Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001981.1

Orthogroup ID

OG0018620

Physical Location & Seq

Genomic Coordinates Reverse (-)

42110 .. 43951

Gene Structure 1842 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001981.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1842 bp

atgaataccagtcgattggataattgtctcctctccaacttctgcaatctcatcaccatgcagttagatgatactaactatgtgacttggagatttgtgctagagtctatgttggtagggtgtgatcttatggggtatattgatggatctattccttgtcctccacaatataaaatcacaaaagagactggtattacccctaaggttacagaagagtataaagaatggaggaagcatgattttgctataatgactctactcgctagtactttgtcatctggtgctctttcttttattgttgggagcaaaacctcaaaagaagtctggtattcactttatgagaggtatgctaaactttcaaagttcaaagctttcgagctccaggcctcaatgcagaaaattcggaaaggtaaagatagtattgacaagtatatggaacgttttaaaactgttcaggaccaactctctacttctggagttttcattcctgatgaagatatagtgtttctgatcctaaatggattgcatgttgactttgcggctattaagactgtcatcagagttcgaacaacgccaatatctctaagcgagcttcgcacaatgttattggatgttgagtccgatatagttcaagaatcaagatcatttgctgctacttccatgctccaacacaaagcactgccatcgtcttctcttacagctatgattgcacaaaatattcttgccaattcatctcaaagtatgcaatacgggataccaagtacagggccatcatctcaagcaatctttccatcccattatactggatattcttcaatgacacattctctacaaactgctgcatcaaatgttggtttcttgcctaatgatactaatctgattccaggtataccttcttataaccattacaatacatcatctcgtgcctccaatgttcatcattataatgctacaccacctagctctactacacattttgggataccacataatagcatgatatcgagttcagctcttagtatgcctaatgctcctccaaattgtcaagtcctactcccattcactaccaatgttggtgttccgcagtcagtgcctaattctggatatatgctgcataataatgttggaaatgaaaattgcttttcatcatctgctccctcttatggttatgcacctcaaagtggttctagcacttcatatgttcaacagttcaatcttaatcacagtggagctcaacaacatggaaacttctctcaacaaaatgtgcaacctggtacattcaacaatagttctcagcaaaataatggcttttctcgtaaggagaaattttcttcacaggccatgccttgctctgcatcattgcctgctctcagaaatgcagcctctgtgtcttctgcaaacaaaatttccacacctgcccaggctcaagatggcaataactcttatgtcactactgaacttcaaggaaatgagaatttgaaaactgatgtcgaaaagatagttcaagataattttgtttgtgaaactgatatggatgttggggctgttgctgaaaatttcagtaagagttgtccagaagttgttaagggtgttgatggggatgacagcaagaaggaggacataagaacggacaaaatatatgtgtatagcaggtctatgaacaaagtagataccaaggaagctgagggtagtttgcagcatgctctcaagaaaatggaagctttgccaacaccaggaacttggctccttccttccattccggacagaaatctattgaattgtagacaagcttgtgagtctacgaatttatggcgattacttcctctcattcctcctggttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Retrotran_gag_2 gag_pre-integrs

Protein Analysis

613

Amino Acids

67.35

Weight (kDa)

6.4

Isoelectric Point (pI)

39.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018620)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0023291
rosa_multiflora	Rmu_sc0000079.1_g000011 Rmu_sc0001353.1_g000046 Rmu_sc0001981.1_g000013 Rmu_sc0003249.1_g000018 Rmu_sc0008647.1_g000021 Rmu_sc0009409.1_g000013 Rmu_sc0010739.1_g000008
rosa_samantha	Rh5CG179100 Rh5DG165700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	900, 945
AarI	CACCTGC	1 cut(s)	1423
Acc36I	ACCTGC	2 cut(s)	1423, 1641
AccI	GTMKAC	3 cut(s)	889, 1783, 1799
AccIII	TCCGGA	1 cut(s)	1759
AciI	CCGC	2 cut(s)	539, 1082
AclI	AACGTT	1 cut(s)	439
AclWI	GGATC	2 cut(s)	154, 505
AcsI	RAATTY	6 cut(s)	399, 1325, 1404, 1474, 1555, 1804
AfaI	GTAC	3 cut(s)	268, 763, 1276
AfiI	CCNNNNNNNGG	5 cut(s)	764, 1100, 1163, 1181, 1733
AjnI	CCWGG	6 cut(s)	381, 883, 1270, 1419, 1732, 1834
Alw21I	GWGCWC	3 cut(s)	286, 381, 1234
Alw26I	GTCTC	2 cut(s)	32, 179
AlwI	GGATC	2 cut(s)	154, 505
AlwNI	CAGNNNCTG	1 cut(s)	1385
Aor13HI	TCCGGA	1 cut(s)	1759
AoxI	GGCC	3 cut(s)	384, 767, 1338
ApeKI	GCWGC	5 cut(s)	650, 839, 1111, 1379, 1696
ApoI	RAATTY	6 cut(s)	399, 1325, 1404, 1474, 1555, 1804
AspS9I	GGNCC	2 cut(s)	457, 767
AsuHPI	GGTGA	1 cut(s)	46
AsuII	TTCGAA	1 cut(s)	565
AvaII	GGWCC	1 cut(s)	457
AxyI	CCTNAGG	1 cut(s)	201
BanII	GRGCYC	2 cut(s)	381, 1234
BauI	CACGAG	1 cut(s)	921
BbsI	GAAGAC	2 cut(s)	681, 1383
Bbv12I	GWGCWC	3 cut(s)	286, 381, 1234
BbvCI	CCTCAGC	1 cut(s)	1683
BbvI	GCAGC	5 cut(s)	637, 826, 1098, 1391, 1708
BccI	CCATC	6 cut(s)	137, 691, 778, 799, 1424, 1589
BcgI	CGANNNNNNTGC	4 cut(s)	383, 417, 666, 700
BciT130I	CCWGG	6 cut(s)	383, 885, 1272, 1421, 1734, 1836
BciVI	GTATCC	2 cut(s)	747, 975
BcoDI	GTCTC	2 cut(s)	32, 179
BfaI	CTAG	4 cut(s)	101, 264, 960, 1188
BfuAI	ACCTGC	2 cut(s)	1423, 1641
BfuI	GTATCC	2 cut(s)	747, 975
BisI	GCNGC	6 cut(s)	540, 651, 840, 1112, 1380, 1697
BlsI	GCNGC	6 cut(s)	541, 652, 841, 1113, 1381, 1698
BmcAI	AGTACT	1 cut(s)	268
Bme1390I	CCNGG	6 cut(s)	383, 885, 1272, 1421, 1734, 1836
Bme18I	GGWCC	1 cut(s)	457
BmgT120I	GGNCC	2 cut(s)	457, 767
BmiI	GGNNCC	1 cut(s)	1745
BmrFI	CCNGG	6 cut(s)	383, 885, 1272, 1421, 1734, 1836
BmsI	GCATC	2 cut(s)	851, 1364
BpiI	GAAGAC	2 cut(s)	681, 1383
BplI	GAGNNNNNCTC	2 cut(s)	997, 1029
BpmI	CTGGAG	2 cut(s)	365, 495
Bpu10I	CCTNAGC	1 cut(s)	1683
Bpu14I	TTCGAA	1 cut(s)	565
BpuEI	CTTGAG	3 cut(s)	762, 1410, 1691
BsaBI	GATNNNNATC	1 cut(s)	873
BsaJI	CCNNGG	2 cut(s)	1419, 1674
BsaWI	WCCGGW	1 cut(s)	1759
Bsc4I	CCNNNNNNNGG	5 cut(s)	764, 1100, 1163, 1181, 1733
Bse1I	ACTGG	3 cut(s)	9, 193, 808
Bse21I	CCTNAGG	1 cut(s)	201
Bse3DI	GCAATG	1 cut(s)	1358
Bse8I	GATNNNNATC	1 cut(s)	873
BseAI	TCCGGA	1 cut(s)	1759
BseBI	CCWGG	6 cut(s)	383, 885, 1272, 1421, 1734, 1836
BseDI	CCNNGG	2 cut(s)	1419, 1674
BseGI	GGATG	4 cut(s)	616, 791, 1540, 1606
BseJI	GATNNNNATC	1 cut(s)	873
BseLI	CCNNNNNNNGG	5 cut(s)	764, 1100, 1163, 1181, 1733
BseMI	GCAATG	1 cut(s)	1358
BseMII	CTCAG	3 cut(s)	1307, 1384, 1674
BseNI	ACTGG	3 cut(s)	9, 193, 808
BseRI	GAGGAG	2 cut(s)	20, 1023
BseXI	GCAGC	5 cut(s)	637, 826, 1098, 1391, 1708
BshFI	GGCC	3 cut(s)	386, 769, 1340
BsiHKAI	GWGCWC	3 cut(s)	286, 381, 1234
BsiSI	CCGG	1 cut(s)	1760
BslI	CCNNNNNNNGG	5 cut(s)	764, 1100, 1163, 1181, 1733
BsmAI	GTCTC	2 cut(s)	32, 179
BsnI	GGCC	3 cut(s)	386, 769, 1340
Bsp119I	TTCGAA	1 cut(s)	565
Bsp1286I	GDGCHC	3 cut(s)	286, 381, 1234
Bsp13I	TCCGGA	1 cut(s)	1759
Bsp143I	GATC	4 cut(s)	124, 146, 510, 641
BspACI	CCGC	2 cut(s)	539, 1082
BspANI	GGCC	3 cut(s)	386, 769, 1340
BspCNI	CTCAG	3 cut(s)	1306, 1383, 1675
BspEI	TCCGGA	1 cut(s)	1759
BspLI	GGNNCC	1 cut(s)	1745
BspMI	ACCTGC	2 cut(s)	1423, 1641
BspPI	GGATC	2 cut(s)	154, 505
BspT104I	TTCGAA	1 cut(s)	565
BsrDI	GCAATG	1 cut(s)	1358
BsrI	ACTGG	3 cut(s)	9, 193, 808
BssECI	CCNNGG	2 cut(s)	1419, 1674
BssMI	GATC	4 cut(s)	124, 146, 510, 641
BssNAI	GTATAC	1 cut(s)	890
BssSI	CACGAG	1 cut(s)	921
BssT1I	CCWWGG	1 cut(s)	1674
Bst1107I	GTATAC	1 cut(s)	890
Bst2BI	CACGAG	1 cut(s)	921
Bst2UI	CCWGG	6 cut(s)	383, 885, 1272, 1421, 1734, 1836
Bst4CI	ACNGT	4 cut(s)	451, 553, 1209, 1226
Bst6I	CTCTTC	1 cut(s)	207
BstAPI	GCANNNNNTGC	1 cut(s)	1090
BstBI	TTCGAA	1 cut(s)	565
BstC8I	GCNNGC	3 cut(s)	590, 1365, 1701
BstDEI	CTNAG	6 cut(s)	201, 584, 1016, 1293, 1370, 1683
BstF5I	GGATG	4 cut(s)	616, 791, 1540, 1606
BstKTI	GATC	4 cut(s)	127, 149, 513, 644
BstMAI	GTCTC	2 cut(s)	32, 179
BstMBI	GATC	4 cut(s)	124, 146, 510, 641
BstMWI	GCNNNNNNNGC	3 cut(s)	594, 707, 1090
BstNI	CCWGG	6 cut(s)	383, 885, 1272, 1421, 1734, 1836
BstNSI	RCATGY	2 cut(s)	530, 1703
BstSCI	CCNGG	6 cut(s)	381, 883, 1270, 1419, 1732, 1834
BstV1I	GCAGC	5 cut(s)	637, 826, 1098, 1391, 1708
BstV2I	GAAGAC	2 cut(s)	681, 1383
BstX2I	RGATCY	1 cut(s)	146
BstXI	CCANNNNNNTGG	3 cut(s)	16, 803, 1740
BstYI	RGATCY	1 cut(s)	146
BstZ17I	GTATAC	1 cut(s)	890
Bsu36I	CCTNAGG	1 cut(s)	201
BsuI	GTATCC	2 cut(s)	747, 975
BsuRI	GGCC	3 cut(s)	386, 769, 1340
BtsCI	GGATG	4 cut(s)	616, 791, 1540, 1606
BtsI	GCAGTG	1 cut(s)	677
BtsIMutI	CAGTG	3 cut(s)	677, 1095, 1231
BveI	ACCTGC	2 cut(s)	1423, 1641
Cac8I	GCNNGC	3 cut(s)	590, 1365, 1701
CaiI	CAGNNNCTG	1 cut(s)	1385
Cfr13I	GGNCC	2 cut(s)	457, 767
CsiI	ACCWGGT	1 cut(s)	1270
Csp6I	GTAC	3 cut(s)	267, 762, 1275
CviAII	CATG	8 cut(s)	58, 236, 527, 661, 997, 1241, 1342, 1700
CviQI	GTAC	3 cut(s)	267, 762, 1275
DdeI	CTNAG	6 cut(s)	201, 584, 1016, 1293, 1370, 1683
DpnI	GATC	4 cut(s)	126, 148, 512, 643
DpnII	GATC	4 cut(s)	124, 146, 510, 641
DraI	TTTAAA	1 cut(s)	445
Eam1104I	CTCTTC	1 cut(s)	207
EarI	CTCTTC	1 cut(s)	207
Ecl136II	GAGCTC	2 cut(s)	379, 1232
Eco130I	CCWWGG	1 cut(s)	1674
Eco147I	AGGCCT	1 cut(s)	386
Eco24I	GRGCYC	2 cut(s)	381, 1234
Eco32I	GATATC	1 cut(s)	1002
Eco47I	GGWCC	1 cut(s)	457
Eco53kI	GAGCTC	2 cut(s)	379, 1232
Eco81I	CCTNAGG	1 cut(s)	201
EcoICRI	GAGCTC	2 cut(s)	379, 1232
EcoRII	CCWGG	6 cut(s)	381, 883, 1270, 1419, 1732, 1834
EcoRV	GATATC	1 cut(s)	1002
EcoT14I	CCWWGG	1 cut(s)	1674
EcoT38I	GRGCYC	2 cut(s)	381, 1234
ErhI	CCWWGG	1 cut(s)	1674
FaeI	CATG	8 cut(s)	61, 239, 530, 664, 1000, 1244, 1345, 1703
FatI	CATG	8 cut(s)	57, 235, 526, 660, 996, 1240, 1341, 1699
FauNDI	CATATG	1 cut(s)	1198
FblI	GTMKAC	3 cut(s)	889, 1783, 1799
Fnu4HI	GCNGC	6 cut(s)	540, 651, 840, 1112, 1380, 1697
FokI	GGATG	4 cut(s)	623, 778, 1547, 1613
FriOI	GRGCYC	2 cut(s)	381, 1234
Fsp4HI	GCNGC	6 cut(s)	540, 651, 840, 1112, 1380, 1697
FspBI	CTAG	4 cut(s)	101, 264, 960, 1188
GluI	GCNGC	6 cut(s)	540, 651, 840, 1112, 1380, 1697
GsuI	CTGGAG	2 cut(s)	365, 495
HaeIII	GGCC	3 cut(s)	386, 769, 1340
HapII	CCGG	1 cut(s)	1760
Hin1II	CATG	8 cut(s)	61, 239, 530, 664, 1000, 1244, 1345, 1703
HincII	GTYRAC	1 cut(s)	532
HindII	GTYRAC	1 cut(s)	532
HindIII	AAGCTT	3 cut(s)	369, 1719, 1788
HinfI	GANTC	6 cut(s)	104, 253, 617, 635, 880, 1796
HpaII	CCGG	1 cut(s)	1760
HphI	GGTGA	1 cut(s)	46
Hpy166II	GTNNAC	4 cut(s)	532, 890, 1784, 1800
Hpy188I	TCNGA	6 cut(s)	405, 510, 560, 622, 879, 1373
Hpy8I	GTNNAC	4 cut(s)	532, 890, 1784, 1800
HpyAV	CCTTC	4 cut(s)	903, 1606, 1757, 1761
HpyCH4III	ACNGT	4 cut(s)	451, 553, 1209, 1226
HpyCH4IV	ACGT	1 cut(s)	439
HpyF10VI	GCNNNNNNNGC	3 cut(s)	594, 707, 1090
HpyF3I	CTNAG	6 cut(s)	201, 584, 1016, 1293, 1370, 1683
HpySE526I	ACGT	1 cut(s)	439
Hsp92II	CATG	8 cut(s)	61, 239, 530, 664, 1000, 1244, 1345, 1703
Kpn2I	TCCGGA	1 cut(s)	1759
Kzo9I	GATC	4 cut(s)	124, 146, 510, 641
LmnI	GCTCC	7 cut(s)	303, 384, 669, 1036, 1159, 1229, 1749
Lsp1109I	GCAGC	5 cut(s)	637, 826, 1098, 1391, 1708
LweI	GCATC	2 cut(s)	851, 1364
MabI	ACCWGGT	1 cut(s)	1270
MaeI	CTAG	4 cut(s)	101, 264, 960, 1188
MaeII	ACGT	1 cut(s)	439
MaeIII	GTNAC	3 cut(s)	82, 205, 1447
MalI	GATC	4 cut(s)	126, 148, 512, 643
MboI	GATC	4 cut(s)	124, 146, 510, 641
MboII	GAAGA	6 cut(s)	224, 506, 681, 804, 1323, 1383
MflI	RGATCY	1 cut(s)	146
MhlI	GDGCHC	3 cut(s)	286, 381, 1234
MlyI	GAGTC	4 cut(s)	113, 247, 626, 1805
MmeI	TCCRAC	3 cut(s)	60, 691, 1105
MroI	TCCGGA	1 cut(s)	1759
MseI	TTAA	4 cut(s)	444, 546, 1218, 1584
MslI	CAYNNNNRTG	3 cut(s)	56, 945, 1119
MspI	CCGG	1 cut(s)	1760
MspR9I	CCNGG	6 cut(s)	383, 885, 1272, 1421, 1734, 1836
MvaI	CCWGG	6 cut(s)	383, 885, 1272, 1421, 1734, 1836
MwoI	GCNNNNNNNGC	3 cut(s)	594, 707, 1090
NdeI	CATATG	1 cut(s)	1198
NdeII	GATC	4 cut(s)	124, 146, 510, 641
NlaIII	CATG	8 cut(s)	61, 239, 530, 664, 1000, 1244, 1345, 1703
NlaIV	GGNNCC	1 cut(s)	1745
NmuCI	GTSAC	2 cut(s)	82, 1447
NspI	RCATGY	2 cut(s)	530, 1703
NspV	TTCGAA	1 cut(s)	565
PaeI	GCATGC	1 cut(s)	1703
PaqCI	CACCTGC	1 cut(s)	1423
PceI	AGGCCT	1 cut(s)	386
PfeI	GAWTC	2 cut(s)	635, 880
PkrI	GCNGC	6 cut(s)	541, 652, 841, 1113, 1381, 1698
PleI	GAGTC	4 cut(s)	112, 247, 625, 1804
PpsI	GAGTC	4 cut(s)	112, 247, 625, 1804
PsiI	TTATAA	2 cut(s)	900, 945
Psp124BI	GAGCTC	2 cut(s)	381, 1234
Psp1406I	AACGTT	1 cut(s)	439
Psp6I	CCWGG	6 cut(s)	381, 883, 1270, 1419, 1732, 1834
PspGI	CCWGG	6 cut(s)	381, 883, 1270, 1419, 1732, 1834
PspN4I	GGNNCC	1 cut(s)	1745
PspPI	GGNCC	2 cut(s)	457, 767
PstNI	CAGNNNCTG	1 cut(s)	1385
PsuI	RGATCY	1 cut(s)	146
RsaI	GTAC	3 cut(s)	268, 763, 1276
RsaNI	GTAC	3 cut(s)	267, 762, 1275
RseI	CAYNNNNRTG	3 cut(s)	56, 945, 1119
SacI	GAGCTC	2 cut(s)	381, 1234
SaqAI	TTAA	4 cut(s)	444, 546, 1218, 1584
SatI	GCNGC	6 cut(s)	540, 651, 840, 1112, 1380, 1697
Sau3AI	GATC	4 cut(s)	124, 146, 510, 641
Sau96I	GGNCC	2 cut(s)	457, 767
ScaI	AGTACT	1 cut(s)	268
SchI	GAGTC	4 cut(s)	113, 247, 626, 1805
ScrFI	CCNGG	6 cut(s)	383, 885, 1272, 1421, 1734, 1836
SduI	GDGCHC	3 cut(s)	286, 381, 1234
SexAI	ACCWGGT	1 cut(s)	1270
SfaNI	GCATC	2 cut(s)	851, 1364
SfuI	TTCGAA	1 cut(s)	565
SinI	GGWCC	1 cut(s)	457
SmiMI	CAYNNNNRTG	3 cut(s)	56, 945, 1119
SmlI	CTYRAG	3 cut(s)	777, 1425, 1706
SmoI	CTYRAG	3 cut(s)	777, 1425, 1706
SphI	GCATGC	1 cut(s)	1703
SseBI	AGGCCT	1 cut(s)	386
SsiI	CCGC	2 cut(s)	539, 1082
SspI	AATATT	1 cut(s)	718
SspMI	CTAG	4 cut(s)	101, 264, 960, 1188
SstI	GAGCTC	2 cut(s)	381, 1234
StuI	AGGCCT	1 cut(s)	386
StyD4I	CCNGG	6 cut(s)	381, 883, 1270, 1419, 1732, 1834
StyI	CCWWGG	1 cut(s)	1674
TaaI	ACNGT	4 cut(s)	451, 553, 1209, 1226
TaiI	ACGT	1 cut(s)	442
TaqI	TCGA	5 cut(s)	13, 375, 565, 1004, 1491
TatI	WGTACW	2 cut(s)	266, 761
TauI	GCSGC	1 cut(s)	542
TfiI	GAWTC	2 cut(s)	635, 880
Tru1I	TTAA	4 cut(s)	444, 546, 1218, 1584
Tru9I	TTAA	4 cut(s)	444, 546, 1218, 1584
TscAI	CASTG	3 cut(s)	684, 1095, 1231
TseFI	GTSAC	2 cut(s)	82, 1447
TseI	GCWGC	5 cut(s)	650, 839, 1111, 1379, 1696
Tsp45I	GTSAC	2 cut(s)	82, 1447
TspDTI	ATGAA	9 cut(s)	17, 472, 507, 720, 926, 1134, 1146, 1185, 1673
TspGWI	ACGGA	1 cut(s)	1643
TspRI	CASTG	3 cut(s)	684, 1095, 1231
VpaK11BI	GGWCC	1 cut(s)	457
XapI	RAATTY	6 cut(s)	399, 1325, 1404, 1474, 1555, 1804
XceI	RCATGY	2 cut(s)	530, 1703
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1427
XmiI	GTMKAC	3 cut(s)	889, 1783, 1799
XspI	CTAG	4 cut(s)	101, 264, 960, 1188
ZrmI	AGTACT	1 cut(s)	268

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.