FvH4_2g01320
MYB Family

Myb-related protein 308-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0014893
Physical Location & Seq
Forward (+)
1252745 .. 1255468
2724 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g01320.t2

Sequence Viewer

Length: 801 bp
ATGGGGAGATCTCCATGCTGTGAAAAGGCTCACACGAACAAAGGAGCTTGGACCAAAGAAGAAGATGATCGCCTCATTGCTTATATCCGAGCTCACGGTGAAGGCTGCTGGCGCTCGCTGCCCAAAGCCGCCGGCCTTCTTCGCTGCGGCAAGAGCTGTAGGCTGCGGTGGATCAACTACCTCAGACCGGACCTCAAGCGCGGCAACTTCACTGAAGAAGAAGATGAGCTCATCATCAAGCTCCATAGCCTCCTTGGGAACAAATGGTCTTTGATTGCCGGGAGACTGCCGGGAAGAACAGACAATGAGATAAAGAATTACTGGAATACCCATATAAGAAGGAAGCTTTTGACAAGAGGTATAGACCCTGCAACTCACAGGCCACTCAATGAAACAACAACTCCTACTACTCAGGACTCTGCCACAACCACCACTACTATCTCTTTTGCTGCTTCTTCTGCTATTAAAGAAGAAGATCAGAAAATCAGCACCAGTAGTATTGGGATTGTGAGCAGCAGAGACTCACTGATTAGCCCAGTTCAAGAAAAGTGTCCAGATTTGAATCTTGAGCTTAGAATTAGTCCTCCTAGCCAGATCAAACCAGCTGATCAGTCTTTGAAGAGTGGAGGAAGAAGGGCTTTCTGCTTTTCTTGCAGTATGGGGTTAAAGGACTCAAAGAGTTGCAGTAGCTGTGGGATTGATAATATTGGTGCCACCAGTGCTGGCACTAGTAATATTGCTTATGATTTCTTGGGGTTGAAAAATGGGGTGTTGGATTACAGAAGCTTGGAGATGAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

267

Amino Acids

29.41

Weight (kDa)

9.08

Isoelectric Point (pI)

55.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 14 - 61 7e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 17 - 76 1.6e-12 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 67 - 111 2.3e-19 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 70 - 116 7.9e-10 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014893)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38620
fragaria_vesca FvH4_2g01320 FvH4_2g01320
malus_domestica MD05G1120600.v1.1 MD10G1124100.v1.1
prunus_persica Prupe.8G164300_v2.0.a1
pyrus_communis pycom05g11440
rosa_chinensis RchiOBHm_Chr6g0252211
rosa_laevigata RLG00000015402
rosa_multiflora Rmu_ssc0000073.1_g000001
rosa_roxburghii Rroxscaffold_7G00216240
rosa_rugosa Rorug05G0506100.1
rosa_samantha Rh6BG015400 Rh6CG012500 Rh6DG013800
rosa_wichuraiana Rw6G001640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 710
AccII CGCG 1 cut(s) 201
AciI CCGC 4 cut(s) 129, 147, 166, 201
AclWI GGATC 1 cut(s) 179
AcuI CTGAAG 1 cut(s) 234
AfiI CCNNNNNNNGG 1 cut(s) 187
AgsI TTSAA 4 cut(s) 542, 562, 619, 760
AhlI ACTAGT 1 cut(s) 728
Alw21I GWGCWC 2 cut(s) 94, 231
Alw26I GTCTC 2 cut(s) 277, 513
AlwI GGATC 1 cut(s) 179
AlwNI CAGNNNCTG 1 cut(s) 690
AoxI GGCC 2 cut(s) 133, 380
ApeKI GCWGC 6 cut(s) 105, 118, 144, 163, 449, 513
AspLEI GCGC 2 cut(s) 114, 201
AspS9I GGNCC 2 cut(s) 51, 190
AsuC2I CCSGG 2 cut(s) 280, 291
AsuHPI GGTGA 1 cut(s) 110
AvaII GGWCC 2 cut(s) 51, 190
BanI GGYRCC 1 cut(s) 710
BanII GRGCYC 2 cut(s) 94, 231
Bbv12I GWGCWC 2 cut(s) 94, 231
BbvI GCAGC 6 cut(s) 92, 105, 131, 150, 436, 525
BclI TGATCA 1 cut(s) 607
BcnI CCSGG 2 cut(s) 280, 291
BcoDI GTCTC 2 cut(s) 277, 513
BcuI ACTAGT 1 cut(s) 728
BfaI CTAG 2 cut(s) 588, 729
BfmI CTRYAG 1 cut(s) 157
BfoI RGCGCY 1 cut(s) 115
BglII AGATCT 1 cut(s) 8
BisI GCNGC 9 cut(s) 106, 119, 129, 145, 148, 164, 202, 450, 514
BlsI GCNGC 9 cut(s) 107, 120, 130, 146, 149, 165, 203, 451, 515
Bme1390I CCNGG 2 cut(s) 280, 291
Bme18I GGWCC 2 cut(s) 51, 190
BmgT120I GGNCC 2 cut(s) 51, 190
BmiI GGNNCC 1 cut(s) 712
BmrFI CCNGG 2 cut(s) 280, 291
BmrI ACTGGG 1 cut(s) 530
BmuI ACTGGG 1 cut(s) 530
BpuEI CTTGAG 2 cut(s) 179, 587
BpuMI CCSGG 2 cut(s) 280, 291
BsaBI GATNNNNATC 1 cut(s) 561
BsaJI CCNNGG 1 cut(s) 253
BsaWI WCCGGW 1 cut(s) 187
BsaXI ACNNNNNCTCC 2 cut(s) 385, 415
Bsc4I CCNNNNNNNGG 1 cut(s) 187
Bse118I RCCGGY 1 cut(s) 131
Bse1I ACTGG 4 cut(s) 326, 492, 536, 717
Bse3DI GCAATG 1 cut(s) 75
Bse8I GATNNNNATC 1 cut(s) 561
BseDI CCNNGG 1 cut(s) 253
BseJI GATNNNNATC 1 cut(s) 561
BseLI CCNNNNNNNGG 1 cut(s) 187
BseMI GCAATG 1 cut(s) 75
BseMII CTCAG 2 cut(s) 196, 425
BseNI ACTGG 4 cut(s) 326, 492, 536, 717
BseXI GCAGC 6 cut(s) 92, 105, 131, 150, 436, 525
Bsh1236I CGCG 1 cut(s) 201
BshFI GGCC 2 cut(s) 135, 382
BshNI GGYRCC 1 cut(s) 710
BsiHKAI GWGCWC 2 cut(s) 94, 231
BsiSI CCGG 4 cut(s) 132, 188, 279, 290
BslI CCNNNNNNNGG 1 cut(s) 187
BsmAI GTCTC 2 cut(s) 277, 513
BsnI GGCC 2 cut(s) 135, 382
Bsp1286I GDGCHC 2 cut(s) 94, 231
Bsp143I GATC 6 cut(s) 8, 67, 171, 475, 594, 607
BspACI CCGC 4 cut(s) 129, 147, 166, 201
BspANI GGCC 2 cut(s) 135, 382
BspCNI CTCAG 2 cut(s) 195, 424
BspFNI CGCG 1 cut(s) 201
BspLI GGNNCC 1 cut(s) 712
BspPI GGATC 1 cut(s) 179
BspT107I GGYRCC 1 cut(s) 710
BsrDI GCAATG 1 cut(s) 75
BsrFI RCCGGY 1 cut(s) 131
BsrI ACTGG 4 cut(s) 326, 492, 536, 717
BssAI RCCGGY 1 cut(s) 131
BssECI CCNNGG 1 cut(s) 253
BssMI GATC 6 cut(s) 8, 67, 171, 475, 594, 607
BssT1I CCWWGG 1 cut(s) 253
Bst4CI ACNGT 1 cut(s) 98
Bst6I CTCTTC 1 cut(s) 614
BstC8I GCNNGC 4 cut(s) 110, 116, 133, 724
BstDEI CTNAG 3 cut(s) 182, 411, 572
BstFNI CGCG 1 cut(s) 201
BstH2I RGCGCY 1 cut(s) 115
BstHHI GCGC 2 cut(s) 114, 201
BstKTI GATC 6 cut(s) 11, 70, 174, 478, 597, 610
BstMAI GTCTC 2 cut(s) 277, 513
BstMBI GATC 6 cut(s) 8, 67, 171, 475, 594, 607
BstMWI GCNNNNNNNGC 7 cut(s) 111, 118, 141, 153, 458, 651, 719
BstSCI CCNGG 2 cut(s) 278, 289
BstSFI CTRYAG 1 cut(s) 157
BstUI CGCG 1 cut(s) 201
BstV1I GCAGC 6 cut(s) 92, 105, 131, 150, 436, 525
BstX2I RGATCY 1 cut(s) 8
BstYI RGATCY 1 cut(s) 8
BsuRI GGCC 2 cut(s) 135, 382
BtsIMutI CAGTG 3 cut(s) 210, 524, 724
Cac8I GCNNGC 4 cut(s) 110, 116, 133, 724
CaiI CAGNNNCTG 1 cut(s) 690
CfoI GCGC 2 cut(s) 114, 201
Cfr10I RCCGGY 1 cut(s) 131
Cfr13I GGNCC 2 cut(s) 51, 190
CviAII CATG 1 cut(s) 15
DdeI CTNAG 3 cut(s) 182, 411, 572
DpnI GATC 6 cut(s) 10, 69, 173, 477, 596, 609
DpnII GATC 6 cut(s) 8, 67, 171, 475, 594, 607
Eam1104I CTCTTC 1 cut(s) 614
EarI CTCTTC 1 cut(s) 614
Ecl136II GAGCTC 2 cut(s) 92, 229
Eco130I CCWWGG 1 cut(s) 253
Eco24I GRGCYC 2 cut(s) 94, 231
Eco47I GGWCC 2 cut(s) 51, 190
Eco53kI GAGCTC 2 cut(s) 92, 229
Eco57I CTGAAG 1 cut(s) 234
EcoICRI GAGCTC 2 cut(s) 92, 229
EcoT14I CCWWGG 1 cut(s) 253
EcoT38I GRGCYC 2 cut(s) 94, 231
ErhI CCWWGG 1 cut(s) 253
FaeI CATG 1 cut(s) 18
FaiI YATR 8 cut(s) 16, 84, 246, 333, 335, 362, 659, 744
FalI AAGNNNNNCTT 2 cut(s) 622, 654
FatI CATG 1 cut(s) 14
FbaI TGATCA 1 cut(s) 607
Fnu4HI GCNGC 9 cut(s) 106, 119, 129, 145, 148, 164, 202, 450, 514
FriOI GRGCYC 2 cut(s) 94, 231
Fsp4HI GCNGC 9 cut(s) 106, 119, 129, 145, 148, 164, 202, 450, 514
FspBI CTAG 2 cut(s) 588, 729
GlaI GCGC 2 cut(s) 113, 200
GluI GCNGC 9 cut(s) 106, 119, 129, 145, 148, 164, 202, 450, 514
HaeII RGCGCY 1 cut(s) 115
HaeIII GGCC 2 cut(s) 135, 382
HapII CCGG 4 cut(s) 132, 188, 279, 290
HhaI GCGC 2 cut(s) 114, 201
Hin1II CATG 1 cut(s) 18
Hin6I GCGC 2 cut(s) 112, 199
HinP1I GCGC 2 cut(s) 112, 199
HindIII AAGCTT 2 cut(s) 344, 784
HinfI GANTC 4 cut(s) 416, 521, 562, 671
HpaII CCGG 4 cut(s) 132, 188, 279, 290
HphI GGTGA 1 cut(s) 110
Hpy188I TCNGA 3 cut(s) 89, 185, 480
Hpy188III TCNNGA 4 cut(s) 413, 542, 554, 566
HpyAV CCTTC 4 cut(s) 95, 146, 333, 627
HpyCH4III ACNGT 1 cut(s) 98
HpyCH4V TGCA 3 cut(s) 371, 654, 684
HpyF10VI GCNNNNNNNGC 7 cut(s) 111, 118, 141, 153, 458, 651, 719
HpyF3I CTNAG 3 cut(s) 182, 411, 572
Hsp92II CATG 1 cut(s) 18
HspAI GCGC 2 cut(s) 112, 199
KroI GCCGGC 1 cut(s) 131
KroNI GCCGGC 1 cut(s) 133
Ksp22I TGATCA 1 cut(s) 607
Kzo9I GATC 6 cut(s) 8, 67, 171, 475, 594, 607
LmnI GCTCC 2 cut(s) 44, 246
Lsp1109I GCAGC 6 cut(s) 92, 105, 131, 150, 436, 525
MaeI CTAG 2 cut(s) 588, 729
MalI GATC 6 cut(s) 10, 69, 173, 477, 596, 609
MboI GATC 6 cut(s) 8, 67, 171, 475, 594, 607
MflI RGATCY 1 cut(s) 8
MhlI GDGCHC 2 cut(s) 94, 231
MluCI AATT 2 cut(s) 316, 576
MlyI GAGTC 3 cut(s) 410, 515, 665
MmeI TCCRAC 1 cut(s) 753
MnlI CCTC 7 cut(s) 83, 191, 203, 260, 350, 594, 620
MroNI GCCGGC 1 cut(s) 131
MseI TTAA 2 cut(s) 465, 665
MspA1I CMGCKG 1 cut(s) 605
MspI CCGG 4 cut(s) 132, 188, 279, 290
MspR9I CCNGG 2 cut(s) 280, 291
MvnI CGCG 1 cut(s) 201
MwoI GCNNNNNNNGC 7 cut(s) 111, 118, 141, 153, 458, 651, 719
NaeI GCCGGC 1 cut(s) 133
NciI CCSGG 2 cut(s) 280, 291
NdeII GATC 6 cut(s) 8, 67, 171, 475, 594, 607
NgoMIV GCCGGC 1 cut(s) 131
NlaIII CATG 1 cut(s) 18
NlaIV GGNNCC 1 cut(s) 712
PdiI GCCGGC 1 cut(s) 133
PfeI GAWTC 1 cut(s) 562
PkrI GCNGC 9 cut(s) 107, 120, 130, 146, 149, 165, 203, 451, 515
PleI GAGTC 3 cut(s) 410, 515, 665
PpsI GAGTC 3 cut(s) 410, 515, 665
Psp124BI GAGCTC 2 cut(s) 94, 231
PspN4I GGNNCC 1 cut(s) 712
PspPI GGNCC 2 cut(s) 51, 190
PstNI CAGNNNCTG 1 cut(s) 690
PsuI RGATCY 1 cut(s) 8
PvuII CAGCTG 1 cut(s) 605
SacI GAGCTC 2 cut(s) 94, 231
SaqAI TTAA 2 cut(s) 465, 665
SatI GCNGC 9 cut(s) 106, 119, 129, 145, 148, 164, 202, 450, 514
Sau3AI GATC 6 cut(s) 8, 67, 171, 475, 594, 607
Sau96I GGNCC 2 cut(s) 51, 190
SchI GAGTC 3 cut(s) 410, 515, 665
ScrFI CCNGG 2 cut(s) 280, 291
SduI GDGCHC 2 cut(s) 94, 231
SfcI CTRYAG 1 cut(s) 157
SinI GGWCC 2 cut(s) 51, 190
SmlI CTYRAG 2 cut(s) 194, 566
SmoI CTYRAG 2 cut(s) 194, 566
SpeI ACTAGT 1 cut(s) 728
Sse9I AATT 2 cut(s) 316, 576
SsiI CCGC 4 cut(s) 129, 147, 166, 201
SspI AATATT 2 cut(s) 706, 736
SspMI CTAG 2 cut(s) 588, 729
SstI GAGCTC 2 cut(s) 94, 231
StyD4I CCNGG 2 cut(s) 278, 289
StyI CCWWGG 1 cut(s) 253
TaaI ACNGT 1 cut(s) 98
TasI AATT 2 cut(s) 316, 576
TauI GCSGC 3 cut(s) 131, 150, 204
TfiI GAWTC 1 cut(s) 562
Tru1I TTAA 2 cut(s) 465, 665
Tru9I TTAA 2 cut(s) 465, 665
TscAI CASTG 3 cut(s) 217, 531, 724
TseI GCWGC 6 cut(s) 105, 118, 144, 163, 449, 513
TspDTI ATGAA 1 cut(s) 405
TspRI CASTG 3 cut(s) 217, 531, 724
VpaK11BI GGWCC 2 cut(s) 51, 190
XcmI CCANNNNNNNNNTGG 1 cut(s) 251
XspI CTAG 2 cut(s) 588, 729
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.