MD10G1124100.v1.1
MYB Family

Myb-related protein 308-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0014893
Physical Location & Seq
Reverse (-)
20160578 .. 20162198
1621 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1124100.v1.1.491

Sequence Viewer

Length: 768 bp
ATGGGAAGATCTCCTTGCTGTGAGAAGGCTCACACCAACAAAGGAGCTTGGACCAAGGAAGAAGACGACCGCCTCATTGCCTACATCAGAGCTCACGGCGAGGGTTGCTGGAGGTCACTGCCCAAGGCGGCGGGCCTCCTCCGATGCGGGAAGAGCTGCAGGCTGCGGTGGATCAACTACCTTAGACCTGATCTCAAGCGTGGCAATTTCACTGAAGAAGAAGATGAGCTCATCATCAAACTCCATAGCCTCCTCGGAAACAAATGGTCTTTGATAGCTGGAAGGCTGCCTGGAAGAACAGACAATGAGATAAAGAACTACTGGAACACCCACATAAGAAGGAAGCTTTTGACCAGAGGGATTGACCCCACAACTCACAGGCCACTCAATGAGACACCTCAGGAATCTGCAACCACAATTTCTTTTGCTGCCGCTTCTGCAAATATCAAAGAAGAGGATAAAAAAATCTCCATAACCAATGGGCTTGTTTGCAAAGATTCAAAAAACCCAGTTCAGGAAAGGTGCCCTGACTTGAATCTTGACCTTCAAATCAGCCCTCCCTGCCAGCCTCAGCAACCCAGTGACGGTTTGAAGAGTGGAGGGCGGGGACTCTGCTTTTCTTGCAGTTTGGGGCTTCAAGATGCAAAGAACTGCAGCTGTGGGAGGGATGCTATTGGTGGCGCCACCAGTGGCACCACCAATATTGGTTATGATTTCTTGGGGTTGAAAAATGGGGTCTTGGATTACAGAAGCTTGGAGATGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

256

Amino Acids

28.27

Weight (kDa)

8.89

Isoelectric Point (pI)

49.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 14 - 61 6.5e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 17 - 75 3.5e-12 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 67 - 111 2.2e-19 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 70 - 115 8.4e-10 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014893)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38620
fragaria_vesca FvH4_2g01320 FvH4_2g01320
malus_domestica MD05G1120600.v1.1 MD10G1124100.v1.1
prunus_persica Prupe.8G164300_v2.0.a1
pyrus_communis pycom05g11440
rosa_chinensis RchiOBHm_Chr6g0252211
rosa_laevigata RLG00000015402
rosa_multiflora Rmu_ssc0000073.1_g000001
rosa_roxburghii Rroxscaffold_7G00216240
rosa_rugosa Rorug05G0506100.1
rosa_samantha Rh6BG015400 Rh6CG012500 Rh6DG013800
rosa_wichuraiana Rw6G001640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 522, 680, 692
AciI CCGC 7 cut(s) 70, 128, 131, 147, 166, 432, 604
AclWI GGATC 1 cut(s) 179
AcuI CTGAAG 1 cut(s) 234
AcyI GRCGYC 1 cut(s) 681
AfiI CCNNNNNNNGG 2 cut(s) 514, 584
AgsI TTSAA 6 cut(s) 501, 535, 548, 592, 638, 727
AjnI CCWGG 1 cut(s) 289
AluBI AGCT 8 cut(s) 47, 92, 156, 229, 278, 346, 657, 753
AluI AGCT 8 cut(s) 47, 92, 156, 229, 278, 346, 657, 753
Alw21I GWGCWC 2 cut(s) 94, 231
Alw26I GTCTC 1 cut(s) 386
AlwI GGATC 1 cut(s) 179
AoxI GGCC 2 cut(s) 133, 380
ApeKI GCWGC 5 cut(s) 156, 163, 286, 428, 654
AspLEI GCGC 1 cut(s) 683
AspS9I GGNCC 2 cut(s) 51, 133
AvaII GGWCC 1 cut(s) 51
AxyI CCTNAGG 1 cut(s) 399
BaeGI GKGCMC 1 cut(s) 527
BanI GGYRCC 3 cut(s) 522, 680, 692
BanII GRGCYC 2 cut(s) 94, 231
BbsI GAAGAC 1 cut(s) 69
Bbv12I GWGCWC 2 cut(s) 94, 231
BbvCI CCTCAGC 1 cut(s) 570
BbvI GCAGC 5 cut(s) 143, 150, 273, 415, 666
BceAI ACGGC 1 cut(s) 112
BciT130I CCWGG 1 cut(s) 291
BcoDI GTCTC 1 cut(s) 386
BfmI CTRYAG 2 cut(s) 157, 652
BfoI RGCGCY 1 cut(s) 684
BglII AGATCT 1 cut(s) 8
BisI GCNGC 7 cut(s) 129, 157, 164, 287, 429, 432, 655
BlsI GCNGC 7 cut(s) 130, 158, 165, 288, 430, 433, 656
Bme1390I CCNGG 1 cut(s) 291
Bme18I GGWCC 1 cut(s) 51
BmgT120I GGNCC 2 cut(s) 51, 133
BmiI GGNNCC 3 cut(s) 524, 682, 694
BmrFI CCNGG 1 cut(s) 291
BmrI ACTGGG 2 cut(s) 503, 573
BmsI GCATC 3 cut(s) 134, 631, 658
BmuI ACTGGG 2 cut(s) 503, 573
BpiI GAAGAC 1 cut(s) 69
BpmI CTGGAG 1 cut(s) 130
Bpu10I CCTNAGC 1 cut(s) 570
BpuEI CTTGAG 1 cut(s) 179
BsaHI GRCGYC 1 cut(s) 681
BsaJI CCNNGG 3 cut(s) 54, 123, 253
Bsc4I CCNNNNNNNGG 2 cut(s) 514, 584
Bse1I ACTGG 4 cut(s) 326, 509, 579, 687
Bse21I CCTNAGG 1 cut(s) 399
Bse3DI GCAATG 1 cut(s) 75
BseBI CCWGG 1 cut(s) 291
BseDI CCNNGG 3 cut(s) 54, 123, 253
BseGI GGATG 1 cut(s) 673
BseLI CCNNNNNNNGG 2 cut(s) 514, 584
BseMI GCAATG 1 cut(s) 75
BseMII CTCAG 2 cut(s) 413, 584
BseNI ACTGG 4 cut(s) 326, 509, 579, 687
BseRI GAGGAG 2 cut(s) 128, 242
BseSI GKGCMC 1 cut(s) 527
BseXI GCAGC 5 cut(s) 143, 150, 273, 415, 666
Bsh1285I CGRYCG 1 cut(s) 70
BshFI GGCC 2 cut(s) 135, 382
BshNI GGYRCC 3 cut(s) 522, 680, 692
BsiEI CGRYCG 1 cut(s) 70
BsiHKAI GWGCWC 2 cut(s) 94, 231
BslFI GGGAC 1 cut(s) 621
BslI CCNNNNNNNGG 2 cut(s) 514, 584
BsmAI GTCTC 1 cut(s) 386
BsmFI GGGAC 1 cut(s) 621
BsnI GGCC 2 cut(s) 135, 382
Bsp1286I GDGCHC 3 cut(s) 94, 231, 527
Bsp143I GATC 3 cut(s) 8, 171, 190
BspACI CCGC 7 cut(s) 70, 128, 131, 147, 166, 432, 604
BspANI GGCC 2 cut(s) 135, 382
BspCNI CTCAG 2 cut(s) 412, 583
BspLI GGNNCC 3 cut(s) 524, 682, 694
BspMAI CTGCAG 2 cut(s) 161, 656
BspPI GGATC 1 cut(s) 179
BspQI GCTCTTC 1 cut(s) 146
BspT107I GGYRCC 3 cut(s) 522, 680, 692
BsrDI GCAATG 1 cut(s) 75
BsrI ACTGG 4 cut(s) 326, 509, 579, 687
BssECI CCNNGG 3 cut(s) 54, 123, 253
BssMI GATC 3 cut(s) 8, 171, 190
BssNI GRCGYC 1 cut(s) 681
BssT1I CCWWGG 2 cut(s) 54, 123
Bst2UI CCWGG 1 cut(s) 291
Bst4CI ACNGT 1 cut(s) 587
Bst6I CTCTTC 3 cut(s) 146, 447, 587
BstACI GRCGYC 1 cut(s) 681
BstC8I GCNNGC 3 cut(s) 133, 161, 566
BstDEI CTNAG 3 cut(s) 182, 399, 570
BstF5I GGATG 1 cut(s) 673
BstH2I RGCGCY 1 cut(s) 684
BstHHI GCGC 1 cut(s) 683
BstKTI GATC 3 cut(s) 11, 174, 193
BstMAI GTCTC 1 cut(s) 386
BstMBI GATC 3 cut(s) 8, 171, 190
BstMCI CGRYCG 1 cut(s) 70
BstMWI GCNNNNNNNGC 5 cut(s) 105, 153, 437, 561, 621
BstNI CCWGG 1 cut(s) 291
BstSCI CCNGG 1 cut(s) 289
BstSFI CTRYAG 2 cut(s) 157, 652
BstSLI GKGCMC 1 cut(s) 527
BstV1I GCAGC 5 cut(s) 143, 150, 273, 415, 666
BstV2I GAAGAC 1 cut(s) 69
BstX2I RGATCY 1 cut(s) 8
BstYI RGATCY 1 cut(s) 8
Bsu36I CCTNAGG 1 cut(s) 399
BsuRI GGCC 2 cut(s) 135, 382
BtsCI GGATG 1 cut(s) 673
BtsI GCAGTG 1 cut(s) 116
BtsIMutI CAGTG 4 cut(s) 116, 210, 586, 694
Cac8I GCNNGC 3 cut(s) 133, 161, 566
CfoI GCGC 1 cut(s) 683
Cfr13I GGNCC 2 cut(s) 51, 133
CspCI CAANNNNNGTGG 2 cut(s) 685, 720
DdeI CTNAG 3 cut(s) 182, 399, 570
DinI GGCGCC 1 cut(s) 682
DpnI GATC 3 cut(s) 10, 173, 192
DpnII GATC 3 cut(s) 8, 171, 190
Eam1104I CTCTTC 3 cut(s) 146, 447, 587
EarI CTCTTC 3 cut(s) 146, 447, 587
Ecl136II GAGCTC 2 cut(s) 92, 229
Eco130I CCWWGG 2 cut(s) 54, 123
Eco24I GRGCYC 2 cut(s) 94, 231
Eco47I GGWCC 1 cut(s) 51
Eco53kI GAGCTC 2 cut(s) 92, 229
Eco57I CTGAAG 1 cut(s) 234
Eco81I CCTNAGG 1 cut(s) 399
EcoICRI GAGCTC 2 cut(s) 92, 229
EcoRII CCWGG 1 cut(s) 289
EcoT14I CCWWGG 2 cut(s) 54, 123
EcoT38I GRGCYC 2 cut(s) 94, 231
EgeI GGCGCC 1 cut(s) 682
EheI GGCGCC 1 cut(s) 682
ErhI CCWWGG 2 cut(s) 54, 123
FaiI YATR 4 cut(s) 246, 335, 473, 711
FalI AAGNNNNNCTT 1 cut(s) 30
FaqI GGGAC 1 cut(s) 621
FauI CCCGC 3 cut(s) 124, 140, 597
Fnu4HI GCNGC 7 cut(s) 129, 157, 164, 287, 429, 432, 655
FokI GGATG 1 cut(s) 680
FriOI GRGCYC 2 cut(s) 94, 231
Fsp4HI GCNGC 7 cut(s) 129, 157, 164, 287, 429, 432, 655
GlaI GCGC 1 cut(s) 682
GluI GCNGC 7 cut(s) 129, 157, 164, 287, 429, 432, 655
GsuI CTGGAG 1 cut(s) 130
HaeII RGCGCY 1 cut(s) 684
HaeIII GGCC 2 cut(s) 135, 382
HhaI GCGC 1 cut(s) 683
Hin1I GRCGYC 1 cut(s) 681
Hin6I GCGC 1 cut(s) 681
HinP1I GCGC 1 cut(s) 681
HindIII AAGCTT 2 cut(s) 344, 751
HinfI GANTC 4 cut(s) 404, 497, 535, 609
Hpy188I TCNGA 3 cut(s) 89, 143, 257
Hpy188III TCNNGA 4 cut(s) 401, 515, 539, 638
HpyAV CCTTC 4 cut(s) 19, 276, 333, 554
HpyCH4III ACNGT 1 cut(s) 587
HpyCH4V TGCA 7 cut(s) 159, 410, 440, 492, 624, 644, 654
HpyF10VI GCNNNNNNNGC 5 cut(s) 105, 153, 437, 561, 621
HpyF3I CTNAG 3 cut(s) 182, 399, 570
Hsp92I GRCGYC 1 cut(s) 681
HspAI GCGC 1 cut(s) 681
KasI GGCGCC 1 cut(s) 680
Kzo9I GATC 3 cut(s) 8, 171, 190
LguI GCTCTTC 1 cut(s) 146
LmnI GCTCC 1 cut(s) 44
Lsp1109I GCAGC 5 cut(s) 143, 150, 273, 415, 666
LweI GCATC 3 cut(s) 134, 631, 658
MaeIII GTNAC 2 cut(s) 114, 581
MalI GATC 3 cut(s) 10, 173, 192
MboI GATC 3 cut(s) 8, 171, 190
MflI RGATCY 1 cut(s) 8
MhlI GDGCHC 3 cut(s) 94, 231, 527
MluCI AATT 2 cut(s) 205, 417
Mly113I GGCGCC 1 cut(s) 681
MlyI GAGTC 1 cut(s) 603
MspA1I CMGCKG 1 cut(s) 657
MspR9I CCNGG 1 cut(s) 291
MvaI CCWGG 1 cut(s) 291
MwoI GCNNNNNNNGC 5 cut(s) 105, 153, 437, 561, 621
NarI GGCGCC 1 cut(s) 681
NdeII GATC 3 cut(s) 8, 171, 190
NlaIV GGNNCC 3 cut(s) 524, 682, 694
NmuCI GTSAC 2 cut(s) 114, 581
PciSI GCTCTTC 1 cut(s) 146
PfeI GAWTC 3 cut(s) 404, 497, 535
PkrI GCNGC 7 cut(s) 130, 158, 165, 288, 430, 433, 656
PleI GAGTC 1 cut(s) 603
PluTI GGCGCC 1 cut(s) 684
PpsI GAGTC 1 cut(s) 603
Psp124BI GAGCTC 2 cut(s) 94, 231
Psp6I CCWGG 1 cut(s) 289
PspGI CCWGG 1 cut(s) 289
PspN4I GGNNCC 3 cut(s) 524, 682, 694
PspPI GGNCC 2 cut(s) 51, 133
PstI CTGCAG 2 cut(s) 161, 656
PsuI RGATCY 1 cut(s) 8
PvuII CAGCTG 1 cut(s) 657
SacI GAGCTC 2 cut(s) 94, 231
SapI GCTCTTC 1 cut(s) 146
SatI GCNGC 7 cut(s) 129, 157, 164, 287, 429, 432, 655
Sau3AI GATC 3 cut(s) 8, 171, 190
Sau96I GGNCC 2 cut(s) 51, 133
SchI GAGTC 1 cut(s) 603
ScrFI CCNGG 1 cut(s) 291
SduI GDGCHC 3 cut(s) 94, 231, 527
SfaNI GCATC 3 cut(s) 134, 631, 658
SfcI CTRYAG 2 cut(s) 157, 652
SfoI GGCGCC 1 cut(s) 682
SinI GGWCC 1 cut(s) 51
SmlI CTYRAG 1 cut(s) 194
SmoI CTYRAG 1 cut(s) 194
Sse9I AATT 2 cut(s) 205, 417
SsiI CCGC 7 cut(s) 70, 128, 131, 147, 166, 432, 604
SspDI GGCGCC 1 cut(s) 680
SspI AATATT 1 cut(s) 703
SstI GAGCTC 2 cut(s) 94, 231
StyD4I CCNGG 1 cut(s) 289
StyI CCWWGG 2 cut(s) 54, 123
TaaI ACNGT 1 cut(s) 587
TasI AATT 2 cut(s) 205, 417
TauI GCSGC 2 cut(s) 131, 434
TfiI GAWTC 3 cut(s) 404, 497, 535
TscAI CASTG 4 cut(s) 123, 217, 586, 694
TseFI GTSAC 2 cut(s) 114, 581
TseI GCWGC 5 cut(s) 156, 163, 286, 428, 654
Tsp45I GTSAC 2 cut(s) 114, 581
TspRI CASTG 4 cut(s) 123, 217, 586, 694
VpaK11BI GGWCC 1 cut(s) 51
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.