Rmu_sc0001353.1_g000046
MYB Family

Protein LHY-like isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001353.1
OG0018620
Physical Location & Seq
Forward (+)
189279 .. 190814
1536 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001353.1_g000046.1.cds

Sequence Viewer

Length: 1311 bp
atggaacgttttaaaactattcgggaccaactctttgtttctggagttttcattcctgatgaagatatagtgtttctgatcctaaatggattacctgttgactttccagctattaagactgtcatcagagctcgaacaacgccaatatctctaagcaagcttcgcacaatgttattggatgttgagtctgatattgttcaagaatcaagatcatttgcttctgctcccatgcttgagcacaaagcactaccactgtcttctcttacagctatgattgtacaaaatattcttgccaattcatctcagagtatgcaatatgggataccaagtacagggccatcatctcaagcaatctttccatcccattatattggatattcttcaatgatacatgctctacacactgctgcatcaaatgttggtttcttgcctaatgttatcaatacaaatctgattccaggtatacctacttataaccattacaatacgtcatcttgtgcctccaatgttcatcattataatgctccaccacctagctctaccatacattttgggataccacataatagtatgatatcaagctcagctctttgtatgctaatgctcctccaaatcatcaagacctgctcccattcactaccaacgttggtgtctgcacacctcatatgttcaacagtccaatctaatcacaatggagctcaacaacatggaaacttttctcaacaaaatgtgcaacctgcctttgtgtcttctgcaaacaaaagtttcacacctgcccaggcgacactcagaaatgcttccacctttagagagtttgtgccttcagtgaaaaaggtaatccctcaagatggaaataactcttatgtcactactgaacttcaaggaaatgagaatttgaagaaaactggtgccgaaaagatagttcaaggtaacttttcttgtgaaactgatatagatgttggggctgttgctgaaaatctcattaagagttgtcaagaagttgttaagggtgttgacggggatgacagcaaggaggaggatataagagttgataaaatatatgtatacagtaggtctatgaacaaagtagatactaaagagttggatcatctgcggagaatattgatgttaaattcaaagaaggaagctgagggcagtttgcagcatgctctcctcaagaaaatcgaagctttgccaacaccaggaacttggctccgcctttcgactccagacagaaatctaatgaattgtagacaagcttgtgggtctacgaatatgtggcgattacttcccctcattcctcctggttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0001067 GO:0001101 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0007275 GO:0007623 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009628 GO:0009648 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009791 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0010033 GO:0010035 GO:0010038 GO:0010228 GO:0010243 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0032501 GO:0032502 GO:0033993 GO:0042221 GO:0042493 GO:0042752 GO:0042754 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043393 GO:0043433 GO:0043496 GO:0043565 GO:0044092 GO:0044212 GO:0044424 GO:0044464 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0046677 GO:0046686 GO:0048511 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048571 GO:0048573 GO:0048574 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051090 GO:0051098 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0060255 GO:0061458 GO:0065007 GO:0065009 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04712 map04712
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

436

Amino Acids

47.84

Weight (kDa)

8.07

Isoelectric Point (pI)

42.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 474, 519
AarI CACCTGC 1 cut(s) 781
Acc36I ACCTGC 3 cut(s) 632, 745, 781
AccB1I GGYRCC 1 cut(s) 908
AccI GTMKAC 4 cut(s) 463, 1065, 1252, 1268
AciI CCGC 2 cut(s) 1114, 1216
AclI AACGTT 2 cut(s) 7, 644
AclWI GGATC 2 cut(s) 73, 1113
AcsI RAATTY 2 cut(s) 892, 1132
AcuI CTGAAG 1 cut(s) 807
AfaI GTAC 2 cut(s) 279, 331
AfiI CCNNNNNNNGG 3 cut(s) 332, 848, 1202
AgsI TTSAA 7 cut(s) 200, 384, 672, 881, 898, 926, 1137
AjnI CCWGG 4 cut(s) 457, 777, 1201, 1303
Alw21I GWGCWC 3 cut(s) 133, 240, 700
AlwI GGATC 2 cut(s) 73, 1113
AoxI GGCC 1 cut(s) 335
ApeKI GCWGC 2 cut(s) 407, 1162
ApoI RAATTY 2 cut(s) 892, 1132
ArsI GACNNNNNNTTYG 2 cut(s) 17, 49
Asp700I GAANNNNTTC 2 cut(s) 715, 796
AspS9I GGNCC 2 cut(s) 25, 335
AvaII GGWCC 1 cut(s) 25
BanI GGYRCC 1 cut(s) 908
BanII GRGCYC 2 cut(s) 133, 700
BbsI GAAGAC 2 cut(s) 249, 741
Bbv12I GWGCWC 3 cut(s) 133, 240, 700
BbvCI CCTCAGC 1 cut(s) 1149
BbvI GCAGC 2 cut(s) 394, 1174
BccI CCATC 3 cut(s) 346, 367, 842
BciT130I CCWGG 4 cut(s) 459, 779, 1203, 1305
BciVI GTATCC 2 cut(s) 315, 549
BfaI CTAG 1 cut(s) 534
BfuAI ACCTGC 3 cut(s) 632, 745, 781
BfuI GTATCC 2 cut(s) 315, 549
BisI GCNGC 2 cut(s) 408, 1163
BlpI GCTNAGC 1 cut(s) 583
BlsI GCNGC 2 cut(s) 409, 1164
Bme1390I CCNGG 4 cut(s) 459, 779, 1203, 1305
Bme18I GGWCC 1 cut(s) 25
BmgT120I GGNCC 2 cut(s) 25, 335
BmiI GGNNCC 3 cut(s) 26, 910, 1214
BmrFI CCNGG 4 cut(s) 459, 779, 1203, 1305
BmsI GCATC 1 cut(s) 419
BpiI GAAGAC 2 cut(s) 249, 741
BpmI CTGGAG 2 cut(s) 63, 1212
Bpu10I CCTNAGC 1 cut(s) 1149
Bpu1102I GCTNAGC 1 cut(s) 583
BpuEI CTTGAG 4 cut(s) 254, 330, 828, 1160
BsaJI CCNNGG 1 cut(s) 777
Bsc4I CCNNNNNNNGG 3 cut(s) 332, 848, 1202
Bse1I ACTGG 1 cut(s) 910
BseBI CCWGG 4 cut(s) 459, 779, 1203, 1305
BseDI CCNNGG 1 cut(s) 777
BseGI GGATG 3 cut(s) 184, 359, 1027
BseLI CCNNNNNNNGG 3 cut(s) 332, 848, 1202
BseMII CTCAG 4 cut(s) 317, 597, 802, 1140
BseNI ACTGG 1 cut(s) 910
BseRI GAGGAG 3 cut(s) 596, 1049, 1163
BseXI GCAGC 2 cut(s) 394, 1174
BsgI GTGCAG 1 cut(s) 639
BshFI GGCC 1 cut(s) 337
BshNI GGYRCC 1 cut(s) 908
BsiHKAI GWGCWC 3 cut(s) 133, 240, 700
BslFI GGGAC 1 cut(s) 38
BslI CCNNNNNNNGG 3 cut(s) 332, 848, 1202
BsmFI GGGAC 1 cut(s) 38
BsnI GGCC 1 cut(s) 337
Bsp1286I GDGCHC 3 cut(s) 133, 240, 700
Bsp1407I TGTACA 1 cut(s) 277
Bsp143I GATC 3 cut(s) 78, 209, 1105
Bsp1720I GCTNAGC 1 cut(s) 583
BspACI CCGC 2 cut(s) 1114, 1216
BspANI GGCC 1 cut(s) 337
BspCNI CTCAG 4 cut(s) 316, 596, 801, 1141
BspLI GGNNCC 3 cut(s) 26, 910, 1214
BspMI ACCTGC 3 cut(s) 632, 745, 781
BspPI GGATC 2 cut(s) 73, 1113
BspT107I GGYRCC 1 cut(s) 908
BsrGI TGTACA 1 cut(s) 277
BsrI ACTGG 1 cut(s) 910
BssECI CCNNGG 1 cut(s) 777
BssMI GATC 3 cut(s) 78, 209, 1105
BssNAI GTATAC 2 cut(s) 464, 1066
Bst1107I GTATAC 2 cut(s) 464, 1066
Bst2UI CCWGG 4 cut(s) 459, 779, 1203, 1305
Bst4CI ACNGT 4 cut(s) 121, 255, 676, 1070
BstAUI TGTACA 1 cut(s) 277
BstC8I GCNNGC 2 cut(s) 158, 1167
BstDEI CTNAG 5 cut(s) 152, 303, 583, 788, 1149
BstF5I GGATG 3 cut(s) 184, 359, 1027
BstKTI GATC 3 cut(s) 81, 212, 1108
BstMBI GATC 3 cut(s) 78, 209, 1105
BstMWI GCNNNNNNNGC 1 cut(s) 162
BstNI CCWGG 4 cut(s) 459, 779, 1203, 1305
BstNSI RCATGY 2 cut(s) 395, 1169
BstSCI CCNGG 4 cut(s) 457, 777, 1201, 1303
BstV1I GCAGC 2 cut(s) 394, 1174
BstV2I GAAGAC 2 cut(s) 249, 741
BstXI CCANNNNNNTGG 2 cut(s) 371, 1209
BstZ17I GTATAC 2 cut(s) 464, 1066
BsuI GTATCC 2 cut(s) 315, 549
BsuRI GGCC 1 cut(s) 337
BtsCI GGATG 3 cut(s) 184, 359, 1027
BtsI GCAGTG 1 cut(s) 402
BtsIMutI CAGTG 3 cut(s) 251, 402, 831
BveI ACCTGC 3 cut(s) 632, 745, 781
Cac8I GCNNGC 2 cut(s) 158, 1167
Cfr13I GGNCC 2 cut(s) 25, 335
Csp6I GTAC 2 cut(s) 278, 330
CviAII CATG 4 cut(s) 229, 392, 707, 1166
CviQI GTAC 2 cut(s) 278, 330
DdeI CTNAG 5 cut(s) 152, 303, 583, 788, 1149
DpnI GATC 3 cut(s) 80, 211, 1107
DpnII GATC 3 cut(s) 78, 209, 1105
DraI TTTAAA 1 cut(s) 13
EciI GGCGGA 1 cut(s) 1205
Ecl136II GAGCTC 2 cut(s) 131, 698
Eco24I GRGCYC 2 cut(s) 133, 700
Eco32I GATATC 1 cut(s) 576
Eco47I GGWCC 1 cut(s) 25
Eco53kI GAGCTC 2 cut(s) 131, 698
Eco57I CTGAAG 1 cut(s) 807
EcoICRI GAGCTC 2 cut(s) 131, 698
EcoRII CCWGG 4 cut(s) 457, 777, 1201, 1303
EcoRV GATATC 1 cut(s) 576
EcoT38I GRGCYC 2 cut(s) 133, 700
FaeI CATG 4 cut(s) 232, 395, 710, 1169
FaqI GGGAC 1 cut(s) 38
FatI CATG 4 cut(s) 228, 391, 706, 1165
FauNDI CATATG 1 cut(s) 665
FblI GTMKAC 4 cut(s) 463, 1065, 1252, 1268
Fnu4HI GCNGC 2 cut(s) 408, 1163
FokI GGATG 3 cut(s) 191, 346, 1034
FriOI GRGCYC 2 cut(s) 133, 700
Fsp4HI GCNGC 2 cut(s) 408, 1163
FspBI CTAG 1 cut(s) 534
GluI GCNGC 2 cut(s) 408, 1163
GsuI CTGGAG 2 cut(s) 63, 1212
HaeIII GGCC 1 cut(s) 337
Hin1II CATG 4 cut(s) 232, 395, 710, 1169
HincII GTYRAC 2 cut(s) 100, 1015
HindII GTYRAC 2 cut(s) 100, 1015
HindIII AAGCTT 3 cut(s) 158, 1188, 1257
HinfI GANTC 4 cut(s) 185, 203, 454, 1225
Hpy166II GTNNAC 6 cut(s) 100, 464, 1015, 1066, 1253, 1269
Hpy188I TCNGA 6 cut(s) 78, 128, 190, 306, 453, 791
Hpy8I GTNNAC 6 cut(s) 100, 464, 1015, 1066, 1253, 1269
HpyAV CCTTC 2 cut(s) 831, 1135
HpyCH4III ACNGT 4 cut(s) 121, 255, 676, 1070
HpyCH4IV ACGT 3 cut(s) 7, 488, 644
HpyCH4V TGCA 6 cut(s) 313, 410, 656, 733, 755, 1162
HpyF10VI GCNNNNNNNGC 1 cut(s) 162
HpyF3I CTNAG 5 cut(s) 152, 303, 583, 788, 1149
HpySE526I ACGT 3 cut(s) 7, 488, 644
Hsp92II CATG 4 cut(s) 232, 395, 710, 1169
Kzo9I GATC 3 cut(s) 78, 209, 1105
LmnI GCTCC 6 cut(s) 229, 529, 609, 632, 695, 1218
Lsp1109I GCAGC 2 cut(s) 394, 1174
LweI GCATC 1 cut(s) 419
MaeI CTAG 1 cut(s) 534
MaeII ACGT 3 cut(s) 7, 488, 644
MaeIII GTNAC 2 cut(s) 865, 929
MalI GATC 3 cut(s) 80, 211, 1107
MboI GATC 3 cut(s) 78, 209, 1105
MboII GAAGA 5 cut(s) 74, 249, 372, 741, 910
MhlI GDGCHC 3 cut(s) 133, 240, 700
MluCI AATT 4 cut(s) 295, 892, 1132, 1246
MlyI GAGTC 2 cut(s) 194, 1219
MmeI TCCRAC 1 cut(s) 1083
MroXI GAANNNNTTC 2 cut(s) 715, 796
MseI TTAA 5 cut(s) 12, 114, 984, 1005, 1130
MslI CAYNNNNRTG 1 cut(s) 519
MspR9I CCNGG 4 cut(s) 459, 779, 1203, 1305
MvaI CCWGG 4 cut(s) 459, 779, 1203, 1305
MwoI GCNNNNNNNGC 1 cut(s) 162
NdeI CATATG 1 cut(s) 665
NdeII GATC 3 cut(s) 78, 209, 1105
NlaIII CATG 4 cut(s) 232, 395, 710, 1169
NlaIV GGNNCC 3 cut(s) 26, 910, 1214
NmuCI GTSAC 1 cut(s) 865
NspI RCATGY 2 cut(s) 395, 1169
PaeI GCATGC 1 cut(s) 1169
PaqCI CACCTGC 1 cut(s) 781
PdmI GAANNNNTTC 2 cut(s) 715, 796
PfeI GAWTC 2 cut(s) 203, 454
PkrI GCNGC 2 cut(s) 409, 1164
PleI GAGTC 2 cut(s) 193, 1219
PpsI GAGTC 2 cut(s) 193, 1219
PsiI TTATAA 2 cut(s) 474, 519
Psp124BI GAGCTC 2 cut(s) 133, 700
Psp1406I AACGTT 2 cut(s) 7, 644
Psp6I CCWGG 4 cut(s) 457, 777, 1201, 1303
PspGI CCWGG 4 cut(s) 457, 777, 1201, 1303
PspN4I GGNNCC 3 cut(s) 26, 910, 1214
PspPI GGNCC 2 cut(s) 25, 335
RsaI GTAC 2 cut(s) 279, 331
RsaNI GTAC 2 cut(s) 278, 330
RseI CAYNNNNRTG 1 cut(s) 519
SacI GAGCTC 2 cut(s) 133, 700
SaqAI TTAA 5 cut(s) 12, 114, 984, 1005, 1130
SatI GCNGC 2 cut(s) 408, 1163
Sau3AI GATC 3 cut(s) 78, 209, 1105
Sau96I GGNCC 2 cut(s) 25, 335
SchI GAGTC 2 cut(s) 194, 1219
ScrFI CCNGG 4 cut(s) 459, 779, 1203, 1305
SduI GDGCHC 3 cut(s) 133, 240, 700
SfaNI GCATC 1 cut(s) 419
SinI GGWCC 1 cut(s) 25
SmiMI CAYNNNNRTG 1 cut(s) 519
SmlI CTYRAG 4 cut(s) 233, 345, 843, 1175
SmoI CTYRAG 4 cut(s) 233, 345, 843, 1175
SphI GCATGC 1 cut(s) 1169
Sse9I AATT 4 cut(s) 295, 892, 1132, 1246
SsiI CCGC 2 cut(s) 1114, 1216
SspI AATATT 2 cut(s) 286, 1122
SspMI CTAG 1 cut(s) 534
SstI GAGCTC 2 cut(s) 133, 700
StyD4I CCNGG 4 cut(s) 457, 777, 1201, 1303
TaaI ACNGT 4 cut(s) 121, 255, 676, 1070
TaiI ACGT 3 cut(s) 10, 491, 647
TaqI TCGA 3 cut(s) 133, 1185, 1223
TasI AATT 4 cut(s) 295, 892, 1132, 1246
TatI WGTACW 2 cut(s) 277, 329
TfiI GAWTC 2 cut(s) 203, 454
Tru1I TTAA 5 cut(s) 12, 114, 984, 1005, 1130
Tru9I TTAA 5 cut(s) 12, 114, 984, 1005, 1130
TscAI CASTG 3 cut(s) 258, 409, 831
TseFI GTSAC 1 cut(s) 865
TseI GCWGC 2 cut(s) 407, 1162
Tsp45I GTSAC 1 cut(s) 865
TspDTI ATGAA 6 cut(s) 40, 75, 288, 500, 1094, 1259
TspRI CASTG 3 cut(s) 258, 409, 831
VpaK11BI GGWCC 1 cut(s) 25
XapI RAATTY 2 cut(s) 892, 1132
XceI RCATGY 2 cut(s) 395, 1169
XmiI GTMKAC 4 cut(s) 463, 1065, 1252, 1268
XmnI GAANNNNTTC 2 cut(s) 715, 796
XspI CTAG 1 cut(s) 534
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.