCC 2 cut(s) 524, 697
BmrFI CCNGG 1 cut(s) 291
BmrI ACTGGG 1 cut(s) 573
BmsI GCATC 1 cut(s) 631
BmuI ACTGGG 1 cut(s) 573
BpiI GAAGAC 2 cut(s) 69, 289
Bpu10I CCTNAGC 1 cut(s) 399
BpuEI CTTGAG 1 cut(s) 560
BsaI GGTCTC 1 cut(s) 140
BsaJI CCNNGG 2 cut(s) 94, 253
Bse1I ACTGG 4 cut(s) 326, 509, 579, 690
Bse3DI GCAATG 1 cut(s) 75
BseBI CCWGG 1 cut(s) 291
BseDI CCNNGG 2 cut(s) 94, 253
BseMI GCAATG 1 cut(s) 75
BseMII CTCAG 1 cut(s) 413
BseNI ACTGG 4 cut(s) 326, 509, 579, 690
BseRI GAGGAG 1 cut(s) 242
BseSI GKGCMC 1 cut(s) 527
BseXI GCAGC 9 cut(s) 92, 115, 150, 407, 443, 480, 666, 690, 693
Bsh1285I CGRYCG 1 cut(s) 70
BshNI GGYRCC 2 cut(s) 522, 695
BsiEI CGRYCG 1 cut(s) 70
BsiHKAI GWGCWC 3 cut(s) 231, 385, 546
BsmAI GTCTC 1 cut(s) 140
Bso31I GGTCTC 1 cut(s) 140
Bsp1286I GDGCHC 5 cut(s) 94, 231, 385, 527, 546
Bsp143I GATC 5 cut(s) 8, 67, 171, 190, 457
Bsp19I CCATGG 1 cut(s) 94
BspCNI CTCAG 1 cut(s) 412
BspLI GGNNCC 2 cut(s) 524, 697
BspPI GGATC 1 cut(s) 179
BspT107I GGYRCC 2 cut(s) 522, 695
BspTNI GGTCTC 1 cut(s) 140
BsrDI GCAATG 1 cut(s) 75
BsrI ACTGG 4 cut(s) 326, 509, 579, 690
BssECI CCNNGG 2 cut(s) 94, 253
BssMI GATC 5 cut(s) 8, 67, 171, 190, 457
BssT1I CCWWGG 1 cut(s) 94
Bst2UI CCWGG 1 cut(s) 291
Bst6I CTCTTC 2 cut(s) 146, 587
BstAPI GCANNNNNTGC 1 cut(s) 437
BstC8I GCNNGC 3 cut(s) 110, 161, 566
BstDEI CTNAG 3 cut(s) 140, 182, 399
BstDSI CCRYGG 1 cut(s) 94
BstH2I RGCGCY 1 cut(s) 115
BstHHI GCGC 1 cut(s) 114
BstKTI GATC 5 cut(s) 11, 70, 174, 193, 460
BstMAI GTCTC 1 cut(s) 140
BstMBI GATC 5 cut(s) 8, 67, 171, 190, 457
BstMCI CGRYCG 1 cut(s) 70
BstMWI GCNNNNNNNGC 5 cut(s) 105, 111, 437, 561, 621
BstNI CCWGG 1 cut(s) 291
BstSCI CCNGG 1 cut(s) 289
BstSLI GKGCMC 1 cut(s) 527
BstV1I GCAGC 9 cut(s) 92, 115, 150, 407, 443, 480, 666, 690, 693
BstV2I GAAGAC 2 cut(s) 69, 289
BstX2I RGATCY 1 cut(s) 8
BstYI RGATCY 1 cut(s) 8
BtgI CCRYGG 1 cut(s) 94
BtsIMutI CAGTG 3 cut(s) 210, 586, 697
Cac8I GCNNGC 3 cut(s) 110, 161, 566
CaiI CAGNNNCTG 1 cut(s) 437
CfoI GCGC 1 cut(s) 114
Cfr13I GGNCC 1 cut(s) 51
CspCI CAANNNNNGTGG 2 cut(s) 688, 723
CviAII CATG 1 cut(s) 95
DdeI CTNAG 3 cut(s) 140, 182, 399
DpnI GATC 5 cut(s) 10, 69, 173, 192, 459
DpnII GATC 5 cut(s) 8, 67, 171, 190, 457
Eam1104I CTCTTC 2 cut(s) 146, 587
EarI CTCTTC 2 cut(s) 146, 587
Ecl136II GAGCTC 2 cut(s) 229, 544
Eco130I CCWWGG 1 cut(s) 94
Eco24I GRGCYC 3 cut(s) 94, 231, 546
Eco31I GGTCTC 1 cut(s) 140
Eco47I GGWCC 1 cut(s) 51
Eco53kI GAGCTC 2 cut(s) 229, 544
Eco57I CTGAAG 1 cut(s) 234
EcoICRI GAGCTC 2 cut(s) 229, 544
EcoRII CCWGG 1 cut(s) 289
EcoT14I CCWWGG 1 cut(s) 94
EcoT38I GRGCYC 3 cut(s) 94, 231, 546
ErhI CCWWGG 1 cut(s) 94
FaeI CATG 1 cut(s) 98
FaiI YATR 4 cut(s) 96, 246, 335, 714
FalI AAGNNNNNCTT 1 cut(s) 30
FatI CATG 1 cut(s) 94
Fnu4HI GCNGC 9 cut(s) 106, 129, 164, 396, 432, 469, 655, 679, 682
FriOI GRGCYC 3 cut(s) 94, 231, 546
Fsp4HI GCNGC 9 cut(s) 106, 129, 164, 396, 432, 469, 655, 679, 682
GlaI GCGC 1 cut(s) 113
GluI GCNGC 9 cut(s) 106, 129, 164, 396, 432, 469, 655, 679, 682
HaeII RGCGCY 1 cut(s) 115
HhaI GCGC 1 cut(s) 114
Hin1II CATG 1 cut(s) 98
Hin6I GCGC 1 cut(s) 112
HinP1I GCGC 1 cut(s) 112
HindIII AAGCTT 2 cut(s) 344, 754
HinfI GANTC 2 cut(s) 404, 497
Hpy188I TCNGA 2 cut(s) 89, 257
Hpy188III TCNNGA 3 cut(s) 401, 515, 638
HpyAV CCTTC 2 cut(s) 95, 333
HpyCH4IV ACGT 1 cut(s) 199
HpyCH4V TGCA 5 cut(s) 159, 431, 624, 644, 654
HpyF10VI GCNNNNNNNGC 5 cut(s) 105, 111, 437, 561, 621
HpyF3I CTNAG 3 cut(s) 140, 182, 399
HpySE526I ACGT 1 cut(s) 199
Hsp92II CATG 1 cut(s) 98
HspAI GCGC 1 cut(s) 112
Kzo9I GATC 5 cut(s) 8, 67, 171, 190, 457
LmnI GCTCC 2 cut(s) 44, 549
Lsp1109I GCAGC 9 cut(s) 92, 115, 150, 407, 443, 480, 666, 690, 693
LweI GCATC 1 cut(s) 631
MaeII ACGT 1 cut(s) 199
MalI GATC 5 cut(s) 10, 69, 173, 192, 459
MboI GATC 5 cut(s) 8, 67, 171, 190, 457
MflI RGATCY 1 cut(s) 8
MhlI GDGCHC 5 cut(s) 94, 231, 385, 527, 546
MluCI AATT 5 cut(s) 175, 205, 420, 649, 663
MlyI GAGTC 1 cut(s) 491
MmeI TCCRAC 1 cut(s) 149
MnlI CCTC 8 cut(s) 83, 260, 263, 350, 385, 567, 593, 597
MseI TTAA 1 cut(s) 477
MspA1I CMGCKG 1 cut(s) 657
MspR9I CCNGG 1 cut(s) 291
MvaI CCWGG 1 cut(s) 291
MwoI GCNNNNNNNGC 5 cut(s) 105, 111, 437, 561, 621
NcoI CCATGG 1 cut(s) 94
NdeII GATC 5 cut(s) 8, 67, 171, 190, 457
NlaIII CATG 1 cut(s) 98
NlaIV GGNNCC 2 cut(s) 524, 697
PfeI GAWTC 1 cut(s) 404
PkrI GCNGC 9 cut(s) 107, 130, 165, 397, 433, 470, 656, 680, 683
Ple19I CGATCG 1 cut(s) 70
PleI GAGTC 1 cut(s) 491
PpsI GAGTC 1 cut(s) 491
PshBI ATTAAT 1 cut(s) 477
Psp124BI GAGCTC 2 cut(s) 231, 546
Psp6I CCWGG 1 cut(s) 289
PspGI CCWGG 1 cut(s) 289
PspN4I GGNNCC 2 cut(s) 524, 697
PspPI GGNCC 1 cut(s) 51
PstNI CAGNNNCTG 1 cut(s) 437
PsuI RGATCY 1 cut(s) 8
PvuI CGATCG 1 cut(s) 70
PvuII CAGCTG 1 cut(s) 657
SacI GAGCTC 2 cut(s) 231, 546
SaqAI TTAA 1 cut(s) 477
SatI GCNGC 9 cut(s) 106, 129, 164, 396, 432, 469, 655, 679, 682
Sau3AI GATC 5 cut(s) 8, 67, 171, 190, 457
Sau96I GGNCC 1 cut(s) 51
SchI GAGTC 1 cut(s) 491
ScrFI CCNGG 1 cut(s) 291
SduI GDGCHC 5 cut(s) 94, 231, 385, 527, 546
SfaNI GCATC 1 cut(s) 631
SinI GGWCC 1 cut(s) 51
SmlI CTYRAG 1 cut(s) 539
SmoI CTYRAG 1 cut(s) 539
Sse9I AATT 5 cut(s) 175, 205, 420, 649, 663
SstI GAGCTC 2 cut(s) 231, 546
StyD4I CCNGG 1 cut(s) 289
StyI CCWWGG 1 cut(s) 94
TaiI ACGT 1 cut(s) 202
TaqI TCGA 1 cut(s) 363
TasI AATT 5 cut(s) 175, 205, 420, 649, 663
TfiI GAWTC 1 cut(s) 404
Tru1I TTAA 1 cut(s) 477
Tru9I TTAA 1 cut(s) 477
TscAI CASTG 3 cut(s) 217, 586, 697
TseI GCWGC 9 cut(s) 105, 128, 163, 395, 431, 468, 654, 678, 681
TspRI CASTG 3 cut(s) 217, 586, 697
VpaK11BI GGWCC 1 cut(s) 51
VspI ATTAAT 1 cut(s) 477
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.