Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0018620

Physical Location & Seq

Genomic Coordinates Reverse (-)

17344503 .. 17345204

Gene Structure 702 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG165700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGAGCTTCTCGAGCTTGTCGTTCGAGCAAGAGACTTCTAATGTGGATCTCTACTCTGCAATCGGGGTTTTGGTAAAGAGAAGATGGGCTTTCCGGAGACTCTCCTCGGTTATGGGAACCGGGTTTGGAATTGGAATGGTGTACTACGGCATGCCGTTAGCTTTGGGGAGCTTGAACTTAAACCTTTACTTGAGTGTCACGTTAAACGCCTTGTCCGAGCTACATGCTCCTTTAGTCGCTTTTTTCCTAATTGGGAAACTGAACAGGAGAAGCTCGCTCCTGGTTTTCACTTTTCTCAGTGGGGCTTGTAGCATTCTCTTGGTGCTAAAAGGTTTTAATCCTTGGGCAGAGTTACAAATCCGGTTGGAGCCTGTGTCTTTCTTTAGTGGTTGTTCAGCCTTGAATGTGTTGCTTATATTCACGATTGAGCTCTTCCCAACGTGCGTGAGGAACTCGGCTCTCTCGATGGTGAGGCAGGCGTTGGTGTTGGGAGGAGTTTTCAGCCCTATGCTGGCGGCGGCGGGGAGGGCAAACGGCGGGGTTCTGTCGTATGGGGTGTTTGGGGTTGTGGTGGGGGTTTGTGGGTTGTCTGTTGTTTGTTGTTTGTTGTTTGTTGTTTGTTTGCCGGAGACCAGAGGGAGAGGGATTTGTGATACAATGGATGAGTCTACTAATTGCAATGCGGTTCCGCTTGTCGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006820 GO:0006950 GO:0008150 GO:0008509 GO:0008514 GO:0009266 GO:0009409 GO:0009628 GO:0009705 GO:0009987 GO:0015075 GO:0015711 GO:0016020 GO:0016021 GO:0022857 GO:0031090 GO:0031224 GO:0033554 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0070417 GO:0071702 GO:0098588 GO:0098656 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko05231 map05231

Pfam Domains

Protein Families

MFS_1 Sugar_tr

Protein Analysis

233

Amino Acids

24.97

Weight (kDa)

8.63

Isoelectric Point (pI)

41.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018620)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0023291
rosa_multiflora	Rmu_sc0000079.1_g000011 Rmu_sc0001353.1_g000046 Rmu_sc0001981.1_g000013 Rmu_sc0003249.1_g000018 Rmu_sc0008647.1_g000021 Rmu_sc0009409.1_g000013 Rmu_sc0010739.1_g000008
rosa_samantha	Rh5CG179100 Rh5DG165700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	668
AccIII	TCCGGA	1 cut(s)	93
AciI	CCGC	6 cut(s)	515, 518, 521, 537, 683, 689
AclWI	GGATC	1 cut(s)	54
AfaI	GTAC	1 cut(s)	143
AfiI	CCNNNNNNNGG	1 cut(s)	511
AgsI	TTSAA	2 cut(s)	175, 403
AjnI	CCWGG	1 cut(s)	279
AluBI	AGCT	7 cut(s)	6, 15, 161, 171, 220, 273, 430
AluI	AGCT	7 cut(s)	6, 15, 161, 171, 220, 273, 430
Alw21I	GWGCWC	1 cut(s)	432
Alw26I	GTCTC	3 cut(s)	26, 91, 623
AlwI	GGATC	1 cut(s)	54
Ama87I	CYCGRG	1 cut(s)	10
Aor13HI	TCCGGA	1 cut(s)	93
AsuC2I	CCSGG	1 cut(s)	121
AsuHPI	GGTGA	1 cut(s)	481
AvaI	CYCGRG	1 cut(s)	10
BanII	GRGCYC	1 cut(s)	432
Bbv12I	GWGCWC	1 cut(s)	432
BccI	CCATC	2 cut(s)	78, 460
BceAI	ACGGC	3 cut(s)	139, 163, 550
BcgI	CGANNNNNNTGC	2 cut(s)	206, 240
BciT130I	CCWGG	1 cut(s)	281
BcnI	CCSGG	1 cut(s)	121
BcoDI	GTCTC	3 cut(s)	26, 91, 623
BfaI	CTAG	1 cut(s)	700
BisI	GCNGC	2 cut(s)	516, 519
BlsI	GCNGC	2 cut(s)	517, 520
Bme1390I	CCNGG	2 cut(s)	121, 281
BmeT110I	CYCGRG	1 cut(s)	10
BmiI	GGNNCC	3 cut(s)	118, 369, 687
BmrFI	CCNGG	2 cut(s)	121, 281
BpuEI	CTTGAG	1 cut(s)	211
BpuMI	CCSGG	1 cut(s)	121
BsaI	GGTCTC	1 cut(s)	623
BsaJI	CCNNGG	2 cut(s)	105, 341
BsaWI	WCCGGW	2 cut(s)	93, 360
BsaXI	ACNNNNNCTCC	2 cut(s)	359, 389
Bsc4I	CCNNNNNNNGG	1 cut(s)	511
Bse3DI	GCAATG	1 cut(s)	685
BseAI	TCCGGA	1 cut(s)	93
BseBI	CCWGG	1 cut(s)	281
BseDI	CCNNGG	2 cut(s)	105, 341
BseGI	GGATG	1 cut(s)	667
BseLI	CCNNNNNNNGG	1 cut(s)	511
BseMI	GCAATG	1 cut(s)	685
BseMII	CTCAG	1 cut(s)	310
BseRI	GAGGAG	2 cut(s)	94, 507
BsiHKAI	GWGCWC	1 cut(s)	432
BsiHKCI	CYCGRG	1 cut(s)	10
BsiSI	CCGG	4 cut(s)	94, 120, 361, 626
BslI	CCNNNNNNNGG	1 cut(s)	511
BsmAI	GTCTC	3 cut(s)	26, 91, 623
BsmI	GAATGC	1 cut(s)	312
Bso31I	GGTCTC	1 cut(s)	623
BsoBI	CYCGRG	1 cut(s)	10
Bsp1286I	GDGCHC	1 cut(s)	432
Bsp13I	TCCGGA	1 cut(s)	93
Bsp143I	GATC	1 cut(s)	46
BspACI	CCGC	6 cut(s)	515, 518, 521, 537, 683, 689
BspCNI	CTCAG	1 cut(s)	309
BspEI	TCCGGA	1 cut(s)	93
BspLI	GGNNCC	3 cut(s)	118, 369, 687
BspPI	GGATC	1 cut(s)	54
BspQI	GCTCTTC	1 cut(s)	437
BspTNI	GGTCTC	1 cut(s)	623
BsrDI	GCAATG	1 cut(s)	685
BssECI	CCNNGG	2 cut(s)	105, 341
BssMI	GATC	1 cut(s)	46
BssT1I	CCWWGG	1 cut(s)	341
Bst2UI	CCWGG	1 cut(s)	281
Bst6I	CTCTTC	1 cut(s)	437
BstC8I	GCNNGC	4 cut(s)	152, 275, 477, 513
BstDEI	CTNAG	1 cut(s)	296
BstF5I	GGATG	1 cut(s)	667
BstKTI	GATC	1 cut(s)	49
BstMAI	GTCTC	3 cut(s)	26, 91, 623
BstMBI	GATC	1 cut(s)	46
BstMWI	GCNNNNNNNGC	2 cut(s)	12, 527
BstNI	CCWGG	1 cut(s)	281
BstNSI	RCATGY	2 cut(s)	154, 227
BstSCI	CCNGG	2 cut(s)	119, 279
BstX2I	RGATCY	1 cut(s)	46
BstYI	RGATCY	1 cut(s)	46
BtsCI	GGATG	1 cut(s)	667
BtsIMutI	CAGTG	1 cut(s)	304
Cac8I	GCNNGC	4 cut(s)	152, 275, 477, 513
Csp6I	GTAC	1 cut(s)	142
CviAII	CATG	2 cut(s)	151, 224
CviQI	GTAC	1 cut(s)	142
DdeI	CTNAG	1 cut(s)	296
DpnI	GATC	1 cut(s)	48
DpnII	GATC	1 cut(s)	46
Eam1104I	CTCTTC	1 cut(s)	437
EarI	CTCTTC	1 cut(s)	437
Ecl136II	GAGCTC	1 cut(s)	430
Eco130I	CCWWGG	1 cut(s)	341
Eco24I	GRGCYC	1 cut(s)	432
Eco31I	GGTCTC	1 cut(s)	623
Eco53kI	GAGCTC	1 cut(s)	430
Eco88I	CYCGRG	1 cut(s)	10
EcoICRI	GAGCTC	1 cut(s)	430
EcoRII	CCWGG	1 cut(s)	279
EcoT14I	CCWWGG	1 cut(s)	341
EcoT38I	GRGCYC	1 cut(s)	432
ErhI	CCWWGG	1 cut(s)	341
FaeI	CATG	2 cut(s)	154, 227
FaiI	YATR	6 cut(s)	113, 152, 225, 416, 509, 552
FalI	AAGNNNNNCTT	2 cut(s)	73, 105
FatI	CATG	2 cut(s)	150, 223
FauI	CCCGC	2 cut(s)	514, 530
FblI	GTMKAC	1 cut(s)	668
Fnu4HI	GCNGC	2 cut(s)	516, 519
FokI	GGATG	1 cut(s)	674
FriOI	GRGCYC	1 cut(s)	432
Fsp4HI	GCNGC	2 cut(s)	516, 519
FspBI	CTAG	1 cut(s)	700
GluI	GCNGC	2 cut(s)	516, 519
HapII	CCGG	4 cut(s)	94, 120, 361, 626
Hin1II	CATG	2 cut(s)	154, 227
HinfI	GANTC	2 cut(s)	99, 665
HpaII	CCGG	4 cut(s)	94, 120, 361, 626
HphI	GGTGA	1 cut(s)	481
Hpy166II	GTNNAC	2 cut(s)	142, 669
Hpy188I	TCNGA	1 cut(s)	217
Hpy188III	TCNNGA	4 cut(s)	10, 94, 421, 463
Hpy8I	GTNNAC	2 cut(s)	142, 669
HpyCH4IV	ACGT	2 cut(s)	200, 440
HpyCH4V	TGCA	2 cut(s)	59, 678
HpyF10VI	GCNNNNNNNGC	2 cut(s)	12, 527
HpyF3I	CTNAG	1 cut(s)	296
HpySE526I	ACGT	2 cut(s)	200, 440
Hsp92II	CATG	2 cut(s)	154, 227
Kpn2I	TCCGGA	1 cut(s)	93
Kzo9I	GATC	1 cut(s)	46
LguI	GCTCTTC	1 cut(s)	437
LmnI	GCTCC	4 cut(s)	168, 232, 282, 367
MaeI	CTAG	1 cut(s)	700
MaeII	ACGT	2 cut(s)	200, 440
MaeIII	GTNAC	2 cut(s)	196, 351
MalI	GATC	1 cut(s)	48
MboI	GATC	1 cut(s)	46
MboII	GAAGA	2 cut(s)	93, 424
MflI	RGATCY	1 cut(s)	46
MhlI	GDGCHC	1 cut(s)	432
MluCI	AATT	3 cut(s)	129, 249, 673
MlyI	GAGTC	2 cut(s)	93, 674
MmeI	TCCRAC	1 cut(s)	345
MnlI	CCTC	7 cut(s)	115, 441, 465, 485, 519, 629, 635
MroI	TCCGGA	1 cut(s)	93
MseI	TTAA	3 cut(s)	179, 203, 336
MspI	CCGG	4 cut(s)	94, 120, 361, 626
MspR9I	CCNGG	2 cut(s)	121, 281
Mva1269I	GAATGC	1 cut(s)	312
MvaI	CCWGG	1 cut(s)	281
MwoI	GCNNNNNNNGC	2 cut(s)	12, 527
NciI	CCSGG	1 cut(s)	121
NdeII	GATC	1 cut(s)	46
NlaIII	CATG	2 cut(s)	154, 227
NlaIV	GGNNCC	3 cut(s)	118, 369, 687
NmeAIII	GCCGAG	1 cut(s)	434
NmuCI	GTSAC	1 cut(s)	196
NspI	RCATGY	2 cut(s)	154, 227
PaeI	GCATGC	1 cut(s)	154
PaeR7I	CTCGAG	1 cut(s)	10
PciSI	GCTCTTC	1 cut(s)	437
PcsI	WCGNNNNNNNCGW	3 cut(s)	17, 213, 461
PctI	GAATGC	1 cut(s)	312
PkrI	GCNGC	2 cut(s)	517, 520
PleI	GAGTC	2 cut(s)	93, 673
PpsI	GAGTC	2 cut(s)	93, 673
Psp124BI	GAGCTC	1 cut(s)	432
Psp6I	CCWGG	1 cut(s)	279
PspGI	CCWGG	1 cut(s)	279
PspN4I	GGNNCC	3 cut(s)	118, 369, 687
PsuI	RGATCY	1 cut(s)	46
RsaI	GTAC	1 cut(s)	143
RsaNI	GTAC	1 cut(s)	142
SacI	GAGCTC	1 cut(s)	432
SapI	GCTCTTC	1 cut(s)	437
SaqAI	TTAA	3 cut(s)	179, 203, 336
SatI	GCNGC	2 cut(s)	516, 519
Sau3AI	GATC	1 cut(s)	46
SchI	GAGTC	2 cut(s)	93, 674
ScrFI	CCNGG	2 cut(s)	121, 281
SduI	GDGCHC	1 cut(s)	432
Sfr274I	CTCGAG	1 cut(s)	10
SlaI	CTCGAG	1 cut(s)	10
SmlI	CTYRAG	2 cut(s)	10, 190
SmoI	CTYRAG	2 cut(s)	10, 190
SphI	GCATGC	1 cut(s)	154
Sse9I	AATT	3 cut(s)	129, 249, 673
SsiI	CCGC	6 cut(s)	515, 518, 521, 537, 683, 689
SspMI	CTAG	1 cut(s)	700
SstI	GAGCTC	1 cut(s)	432
StyD4I	CCNGG	2 cut(s)	119, 279
StyI	CCWWGG	1 cut(s)	341
TaiI	ACGT	2 cut(s)	203, 443
TaqI	TCGA	3 cut(s)	11, 24, 464
TasI	AATT	3 cut(s)	129, 249, 673
TatI	WGTACW	1 cut(s)	141
TauI	GCSGC	2 cut(s)	518, 521
Tru1I	TTAA	3 cut(s)	179, 203, 336
Tru9I	TTAA	3 cut(s)	179, 203, 336
TscAI	CASTG	1 cut(s)	304
TseFI	GTSAC	1 cut(s)	196
Tsp45I	GTSAC	1 cut(s)	196
TspRI	CASTG	1 cut(s)	304
XceI	RCATGY	2 cut(s)	154, 227
XhoI	CTCGAG	1 cut(s)	10
XmiI	GTMKAC	1 cut(s)	668
XspI	CTAG	1 cut(s)	700

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.