Rmu_sc0000079.1_g000011

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000079.1
OG0018620
Physical Location & Seq
Reverse (-)
37209 .. 38761
1553 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000079.1_g000011.1.cds

Sequence Viewer

Length: 936 bp
atgaataccagtctattggataattgtctcctctccaacttctgcaatctcatcaccatgcagttagatgatactaactatgtgacttggagatttgtgctagagtctatgttggtagggtgtgatcttatggggtatattgatggatctattccttgtcctccacaatataaaatcacaaaagagactggtattacccctaaggttacagaagagtataaagaatggaggaagcatgattctgctgtaatgactctactcgctagtactttgtcatctgatgctctttcttttattgttgggagcaaaacctcaaaagaagtctggtcttcactttatgagaggtatgctaaactttcaaagttcaaagcttttgagctccaggcctcaatgcagaaaattcagaaagctcttagtatgcctaatgctcctccaaattgtcaagtcctgctcccattcactaccaatgttggtgttccgcaatcagtgcctaattctggatatatgctgcataataatgttggaaatgaaaattgcttttcatcatctgctccctcttatggttatgcacctcaaaatggttctagcacttcatatgttcaacaattcaatcttaatcacagtggagctcaacaacatggaaacttctctcaacaaaatgtgcaacctggtacattcaacaatagttctcagcaaaataatggcttttctcgtaaggagaaattttcttcacaggccatgccttgctctgcatcattgtctgctcttagaaatgcagcctctgtgtcttctgtaaacaaaatttccacacctgcccaggctcaagatggcaataactcttatgtcactactgaacttcaaggaaatgagaatttgaaaactgatgtcgaaaagatagttcaagataatcccttcccaatcaagtactcattttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2 Retrotran_gag_3

Protein Analysis

311

Amino Acids

34.27

Weight (kDa)

6.88

Isoelectric Point (pI)

32.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 820
Acc36I ACCTGC 1 cut(s) 820
AciI CCGC 1 cut(s) 479
AclWI GGATC 1 cut(s) 154
AcsI RAATTY 4 cut(s) 399, 722, 801, 871
AfaI GTAC 3 cut(s) 268, 673, 926
AfiI CCNNNNNNNGG 3 cut(s) 497, 560, 578
AgsI TTSAA 8 cut(s) 360, 367, 602, 610, 679, 860, 877, 902
AjnI CCWGG 3 cut(s) 381, 667, 816
AluBI AGCT 4 cut(s) 371, 379, 410, 629
AluI AGCT 4 cut(s) 371, 379, 410, 629
Alw21I GWGCWC 2 cut(s) 381, 631
Alw26I GTCTC 2 cut(s) 32, 179
AlwI GGATC 1 cut(s) 154
AlwNI CAGNNNCTG 1 cut(s) 782
AoxI GGCC 2 cut(s) 384, 735
ApeKI GCWGC 2 cut(s) 508, 776
ApoI RAATTY 4 cut(s) 399, 722, 801, 871
AsuHPI GGTGA 1 cut(s) 46
AxyI CCTNAGG 1 cut(s) 201
BanII GRGCYC 2 cut(s) 381, 631
BbsI GAAGAC 2 cut(s) 321, 780
Bbv12I GWGCWC 2 cut(s) 381, 631
BbvI GCAGC 2 cut(s) 495, 788
BccI CCATC 2 cut(s) 137, 821
BciT130I CCWGG 3 cut(s) 383, 669, 818
BcoDI GTCTC 2 cut(s) 32, 179
BfaI CTAG 3 cut(s) 101, 264, 585
BfuAI ACCTGC 1 cut(s) 820
BisI GCNGC 2 cut(s) 509, 777
BlsI GCNGC 2 cut(s) 510, 778
BmcAI AGTACT 2 cut(s) 268, 926
Bme1390I CCNGG 3 cut(s) 383, 669, 818
BmrFI CCNGG 3 cut(s) 383, 669, 818
BmsI GCATC 2 cut(s) 271, 761
BpiI GAAGAC 2 cut(s) 321, 780
BpmI CTGGAG 1 cut(s) 365
BpuEI CTTGAG 1 cut(s) 807
BsaJI CCNNGG 1 cut(s) 816
Bsc4I CCNNNNNNNGG 3 cut(s) 497, 560, 578
Bse1I ACTGG 2 cut(s) 9, 193
Bse21I CCTNAGG 1 cut(s) 201
BseBI CCWGG 3 cut(s) 383, 669, 818
BseDI CCNNGG 1 cut(s) 816
BseLI CCNNNNNNNGG 3 cut(s) 497, 560, 578
BseMII CTCAG 1 cut(s) 704
BseNI ACTGG 2 cut(s) 9, 193
BseRI GAGGAG 2 cut(s) 20, 420
BseXI GCAGC 2 cut(s) 495, 788
BshFI GGCC 2 cut(s) 386, 737
BsiHKAI GWGCWC 2 cut(s) 381, 631
BslI CCNNNNNNNGG 3 cut(s) 497, 560, 578
BsmAI GTCTC 2 cut(s) 32, 179
BsnI GGCC 2 cut(s) 386, 737
Bsp1286I GDGCHC 2 cut(s) 381, 631
Bsp143I GATC 2 cut(s) 124, 146
BspACI CCGC 1 cut(s) 479
BspANI GGCC 2 cut(s) 386, 737
BspCNI CTCAG 1 cut(s) 703
BspMI ACCTGC 1 cut(s) 820
BspPI GGATC 1 cut(s) 154
BsrI ACTGG 2 cut(s) 9, 193
BssECI CCNNGG 1 cut(s) 816
BssMI GATC 2 cut(s) 124, 146
Bst2UI CCWGG 3 cut(s) 383, 669, 818
Bst4CI ACNGT 1 cut(s) 623
Bst6I CTCTTC 1 cut(s) 207
BstAPI GCANNNNNTGC 1 cut(s) 487
BstDEI CTNAG 4 cut(s) 201, 413, 690, 767
BstKTI GATC 2 cut(s) 127, 149
BstMAI GTCTC 2 cut(s) 32, 179
BstMBI GATC 2 cut(s) 124, 146
BstMWI GCNNNNNNNGC 1 cut(s) 487
BstNI CCWGG 3 cut(s) 383, 669, 818
BstSCI CCNGG 3 cut(s) 381, 667, 816
BstV1I GCAGC 2 cut(s) 495, 788
BstV2I GAAGAC 2 cut(s) 321, 780
BstX2I RGATCY 1 cut(s) 146
BstXI CCANNNNNNTGG 1 cut(s) 16
BstYI RGATCY 1 cut(s) 146
Bsu36I CCTNAGG 1 cut(s) 201
BsuRI GGCC 2 cut(s) 386, 737
BtsIMutI CAGTG 2 cut(s) 492, 628
BveI ACCTGC 1 cut(s) 820
CaiI CAGNNNCTG 1 cut(s) 782
CsiI ACCWGGT 1 cut(s) 667
Csp6I GTAC 3 cut(s) 267, 672, 925
CviAII CATG 4 cut(s) 58, 236, 638, 739
CviJI RGCY 9 cut(s) 371, 379, 386, 410, 629, 705, 737, 779, 821
CviKI_1 RGCY 9 cut(s) 371, 379, 386, 410, 629, 705, 737, 779, 821
CviQI GTAC 3 cut(s) 267, 672, 925
DdeI CTNAG 4 cut(s) 201, 413, 690, 767
DpnI GATC 2 cut(s) 126, 148
DpnII GATC 2 cut(s) 124, 146
Eam1104I CTCTTC 1 cut(s) 207
EarI CTCTTC 1 cut(s) 207
Ecl136II GAGCTC 2 cut(s) 379, 629
Eco147I AGGCCT 1 cut(s) 386
Eco24I GRGCYC 2 cut(s) 381, 631
Eco53kI GAGCTC 2 cut(s) 379, 629
Eco81I CCTNAGG 1 cut(s) 201
EcoICRI GAGCTC 2 cut(s) 379, 629
EcoRII CCWGG 3 cut(s) 381, 667, 816
EcoT38I GRGCYC 2 cut(s) 381, 631
FaeI CATG 4 cut(s) 61, 239, 641, 742
FatI CATG 4 cut(s) 57, 235, 637, 738
FauNDI CATATG 1 cut(s) 595
Fnu4HI GCNGC 2 cut(s) 509, 777
FriOI GRGCYC 2 cut(s) 381, 631
Fsp4HI GCNGC 2 cut(s) 509, 777
FspBI CTAG 3 cut(s) 101, 264, 585
GluI GCNGC 2 cut(s) 509, 777
GsuI CTGGAG 1 cut(s) 365
HaeIII GGCC 2 cut(s) 386, 737
Hin1II CATG 4 cut(s) 61, 239, 641, 742
HindIII AAGCTT 1 cut(s) 369
HinfI GANTC 3 cut(s) 104, 239, 253
HphI GGTGA 1 cut(s) 46
Hpy166II GTNNAC 1 cut(s) 796
Hpy188I TCNGA 2 cut(s) 280, 405
Hpy188III TCNNGA 3 cut(s) 498, 824, 902
Hpy8I GTNNAC 1 cut(s) 796
HpyAV CCTTC 1 cut(s) 922
HpyCH4III ACNGT 1 cut(s) 623
HpyCH4V TGCA 8 cut(s) 45, 61, 394, 511, 569, 664, 752, 776
HpyF10VI GCNNNNNNNGC 1 cut(s) 487
HpyF3I CTNAG 4 cut(s) 201, 413, 690, 767
Hsp92II CATG 4 cut(s) 61, 239, 641, 742
Kzo9I GATC 2 cut(s) 124, 146
LmnI GCTCC 6 cut(s) 303, 384, 433, 456, 556, 626
Lsp1109I GCAGC 2 cut(s) 495, 788
LweI GCATC 2 cut(s) 271, 761
MabI ACCWGGT 1 cut(s) 667
MaeI CTAG 3 cut(s) 101, 264, 585
MaeIII GTNAC 3 cut(s) 82, 205, 844
MalI GATC 2 cut(s) 126, 148
MboI GATC 2 cut(s) 124, 146
MboII GAAGA 4 cut(s) 224, 321, 720, 780
MflI RGATCY 1 cut(s) 146
MhlI GDGCHC 2 cut(s) 381, 631
MluCI AATT 9 cut(s) 22, 399, 436, 493, 532, 605, 722, 801, 871
MlyI GAGTC 2 cut(s) 113, 247
MmeI TCCRAC 2 cut(s) 60, 502
MseI TTAA 1 cut(s) 615
MslI CAYNNNNRTG 2 cut(s) 56, 516
MspR9I CCNGG 3 cut(s) 383, 669, 818
MvaI CCWGG 3 cut(s) 383, 669, 818
MwoI GCNNNNNNNGC 1 cut(s) 487
NdeI CATATG 1 cut(s) 595
NdeII GATC 2 cut(s) 124, 146
NlaIII CATG 4 cut(s) 61, 239, 641, 742
NmuCI GTSAC 2 cut(s) 82, 844
PaqCI CACCTGC 1 cut(s) 820
PceI AGGCCT 1 cut(s) 386
PfeI GAWTC 1 cut(s) 239
PkrI GCNGC 2 cut(s) 510, 778
PleI GAGTC 2 cut(s) 112, 247
PpsI GAGTC 2 cut(s) 112, 247
Psp124BI GAGCTC 2 cut(s) 381, 631
Psp6I CCWGG 3 cut(s) 381, 667, 816
PspGI CCWGG 3 cut(s) 381, 667, 816
PstNI CAGNNNCTG 1 cut(s) 782
PsuI RGATCY 1 cut(s) 146
RsaI GTAC 3 cut(s) 268, 673, 926
RsaNI GTAC 3 cut(s) 267, 672, 925
RseI CAYNNNNRTG 2 cut(s) 56, 516
SacI GAGCTC 2 cut(s) 381, 631
SaqAI TTAA 1 cut(s) 615
SatI GCNGC 2 cut(s) 509, 777
Sau3AI GATC 2 cut(s) 124, 146
ScaI AGTACT 2 cut(s) 268, 926
SchI GAGTC 2 cut(s) 113, 247
ScrFI CCNGG 3 cut(s) 383, 669, 818
SduI GDGCHC 2 cut(s) 381, 631
SexAI ACCWGGT 1 cut(s) 667
SfaNI GCATC 2 cut(s) 271, 761
SmiMI CAYNNNNRTG 2 cut(s) 56, 516
SmlI CTYRAG 1 cut(s) 822
SmoI CTYRAG 1 cut(s) 822
Sse9I AATT 9 cut(s) 22, 399, 436, 493, 532, 605, 722, 801, 871
SseBI AGGCCT 1 cut(s) 386
SsiI CCGC 1 cut(s) 479
SspMI CTAG 3 cut(s) 101, 264, 585
SstI GAGCTC 2 cut(s) 381, 631
StuI AGGCCT 1 cut(s) 386
StyD4I CCNGG 3 cut(s) 381, 667, 816
TaaI ACNGT 1 cut(s) 623
TaqI TCGA 1 cut(s) 888
TasI AATT 9 cut(s) 22, 399, 436, 493, 532, 605, 722, 801, 871
TatI WGTACW 2 cut(s) 266, 924
TfiI GAWTC 1 cut(s) 239
Tru1I TTAA 1 cut(s) 615
Tru9I TTAA 1 cut(s) 615
TscAI CASTG 2 cut(s) 492, 628
TseFI GTSAC 2 cut(s) 82, 844
TseI GCWGC 2 cut(s) 508, 776
Tsp45I GTSAC 2 cut(s) 82, 844
TspDTI ATGAA 4 cut(s) 17, 531, 543, 582
TspRI CASTG 2 cut(s) 492, 628
XapI RAATTY 4 cut(s) 399, 722, 801, 871
XcmI CCANNNNNNNNNTGG 1 cut(s) 824
XspI CTAG 3 cut(s) 101, 264, 585
ZrmI AGTACT 2 cut(s) 268, 926
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.