Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0014893

Physical Location & Seq

Genomic Coordinates Forward (+)

18053360 .. 18055040

Gene Structure 1681 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G38620.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGGGAAGGTCACCGTGCTGTGAGAAAGCTCACACAAACAAAGGAGCATGGACGAAAGAAGAGGACGAGAGGCTCGTCGCCTACATTAAAGCTCATGGAGAAGGCTGCTGGAGATCTCTCCCCAAAGCCGCCGGACTTCTTCGCTGTGGCAAGAGCTGCCGTCTCCGGTGGATCAACTATCTCCGGCCTGACCTTAAGCGTGGAAACTTCACCGAGGAAGAAGACGAACTCATCATCAAGCTCCATAGCCTTCTTGGCAACAAATGGTCGCTTATTGCCGGGAGATTACCGGGAAGAACAGATAACGAGATAAAGAACTATTGGAACACGCATATACGAAGAAAGCTTATAAACAGAGGGATTGATCCAACGAGTCATAGACCAATCCAAGAATCATCAGCTTCTCAAGATTCTAAACCTACACAACTAGAACCAGTTACGAGTAATACCATTAATATCTCATTCACTTCTGCTCCAAAGGTCGAAACGTTCCATGAAAGTATAAGCTTTCCGGGAAAATCAGAGAAAATCTCAATGCTTACGTTCAAAGAAGAAAAAGATGAGTGCCCAGTTCAAGAAAAGTTCCCAGATTTGAATCTTGAGCTCAGAATCAGTCTTCCTGATGATGTTGATCGTCTTCAAGGGCATGGAAAGTCAACAACGCCACGTTGTTTCAAGTGCAGCTTAGGGATGATAAACGGCATGGAGTGCAGATGCGGAAGAATGAGATGCGATGTAGTCGGAGGTAGCAGCAAGGGGAGTGACATGAGCAATGGATTTGATTTTTTAGGGTTGGCAAAGAAAGAGACCACTTCTCTTTTGGGCTTTCGAAGCTTGGAGATGAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0006970 GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009737 GO:0009751 GO:0009753 GO:0009889 GO:0009890 GO:0009892 GO:0009962 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010224 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032502 GO:0033993 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043455 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0046677 GO:0046686 GO:0048519 GO:0048523 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1900376 GO:1900377 GO:1900384 GO:1901363 GO:1901700 GO:1902679 GO:1903085 GO:1903086 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2000762 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

282

Amino Acids

31.81

Weight (kDa)

8.91

Isoelectric Point (pI)

45.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	14 - 61	5.2e-16	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	17 - 76	2.5e-12	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	67 - 111	2.6e-19	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	70 - 116	7.6e-10	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0014893)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38620
fragaria_vesca	FvH4_2g01320 FvH4_2g01320
malus_domestica	MD05G1120600.v1.1 MD10G1124100.v1.1
prunus_persica	Prupe.8G164300_v2.0.a1
pyrus_communis	pycom05g11440
rosa_chinensis	RchiOBHm_Chr6g0252211
rosa_laevigata	RLG00000015402
rosa_multiflora	Rmu_ssc0000073.1_g000001
rosa_roxburghii	Rroxscaffold_7G00216240
rosa_rugosa	Rorug05G0506100.1
rosa_samantha	Rh6BG015400 Rh6CG012500 Rh6DG013800
rosa_wichuraiana	Rw6G001640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	350
AciI	CCGC	2 cut(s)	129, 717
AclI	AACGTT	1 cut(s)	488
AclWI	GGATC	2 cut(s)	179, 359
AflII	CTTAAG	1 cut(s)	194
AgsI	TTSAA	5 cut(s)	547, 575, 595, 641, 676
Alw21I	GWGCWC	1 cut(s)	606
Alw26I	GTCTC	2 cut(s)	167, 800
AlwI	GGATC	2 cut(s)	179, 359
AoxI	GGCC	1 cut(s)	185
ApeKI	GCWGC	4 cut(s)	105, 156, 681, 750
AseI	ATTAAT	1 cut(s)	453
AsuC2I	CCSGG	3 cut(s)	280, 291, 513
AsuHPI	GGTGA	2 cut(s)	3, 202
AsuII	TTCGAA	1 cut(s)	829
BaeGI	GKGCMC	1 cut(s)	569
BanII	GRGCYC	1 cut(s)	606
BbsI	GAAGAC	3 cut(s)	228, 608, 629
Bbv12I	GWGCWC	1 cut(s)	606
BbvI	GCAGC	4 cut(s)	92, 143, 693, 762
BceAI	ACGGC	2 cut(s)	144, 715
BcnI	CCSGG	3 cut(s)	280, 291, 513
BcoDI	GTCTC	2 cut(s)	167, 800
BfaI	CTAG	1 cut(s)	428
BfrI	CTTAAG	1 cut(s)	194
BglI	GCCNNNNNGGC	1 cut(s)	255
BglII	AGATCT	1 cut(s)	113
BisI	GCNGC	5 cut(s)	106, 129, 157, 682, 751
BlsI	GCNGC	5 cut(s)	107, 130, 158, 683, 752
Bme1390I	CCNGG	3 cut(s)	280, 291, 513
BmrFI	CCNGG	3 cut(s)	280, 291, 513
BmrI	ACTGGG	1 cut(s)	563
BmsI	GCATC	2 cut(s)	704, 719
BmuI	ACTGGG	1 cut(s)	563
BpiI	GAAGAC	3 cut(s)	228, 608, 629
BplI	GAGNNNNNCTC	2 cut(s)	515, 547
BpmI	CTGGAG	1 cut(s)	130
Bpu10I	CCTNAGC	1 cut(s)	685
Bpu14I	TTCGAA	1 cut(s)	829
BpuEI	CTTGAG	2 cut(s)	390, 620
BpuMI	CCSGG	3 cut(s)	280, 291, 513
BsaBI	GATNNNNATC	2 cut(s)	594, 630
BsaI	GGTCTC	1 cut(s)	800
BsaJI	CCNNGG	1 cut(s)	213
BsaWI	WCCGGW	1 cut(s)	165
BsaXI	ACNNNNNCTCC	2 cut(s)	457, 487
Bse1I	ACTGG	2 cut(s)	434, 569
Bse3DI	GCAATG	1 cut(s)	778
Bse8I	GATNNNNATC	2 cut(s)	594, 630
BseDI	CCNNGG	1 cut(s)	213
BseGI	GGATG	1 cut(s)	696
BseJI	GATNNNNATC	2 cut(s)	594, 630
BseMI	GCAATG	1 cut(s)	778
BseMII	CTCAG	1 cut(s)	619
BseNI	ACTGG	2 cut(s)	434, 569
BseSI	GKGCMC	1 cut(s)	569
BseXI	GCAGC	4 cut(s)	92, 143, 693, 762
BsgI	GTGCAG	2 cut(s)	700, 730
BshFI	GGCC	1 cut(s)	187
BsiHKAI	GWGCWC	1 cut(s)	606
BsiSI	CCGG	6 cut(s)	132, 166, 184, 279, 290, 512
BsmAI	GTCTC	2 cut(s)	167, 800
BsmBI	CGTCTC	1 cut(s)	167
BsnI	GGCC	1 cut(s)	187
Bso31I	GGTCTC	1 cut(s)	800
Bsp119I	TTCGAA	1 cut(s)	829
Bsp1286I	GDGCHC	2 cut(s)	569, 606
Bsp143I	GATC	4 cut(s)	113, 171, 364, 631
BspACI	CCGC	2 cut(s)	129, 717
BspANI	GGCC	1 cut(s)	187
BspCNI	CTCAG	1 cut(s)	618
BspPI	GGATC	2 cut(s)	179, 359
BspT104I	TTCGAA	1 cut(s)	829
BspTI	CTTAAG	1 cut(s)	194
BspTNI	GGTCTC	1 cut(s)	800
BsrDI	GCAATG	1 cut(s)	778
BsrI	ACTGG	2 cut(s)	434, 569
BssECI	CCNNGG	1 cut(s)	213
BssMI	GATC	4 cut(s)	113, 171, 364, 631
Bst4CI	ACNGT	1 cut(s)	15
Bst6I	CTCTTC	1 cut(s)	54
BstAFI	CTTAAG	1 cut(s)	194
BstAPI	GCANNNNNTGC	2 cut(s)	156, 708
BstBI	TTCGAA	1 cut(s)	829
BstDEI	CTNAG	2 cut(s)	605, 685
BstEII	GGTNACC	1 cut(s)	9
BstF5I	GGATG	1 cut(s)	696
BstKTI	GATC	4 cut(s)	116, 174, 367, 634
BstMAI	GTCTC	2 cut(s)	167, 800
BstMBI	GATC	4 cut(s)	113, 171, 364, 631
BstMWI	GCNNNNNNNGC	4 cut(s)	156, 255, 708, 831
BstPI	GGTNACC	1 cut(s)	9
BstSCI	CCNGG	3 cut(s)	278, 289, 511
BstSLI	GKGCMC	1 cut(s)	569
BstV1I	GCAGC	4 cut(s)	92, 143, 693, 762
BstV2I	GAAGAC	3 cut(s)	228, 608, 629
BstX2I	RGATCY	1 cut(s)	113
BstYI	RGATCY	1 cut(s)	113
BsuRI	GGCC	1 cut(s)	187
BtgZI	GCGATG	1 cut(s)	747
BtsCI	GGATG	1 cut(s)	696
CviAII	CATG	6 cut(s)	48, 95, 494, 647, 703, 766
DdeI	CTNAG	2 cut(s)	605, 685
DpnI	GATC	4 cut(s)	115, 173, 366, 633
DpnII	GATC	4 cut(s)	113, 171, 364, 631
Eam1104I	CTCTTC	1 cut(s)	54
EarI	CTCTTC	1 cut(s)	54
Ecl136II	GAGCTC	1 cut(s)	604
Eco24I	GRGCYC	1 cut(s)	606
Eco31I	GGTCTC	1 cut(s)	800
Eco53kI	GAGCTC	1 cut(s)	604
Eco91I	GGTNACC	1 cut(s)	9
EcoICRI	GAGCTC	1 cut(s)	604
EcoO65I	GGTNACC	1 cut(s)	9
EcoT38I	GRGCYC	1 cut(s)	606
Esp3I	CGTCTC	1 cut(s)	167
FaeI	CATG	6 cut(s)	51, 98, 497, 650, 706, 769
FalI	AAGNNNNNCTT	2 cut(s)	668, 700
FatI	CATG	6 cut(s)	47, 94, 493, 646, 702, 765
Fnu4HI	GCNGC	5 cut(s)	106, 129, 157, 682, 751
FokI	GGATG	1 cut(s)	703
FriOI	GRGCYC	1 cut(s)	606
Fsp4HI	GCNGC	5 cut(s)	106, 129, 157, 682, 751
FspBI	CTAG	1 cut(s)	428
GluI	GCNGC	5 cut(s)	106, 129, 157, 682, 751
GsuI	CTGGAG	1 cut(s)	130
HaeIII	GGCC	1 cut(s)	187
HapII	CCGG	6 cut(s)	132, 166, 184, 279, 290, 512
Hin1II	CATG	6 cut(s)	51, 98, 497, 650, 706, 769
HincII	GTYRAC	1 cut(s)	657
HindII	GTYRAC	1 cut(s)	657
HindIII	AAGCTT	3 cut(s)	344, 505, 832
HinfI	GANTC	5 cut(s)	373, 392, 410, 595, 609
HpaII	CCGG	6 cut(s)	132, 166, 184, 279, 290, 512
HphI	GGTGA	2 cut(s)	3, 202
Hpy166II	GTNNAC	1 cut(s)	657
Hpy188I	TCNGA	3 cut(s)	523, 608, 743
Hpy188III	TCNNGA	4 cut(s)	407, 575, 599, 620
Hpy8I	GTNNAC	1 cut(s)	657
Hpy99I	CGWCG	1 cut(s)	80
HpyAV	CCTTC	2 cut(s)	95, 260
HpyCH4III	ACNGT	1 cut(s)	15
HpyCH4IV	ACGT	3 cut(s)	488, 542, 667
HpyCH4V	TGCA	2 cut(s)	681, 711
HpyF10VI	GCNNNNNNNGC	4 cut(s)	156, 255, 708, 831
HpyF3I	CTNAG	2 cut(s)	605, 685
HpySE526I	ACGT	3 cut(s)	488, 542, 667
Hsp92II	CATG	6 cut(s)	51, 98, 497, 650, 706, 769
Kzo9I	GATC	4 cut(s)	113, 171, 364, 631
LmnI	GCTCC	3 cut(s)	44, 246, 478
Lsp1109I	GCAGC	4 cut(s)	92, 143, 693, 762
LweI	GCATC	2 cut(s)	704, 719
MaeI	CTAG	1 cut(s)	428
MaeII	ACGT	3 cut(s)	488, 542, 667
MaeIII	GTNAC	3 cut(s)	9, 436, 761
MalI	GATC	4 cut(s)	115, 173, 366, 633
MboI	GATC	4 cut(s)	113, 171, 364, 631
MflI	RGATCY	1 cut(s)	113
MhlI	GDGCHC	2 cut(s)	569, 606
MlyI	GAGTC	1 cut(s)	382
MmeI	TCCRAC	2 cut(s)	392, 721
MnlI	CCTC	5 cut(s)	55, 63, 208, 350, 737
MseI	TTAA	3 cut(s)	87, 195, 453
MspCI	CTTAAG	1 cut(s)	194
MspI	CCGG	6 cut(s)	132, 166, 184, 279, 290, 512
MspR9I	CCNGG	3 cut(s)	280, 291, 513
MwoI	GCNNNNNNNGC	4 cut(s)	156, 255, 708, 831
NciI	CCSGG	3 cut(s)	280, 291, 513
NdeII	GATC	4 cut(s)	113, 171, 364, 631
NlaIII	CATG	6 cut(s)	51, 98, 497, 650, 706, 769
NmuCI	GTSAC	2 cut(s)	9, 761
NspV	TTCGAA	1 cut(s)	829
PcsI	WCGNNNNNNNCGW	1 cut(s)	72
PfeI	GAWTC	4 cut(s)	392, 410, 595, 609
PfoI	TCCNGGA	1 cut(s)	511
PkrI	GCNGC	5 cut(s)	107, 130, 158, 683, 752
PleI	GAGTC	1 cut(s)	381
PpsI	GAGTC	1 cut(s)	381
PshBI	ATTAAT	1 cut(s)	453
PsiI	TTATAA	1 cut(s)	350
Psp124BI	GAGCTC	1 cut(s)	606
Psp1406I	AACGTT	1 cut(s)	488
PspEI	GGTNACC	1 cut(s)	9
PsuI	RGATCY	1 cut(s)	113
SacI	GAGCTC	1 cut(s)	606
SaqAI	TTAA	3 cut(s)	87, 195, 453
SatI	GCNGC	5 cut(s)	106, 129, 157, 682, 751
Sau3AI	GATC	4 cut(s)	113, 171, 364, 631
SchI	GAGTC	1 cut(s)	382
ScrFI	CCNGG	3 cut(s)	280, 291, 513
SduI	GDGCHC	2 cut(s)	569, 606
SfaNI	GCATC	2 cut(s)	704, 719
SfuI	TTCGAA	1 cut(s)	829
SmlI	CTYRAG	3 cut(s)	194, 405, 599
SmoI	CTYRAG	3 cut(s)	194, 405, 599
SsiI	CCGC	2 cut(s)	129, 717
SspMI	CTAG	1 cut(s)	428
SstI	GAGCTC	1 cut(s)	606
StyD4I	CCNGG	3 cut(s)	278, 289, 511
TaaI	ACNGT	1 cut(s)	15
TaiI	ACGT	3 cut(s)	491, 545, 670
TaqI	TCGA	2 cut(s)	483, 829
TauI	GCSGC	1 cut(s)	131
TfiI	GAWTC	4 cut(s)	392, 410, 595, 609
Tru1I	TTAA	3 cut(s)	87, 195, 453
Tru9I	TTAA	3 cut(s)	87, 195, 453
TseFI	GTSAC	2 cut(s)	9, 761
TseI	GCWGC	4 cut(s)	105, 156, 681, 750
Tsp45I	GTSAC	2 cut(s)	9, 761
TspDTI	ATGAA	1 cut(s)	510
Vha464I	CTTAAG	1 cut(s)	194
VspI	ATTAAT	1 cut(s)	453
XcmI	CCANNNNNNNNNTGG	2 cut(s)	251, 817
XspI	CTAG	1 cut(s)	428

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.