Rmu_sc0009409.1_g000013

DUF1087

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009409.1
OG0018620
Physical Location & Seq
Forward (+)
78674 .. 80167
1494 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009409.1_g000013.1.cds

Sequence Viewer

Length: 1494 bp
atggaacgttttaaaactgttcgggatcgactctctgcttttggagtcttcattcctgatgaagatatagtgtttctgatcctaaatggattgcctattgactttgcggccattaagactgtcatcagaattcgaacaacgccaatatctctaagcgagcttcgcacaatgttattggatgttgagtctgatatagttcaagaatcaagatcatttgctgctacttccatgctccaacacaaagcactgccatcgtcttctcttacagcaatgattgcacaaaatattcttgccaattcatctcaaagtatgcaatatgggataccaagtacagggccaacatctcaagcaatctttccatcccattatactggatattcttcaatgacacattctctacaaactgctgcatcaaatgttagtttcttgcctaatgttaccaatactaatctgattccagatataccttcttataaccattacaatacatcatctcgtgcctccaatgttcatcattataatgctacaccacctagctctactacacattttgagataccacataatagcatgatatcgagttcagctcttagtatgcctaatgctcctccaaattgtcaagtcctgctcccattcactaccaatgttggtgttccgcagtcagtgcctaattctggatatatgctgcataataatgttggaaatgaaattttcttttcatcatctgctccctcttatggttatgcacctcaaaatggttctagcactttaaatgttcaacagttcaatcttagtcacagtggagctcaacaacatggaaacttctctcaacaaaatgtgcaacctggtacattcaacaatagttctcagcaaaataatggcttttctcgtaaggagaaattttcttcacaggccatgccttgctctgcatcattgtctgctctcagaaatgcagcctctgtgtcttctgtaaacaaaatttccacaccttcccaggctcaagatggcaataactcttatttcactactgaacttcaaggacatgagaatttgaaaattgatgtcgaaaagatagttcaagataattttgtttgtaaaactgatatggatgttggggctgttgctgaaaatttcagtaagagttgtcaagaagctgttaagggtgttgatggggatgacagcaagaaggaggacataagaacggacaaaatatatgtgtatagcaggtctatgaacaaagtagataccaaggaagctgctgagggtagtttgcagcatgctctcaagaaaatggaagctttgccaacaccaggaacttggctccttccttccattccggacaaaaatctattgaattatagacaagcttgtgagtctacgaatttatggcgattacttcctctccttcctcctggttgtcacaagttgctgcacgcttctatatcctggctttactcatgtcagcttgaagattgtatccaatcatcaagctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000118 GO:0000228 GO:0000785 GO:0000790 GO:0000792 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005829 GO:0005911 GO:0006323 GO:0006325 GO:0006338 GO:0006355 GO:0006357 GO:0006464 GO:0006473 GO:0006475 GO:0006479 GO:0006807 GO:0006996 GO:0006997 GO:0007275 GO:0007276 GO:0007281 GO:0007283 GO:0007286 GO:0007289 GO:0007399 GO:0007417 GO:0007420 GO:0008150 GO:0008152 GO:0008213 GO:0008285 GO:0009506 GO:0009889 GO:0009966 GO:0009967 GO:0009987 GO:0010468 GO:0010556 GO:0010646 GO:0010647 GO:0016043 GO:0016569 GO:0016570 GO:0016571 GO:0016573 GO:0016581 GO:0016604 GO:0016607 GO:0017053 GO:0018022 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019219 GO:0019222 GO:0019538 GO:0019953 GO:0021895 GO:0021953 GO:0022008 GO:0022412 GO:0022414 GO:0023051 GO:0023056 GO:0030054 GO:0030154 GO:0030182 GO:0030900 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032259 GO:0032501 GO:0032502 GO:0032504 GO:0032991 GO:0034728 GO:0034968 GO:0035064 GO:0035092 GO:0035093 GO:0036211 GO:0042127 GO:0042393 GO:0043044 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0043486 GO:0043543 GO:0043933 GO:0043967 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044703 GO:0045165 GO:0048232 GO:0048468 GO:0048513 GO:0048515 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0048609 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0051704 GO:0055044 GO:0060255 GO:0060322 GO:0060850 GO:0061628 GO:0065007 GO:0070013 GO:0070603 GO:0070734 GO:0071103 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090545 GO:0090568 GO:0098532 GO:0140030 GO:0140034 GO:1901564 GO:1901796 GO:1901798 GO:1902494 GO:1902531 GO:1902533 GO:1903506 GO:1904949 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko05165 ko05203 map05165 map05203
Pfam Domains
Protein Families
Chromo DUF1087 Helicase_C PHD SNF2_N

Protein Analysis

497

Amino Acids

54.32

Weight (kDa)

6.31

Isoelectric Point (pI)

47.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 474, 519
Acc36I ACCTGC 1 cut(s) 1215
AccI GTMKAC 1 cut(s) 1376
AccIII TCCGGA 1 cut(s) 1336
AciI CCGC 2 cut(s) 107, 656
AclI AACGTT 1 cut(s) 7
AclWI GGATC 2 cut(s) 33, 73
AcoI YGGCCR 1 cut(s) 108
AcsI RAATTY 7 cut(s) 129, 708, 899, 978, 1048, 1129, 1381
AfaI GTAC 2 cut(s) 331, 850
AfiI CCNNNNNNNGG 5 cut(s) 332, 674, 737, 755, 1310
AjnI CCWGG 5 cut(s) 844, 993, 1309, 1411, 1445
Alw21I GWGCWC 1 cut(s) 808
AlwI GGATC 2 cut(s) 33, 73
AlwNI CAGNNNCTG 1 cut(s) 959
Aor13HI TCCGGA 1 cut(s) 1336
AoxI GGCC 3 cut(s) 108, 335, 912
ApeKI GCWGC 7 cut(s) 218, 407, 685, 953, 1256, 1273, 1429
ApoI RAATTY 7 cut(s) 129, 708, 899, 978, 1048, 1129, 1381
AspS9I GGNCC 1 cut(s) 335
AsuII TTCGAA 1 cut(s) 133
BanII GRGCYC 1 cut(s) 808
BauI CACGAG 1 cut(s) 495
BbsI GAAGAC 3 cut(s) 40, 249, 957
Bbv12I GWGCWC 1 cut(s) 808
BbvCI CCTCAGC 1 cut(s) 1260
BbvI GCAGC 7 cut(s) 205, 394, 672, 965, 1243, 1285, 1416
BccI CCATC 4 cut(s) 259, 367, 998, 1163
BcgI CGANNNNNNTGC 2 cut(s) 234, 268
BciT130I CCWGG 5 cut(s) 846, 995, 1311, 1413, 1447
BciVI GTATCC 2 cut(s) 315, 1487
BfaI CTAG 2 cut(s) 534, 762
BfuAI ACCTGC 1 cut(s) 1215
BfuI GTATCC 2 cut(s) 315, 1487
BisI GCNGC 8 cut(s) 108, 219, 408, 686, 954, 1257, 1274, 1430
BlsI GCNGC 8 cut(s) 109, 220, 409, 687, 955, 1258, 1275, 1431
Bme1390I CCNGG 5 cut(s) 846, 995, 1311, 1413, 1447
BmgT120I GGNCC 1 cut(s) 335
BmiI GGNNCC 1 cut(s) 1322
BmrFI CCNGG 5 cut(s) 846, 995, 1311, 1413, 1447
BmsI GCATC 2 cut(s) 419, 938
BpiI GAAGAC 3 cut(s) 40, 249, 957
BplI GAGNNNNNCTC 2 cut(s) 571, 603
Bpu10I CCTNAGC 1 cut(s) 1260
Bpu14I TTCGAA 1 cut(s) 133
BpuEI CTTGAG 3 cut(s) 330, 984, 1268
BsaJI CCNNGG 2 cut(s) 993, 1248
BsaWI WCCGGW 1 cut(s) 1336
BsaXI ACNNNNNCTCC 2 cut(s) 1386, 1416
Bsc4I CCNNNNNNNGG 5 cut(s) 332, 674, 737, 755, 1310
Bse1I ACTGG 1 cut(s) 376
Bse3DI GCAATG 1 cut(s) 276
BseAI TCCGGA 1 cut(s) 1336
BseBI CCWGG 5 cut(s) 846, 995, 1311, 1413, 1447
BseDI CCNNGG 2 cut(s) 993, 1248
BseGI GGATG 4 cut(s) 184, 359, 1114, 1180
BseLI CCNNNNNNNGG 5 cut(s) 332, 674, 737, 755, 1310
BseMI GCAATG 1 cut(s) 276
BseMII CTCAG 3 cut(s) 881, 958, 1251
BseNI ACTGG 1 cut(s) 376
BseRI GAGGAG 1 cut(s) 597
BseXI GCAGC 7 cut(s) 205, 394, 672, 965, 1243, 1285, 1416
BsgI GTGCAG 1 cut(s) 1415
BshFI GGCC 3 cut(s) 110, 337, 914
BsiHKAI GWGCWC 1 cut(s) 808
BsiSI CCGG 1 cut(s) 1337
BslI CCNNNNNNNGG 5 cut(s) 332, 674, 737, 755, 1310
BsnI GGCC 3 cut(s) 110, 337, 914
Bsp119I TTCGAA 1 cut(s) 133
Bsp1286I GDGCHC 1 cut(s) 808
Bsp13I TCCGGA 1 cut(s) 1336
Bsp143I GATC 3 cut(s) 25, 78, 209
BspACI CCGC 2 cut(s) 107, 656
BspANI GGCC 3 cut(s) 110, 337, 914
BspCNI CTCAG 3 cut(s) 880, 957, 1252
BspEI TCCGGA 1 cut(s) 1336
BspLI GGNNCC 1 cut(s) 1322
BspMI ACCTGC 1 cut(s) 1215
BspPI GGATC 2 cut(s) 33, 73
BspT104I TTCGAA 1 cut(s) 133
BsrDI GCAATG 1 cut(s) 276
BsrI ACTGG 1 cut(s) 376
BssECI CCNNGG 2 cut(s) 993, 1248
BssMI GATC 3 cut(s) 25, 78, 209
BssSI CACGAG 1 cut(s) 495
BssT1I CCWWGG 1 cut(s) 1248
Bst2BI CACGAG 1 cut(s) 495
Bst2UI CCWGG 5 cut(s) 846, 995, 1311, 1413, 1447
Bst4CI ACNGT 4 cut(s) 19, 121, 783, 800
BstAPI GCANNNNNTGC 2 cut(s) 275, 664
BstBI TTCGAA 1 cut(s) 133
BstC8I GCNNGC 3 cut(s) 158, 1278, 1434
BstDEI CTNAG 6 cut(s) 152, 590, 791, 867, 944, 1260
BstF5I GGATG 4 cut(s) 184, 359, 1114, 1180
BstKTI GATC 3 cut(s) 28, 81, 212
BstMBI GATC 3 cut(s) 25, 78, 209
BstMWI GCNNNNNNNGC 3 cut(s) 162, 275, 664
BstNI CCWGG 5 cut(s) 846, 995, 1311, 1413, 1447
BstNSI RCATGY 1 cut(s) 1280
BstSCI CCNGG 5 cut(s) 844, 993, 1309, 1411, 1445
BstV1I GCAGC 7 cut(s) 205, 394, 672, 965, 1243, 1285, 1416
BstV2I GAAGAC 3 cut(s) 40, 249, 957
BstXI CCANNNNNNTGG 2 cut(s) 371, 1317
BsuI GTATCC 2 cut(s) 315, 1487
BsuRI GGCC 3 cut(s) 110, 337, 914
BtsCI GGATG 4 cut(s) 184, 359, 1114, 1180
BtsI GCAGTG 1 cut(s) 245
BtsIMutI CAGTG 3 cut(s) 245, 669, 805
BveI ACCTGC 1 cut(s) 1215
Cac8I GCNNGC 3 cut(s) 158, 1278, 1434
CaiI CAGNNNCTG 1 cut(s) 959
Cfr13I GGNCC 1 cut(s) 335
CsiI ACCWGGT 1 cut(s) 844
Csp6I GTAC 2 cut(s) 330, 849
CviAII CATG 7 cut(s) 229, 571, 815, 916, 1043, 1277, 1458
CviQI GTAC 2 cut(s) 330, 849
DdeI CTNAG 6 cut(s) 152, 590, 791, 867, 944, 1260
DpnI GATC 3 cut(s) 27, 80, 211
DpnII GATC 3 cut(s) 25, 78, 209
DraI TTTAAA 2 cut(s) 13, 771
EaeI YGGCCR 1 cut(s) 108
Ecl136II GAGCTC 1 cut(s) 806
Eco130I CCWWGG 1 cut(s) 1248
Eco24I GRGCYC 1 cut(s) 808
Eco32I GATATC 1 cut(s) 576
Eco53kI GAGCTC 1 cut(s) 806
EcoICRI GAGCTC 1 cut(s) 806
EcoRI GAATTC 1 cut(s) 129
EcoRII CCWGG 5 cut(s) 844, 993, 1309, 1411, 1445
EcoRV GATATC 1 cut(s) 576
EcoT14I CCWWGG 1 cut(s) 1248
EcoT38I GRGCYC 1 cut(s) 808
ErhI CCWWGG 1 cut(s) 1248
FaeI CATG 7 cut(s) 232, 574, 818, 919, 1046, 1280, 1461
FatI CATG 7 cut(s) 228, 570, 814, 915, 1042, 1276, 1457
FblI GTMKAC 1 cut(s) 1376
Fnu4HI GCNGC 8 cut(s) 108, 219, 408, 686, 954, 1257, 1274, 1430
FokI GGATG 4 cut(s) 191, 346, 1121, 1187
FriOI GRGCYC 1 cut(s) 808
Fsp4HI GCNGC 8 cut(s) 108, 219, 408, 686, 954, 1257, 1274, 1430
FspBI CTAG 2 cut(s) 534, 762
GluI GCNGC 8 cut(s) 108, 219, 408, 686, 954, 1257, 1274, 1430
HaeIII GGCC 3 cut(s) 110, 337, 914
HapII CCGG 1 cut(s) 1337
Hin1II CATG 7 cut(s) 232, 574, 818, 919, 1046, 1280, 1461
HindIII AAGCTT 2 cut(s) 1296, 1365
HinfI GANTC 6 cut(s) 30, 45, 185, 203, 454, 1373
HpaII CCGG 1 cut(s) 1337
Hpy166II GTNNAC 2 cut(s) 973, 1377
Hpy188I TCNGA 5 cut(s) 78, 128, 190, 453, 947
Hpy8I GTNNAC 2 cut(s) 973, 1377
HpyAV CCTTC 6 cut(s) 477, 999, 1180, 1334, 1338, 1415
HpyCH4III ACNGT 4 cut(s) 19, 121, 783, 800
HpyCH4IV ACGT 1 cut(s) 7
HpyF10VI GCNNNNNNNGC 3 cut(s) 162, 275, 664
HpyF3I CTNAG 6 cut(s) 152, 590, 791, 867, 944, 1260
HpySE526I ACGT 1 cut(s) 7
Hsp92II CATG 7 cut(s) 232, 574, 818, 919, 1046, 1280, 1461
Kpn2I TCCGGA 1 cut(s) 1336
Kzo9I GATC 3 cut(s) 25, 78, 209
LmnI GCTCC 6 cut(s) 237, 610, 633, 733, 803, 1326
Lsp1109I GCAGC 7 cut(s) 205, 394, 672, 965, 1243, 1285, 1416
LweI GCATC 2 cut(s) 419, 938
MabI ACCWGGT 1 cut(s) 844
MaeI CTAG 2 cut(s) 534, 762
MaeII ACGT 1 cut(s) 7
MaeIII GTNAC 3 cut(s) 436, 794, 1418
MalI GATC 3 cut(s) 27, 80, 211
MboI GATC 3 cut(s) 25, 78, 209
MboII GAAGA 7 cut(s) 40, 74, 249, 372, 897, 957, 1481
MhlI GDGCHC 1 cut(s) 808
MlyI GAGTC 4 cut(s) 24, 54, 194, 1382
MmeI TCCRAC 2 cut(s) 259, 679
MnlI CCTC 9 cut(s) 511, 618, 742, 759, 967, 1183, 1255, 1410, 1419
MroI TCCGGA 1 cut(s) 1336
MseI TTAA 4 cut(s) 12, 114, 770, 1158
MslI CAYNNNNRTG 2 cut(s) 519, 693
MspI CCGG 1 cut(s) 1337
MspR9I CCNGG 5 cut(s) 846, 995, 1311, 1413, 1447
MvaI CCWGG 5 cut(s) 846, 995, 1311, 1413, 1447
MwoI GCNNNNNNNGC 3 cut(s) 162, 275, 664
NdeII GATC 3 cut(s) 25, 78, 209
NlaIII CATG 7 cut(s) 232, 574, 818, 919, 1046, 1280, 1461
NlaIV GGNNCC 1 cut(s) 1322
NmuCI GTSAC 2 cut(s) 794, 1418
NspI RCATGY 1 cut(s) 1280
NspV TTCGAA 1 cut(s) 133
PaeI GCATGC 1 cut(s) 1280
PfeI GAWTC 2 cut(s) 203, 454
PkrI GCNGC 8 cut(s) 109, 220, 409, 687, 955, 1258, 1275, 1431
PleI GAGTC 4 cut(s) 24, 53, 193, 1381
PpsI GAGTC 4 cut(s) 24, 53, 193, 1381
PsiI TTATAA 2 cut(s) 474, 519
Psp124BI GAGCTC 1 cut(s) 808
Psp1406I AACGTT 1 cut(s) 7
Psp6I CCWGG 5 cut(s) 844, 993, 1309, 1411, 1445
PspGI CCWGG 5 cut(s) 844, 993, 1309, 1411, 1445
PspN4I GGNNCC 1 cut(s) 1322
PspPI GGNCC 1 cut(s) 335
PstNI CAGNNNCTG 1 cut(s) 959
RsaI GTAC 2 cut(s) 331, 850
RsaNI GTAC 2 cut(s) 330, 849
RseI CAYNNNNRTG 2 cut(s) 519, 693
SacI GAGCTC 1 cut(s) 808
SaqAI TTAA 4 cut(s) 12, 114, 770, 1158
SatI GCNGC 8 cut(s) 108, 219, 408, 686, 954, 1257, 1274, 1430
Sau3AI GATC 3 cut(s) 25, 78, 209
Sau96I GGNCC 1 cut(s) 335
SchI GAGTC 4 cut(s) 24, 54, 194, 1382
ScrFI CCNGG 5 cut(s) 846, 995, 1311, 1413, 1447
SduI GDGCHC 1 cut(s) 808
SexAI ACCWGGT 1 cut(s) 844
SfaNI GCATC 2 cut(s) 419, 938
SfuI TTCGAA 1 cut(s) 133
SmiMI CAYNNNNRTG 2 cut(s) 519, 693
SmlI CTYRAG 3 cut(s) 345, 999, 1283
SmoI CTYRAG 3 cut(s) 345, 999, 1283
SphI GCATGC 1 cut(s) 1280
SsiI CCGC 2 cut(s) 107, 656
SspI AATATT 1 cut(s) 286
SspMI CTAG 2 cut(s) 534, 762
SstI GAGCTC 1 cut(s) 808
StyD4I CCNGG 5 cut(s) 844, 993, 1309, 1411, 1445
StyI CCWWGG 1 cut(s) 1248
TaaI ACNGT 4 cut(s) 19, 121, 783, 800
TaiI ACGT 1 cut(s) 10
TaqI TCGA 4 cut(s) 28, 133, 578, 1065
TatI WGTACW 1 cut(s) 329
TauI GCSGC 1 cut(s) 110
TfiI GAWTC 2 cut(s) 203, 454
Tru1I TTAA 4 cut(s) 12, 114, 770, 1158
Tru9I TTAA 4 cut(s) 12, 114, 770, 1158
TscAI CASTG 3 cut(s) 252, 669, 805
TseFI GTSAC 2 cut(s) 794, 1418
TseI GCWGC 7 cut(s) 218, 407, 685, 953, 1256, 1273, 1429
Tsp45I GTSAC 2 cut(s) 794, 1418
TspDTI ATGAA 7 cut(s) 40, 75, 288, 500, 708, 720, 1247
TspGWI ACGGA 1 cut(s) 1217
TspRI CASTG 3 cut(s) 252, 669, 805
XapI RAATTY 7 cut(s) 129, 708, 899, 978, 1048, 1129, 1381
XceI RCATGY 1 cut(s) 1280
XcmI CCANNNNNNNNNTGG 1 cut(s) 1001
XmiI GTMKAC 1 cut(s) 1376
XspI CTAG 2 cut(s) 534, 762
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.