Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0019524

Physical Location & Seq

Genomic Coordinates Reverse (-)

68223108 .. 68229678

Gene Structure 6571 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00217700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGGCGGCTCGAGATCTCTCGCTCTTTCTCCTTCCCCTACACTCTCTCCTCCTCCGTACAGCAGCAACGATTACGCTCTCCCCGCGCCTCATACACCGCTTCTCCGACGAGGCCAAGGCTCTCAAGGCCTCCCACAAAGACGGCGACGCCAAATGGCTCGGTCGGTGGCCACGAGAGAACTCTATGGACTACTATCACCTCTTCGCCGGCCACCGACTTCCCGGTGCCGCGAAGATGAAGCTCGGCACTTTTTGTCATCGGTTCCAGGGAGCAATTTGCAAAGGAATATGGATTGATCTTCATGGAGGCTTCGCTAAAACTGCTCGAAATGTTGAGGAGGCATTCATAAGAACCGCTGCAACCATATACAAGAAGATTCAAGATGGCGTTTTTGATGTGTCGAATGAGGTGGACATGGATCATGGTGGACATTGGGCATTTCCCAACGAGCTGAAACCATTAGGCCAACAGAGAACTCTTTTCTTAAAGGGAAGATTCCCTGGTCTCCATCTTATCTCCCTCTCCCGCTCTTCCCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004190 GO:0005575 GO:0005623 GO:0005886 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0016020 GO:0016787 GO:0019538 GO:0030163 GO:0031224 GO:0031225 GO:0031226 GO:0043170 GO:0044238 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0070001 GO:0070011 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04071 ko04140 ko04142 ko04210 ko04915 ko05152 map04071 map04140 map04142 map04210 map04915 map05152

Pfam Domains

Protein Families

TAXi_C TAXi_N

Protein Analysis

179

Amino Acids

20.15

Weight (kDa)

9.84

Isoelectric Point (pI)

31.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019524)

Species	Orthologous Gene IDs
rosa_roxburghii	Rroxscaffold_2G00108500 Rroxscaffold_2G00125310 Rroxscaffold_4G00300170 Rroxscaffold_4G00304110 Rroxscaffold_5G00363650 Rroxscaffold_6G00415650 Rroxscaffold_7G00200980 Rroxscaffold_7G00217700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	224
AccBSI	CCGCTC	1 cut(s)	528
AccII	CGCG	2 cut(s)	85, 230
AciI	CCGC	6 cut(s)	5, 83, 97, 228, 354, 526
AclWI	GGATC	1 cut(s)	426
AcoI	YGGCCR	2 cut(s)	167, 208
AcyI	GRCGYC	1 cut(s)	147
AfaI	GTAC	1 cut(s)	58
AgsI	TTSAA	1 cut(s)	380
AjnI	CCWGG	2 cut(s)	264, 499
AluBI	AGCT	2 cut(s)	241, 451
AluI	AGCT	2 cut(s)	241, 451
Alw26I	GTCTC	1 cut(s)	509
AlwI	GGATC	1 cut(s)	426
Ama87I	CYCGRG	1 cut(s)	9
AoxI	GGCC	5 cut(s)	111, 126, 167, 208, 463
ApeKI	GCWGC	2 cut(s)	62, 356
AspLEI	GCGC	1 cut(s)	87
AsuC2I	CCSGG	1 cut(s)	222
AsuHPI	GGTGA	1 cut(s)	188
AvaI	CYCGRG	1 cut(s)	9
BalI	TGGCCA	1 cut(s)	169
BanI	GGYRCC	1 cut(s)	224
BauI	CACGAG	1 cut(s)	171
BbvI	GCAGC	2 cut(s)	74, 343
BccI	CCATC	2 cut(s)	377, 516
BceAI	ACGGC	1 cut(s)	157
BciT130I	CCWGG	2 cut(s)	266, 501
BcnI	CCSGG	1 cut(s)	222
BcoDI	GTCTC	1 cut(s)	509
BfaI	CTAG	1 cut(s)	538
BglII	AGATCT	1 cut(s)	13
BisI	GCNGC	4 cut(s)	6, 63, 228, 357
BlsI	GCNGC	4 cut(s)	7, 64, 229, 358
Bme1390I	CCNGG	3 cut(s)	222, 266, 501
BmeT110I	CYCGRG	1 cut(s)	9
BmiI	GGNNCC	2 cut(s)	226, 263
BmrFI	CCNGG	3 cut(s)	222, 266, 501
BpuEI	CTTGAG	1 cut(s)	107
BpuMI	CCSGG	1 cut(s)	222
BsaHI	GRCGYC	1 cut(s)	147
BsaI	GGTCTC	1 cut(s)	509
BsaJI	CCNNGG	3 cut(s)	114, 265, 499
BsaXI	ACNNNNNCTCC	4 cut(s)	30, 60, 86, 116
Bse118I	RCCGGY	1 cut(s)	206
BseBI	CCWGG	2 cut(s)	266, 501
BseDI	CCNNGG	3 cut(s)	114, 265, 499
BseRI	GAGGAG	3 cut(s)	38, 41, 350
BseXI	GCAGC	2 cut(s)	74, 343
Bsh1236I	CGCG	2 cut(s)	85, 230
Bsh1285I	CGRYCG	1 cut(s)	163
BshFI	GGCC	5 cut(s)	113, 128, 169, 210, 465
BshNI	GGYRCC	1 cut(s)	224
BsiEI	CGRYCG	1 cut(s)	163
BsiHKCI	CYCGRG	1 cut(s)	9
BsiSI	CCGG	2 cut(s)	207, 222
BsmAI	GTCTC	1 cut(s)	509
BsmI	GAATGC	1 cut(s)	341
BsnI	GGCC	5 cut(s)	113, 128, 169, 210, 465
Bso31I	GGTCTC	1 cut(s)	509
BsoBI	CYCGRG	1 cut(s)	9
Bsp143I	GATC	3 cut(s)	13, 295, 418
BspACI	CCGC	6 cut(s)	5, 83, 97, 228, 354, 526
BspANI	GGCC	5 cut(s)	113, 128, 169, 210, 465
BspFNI	CGCG	2 cut(s)	85, 230
BspLI	GGNNCC	2 cut(s)	226, 263
BspPI	GGATC	1 cut(s)	426
BspQI	GCTCTTC	1 cut(s)	535
BspT107I	GGYRCC	1 cut(s)	224
BspTNI	GGTCTC	1 cut(s)	509
BsrBI	CCGCTC	1 cut(s)	528
BsrFI	RCCGGY	1 cut(s)	206
BssAI	RCCGGY	1 cut(s)	206
BssECI	CCNNGG	3 cut(s)	114, 265, 499
BssMI	GATC	3 cut(s)	13, 295, 418
BssNI	GRCGYC	1 cut(s)	147
BssSI	CACGAG	1 cut(s)	171
BssT1I	CCWWGG	1 cut(s)	114
Bst2BI	CACGAG	1 cut(s)	171
Bst2UI	CCWGG	2 cut(s)	266, 501
Bst6I	CTCTTC	2 cut(s)	206, 535
BstACI	GRCGYC	1 cut(s)	147
BstC8I	GCNNGC	1 cut(s)	208
BstFNI	CGCG	2 cut(s)	85, 230
BstHHI	GCGC	1 cut(s)	87
BstKTI	GATC	3 cut(s)	16, 298, 421
BstMAI	GTCTC	1 cut(s)	509
BstMBI	GATC	3 cut(s)	13, 295, 418
BstMCI	CGRYCG	1 cut(s)	163
BstMWI	GCNNNNNNNGC	3 cut(s)	82, 125, 320
BstNI	CCWGG	2 cut(s)	266, 501
BstSCI	CCNGG	3 cut(s)	220, 264, 499
BstUI	CGCG	2 cut(s)	85, 230
BstV1I	GCAGC	2 cut(s)	74, 343
BstX2I	RGATCY	1 cut(s)	13
BstYI	RGATCY	1 cut(s)	13
BsuRI	GGCC	5 cut(s)	113, 128, 169, 210, 465
Cac8I	GCNNGC	1 cut(s)	208
CfoI	GCGC	1 cut(s)	87
Cfr10I	RCCGGY	1 cut(s)	206
CseI	GACGC	1 cut(s)	155
Csp6I	GTAC	1 cut(s)	57
CviAII	CATG	3 cut(s)	302, 415, 422
CviQI	GTAC	1 cut(s)	57
DpnI	GATC	3 cut(s)	15, 297, 420
DpnII	GATC	3 cut(s)	13, 295, 418
EaeI	YGGCCR	2 cut(s)	167, 208
Eam1104I	CTCTTC	2 cut(s)	206, 535
EarI	CTCTTC	2 cut(s)	206, 535
Eco130I	CCWWGG	1 cut(s)	114
Eco147I	AGGCCT	1 cut(s)	128
Eco31I	GGTCTC	1 cut(s)	509
Eco88I	CYCGRG	1 cut(s)	9
EcoRII	CCWGG	2 cut(s)	264, 499
EcoT14I	CCWWGG	1 cut(s)	114
ErhI	CCWWGG	1 cut(s)	114
FaeI	CATG	3 cut(s)	305, 418, 425
FaiI	YATR	9 cut(s)	92, 185, 289, 303, 347, 365, 367, 416, 423
FatI	CATG	3 cut(s)	301, 414, 421
FauI	CCCGC	2 cut(s)	90, 533
Fnu4HI	GCNGC	4 cut(s)	6, 63, 228, 357
Fsp4HI	GCNGC	4 cut(s)	6, 63, 228, 357
FspBI	CTAG	1 cut(s)	538
GlaI	GCGC	1 cut(s)	86
GluI	GCNGC	4 cut(s)	6, 63, 228, 357
HaeIII	GGCC	5 cut(s)	113, 128, 169, 210, 465
HapII	CCGG	2 cut(s)	207, 222
HgaI	GACGC	1 cut(s)	155
HhaI	GCGC	1 cut(s)	87
Hin1I	GRCGYC	1 cut(s)	147
Hin1II	CATG	3 cut(s)	305, 418, 425
Hin6I	GCGC	1 cut(s)	85
HinP1I	GCGC	1 cut(s)	85
HinfI	GANTC	2 cut(s)	376, 495
HpaII	CCGG	2 cut(s)	207, 222
HphI	GGTGA	1 cut(s)	188
Hpy166II	GTNNAC	2 cut(s)	412, 428
Hpy188I	TCNGA	1 cut(s)	106
Hpy188III	TCNNGA	2 cut(s)	11, 380
Hpy8I	GTNNAC	2 cut(s)	412, 428
Hpy99I	CGWCG	2 cut(s)	110, 149
HpyAV	CCTTC	1 cut(s)	41
HpyCH4V	TGCA	2 cut(s)	279, 359
HpyF10VI	GCNNNNNNNGC	3 cut(s)	82, 125, 320
Hsp92I	GRCGYC	1 cut(s)	147
Hsp92II	CATG	3 cut(s)	305, 418, 425
HspAI	GCGC	1 cut(s)	85
KroI	GCCGGC	1 cut(s)	206
KroNI	GCCGGC	1 cut(s)	208
Kzo9I	GATC	3 cut(s)	13, 295, 418
LguI	GCTCTTC	1 cut(s)	535
LmnI	GCTCC	1 cut(s)	269
LpnPI	CCDG	6 cut(s)	220, 235, 251, 278, 486, 513
Lsp1109I	GCAGC	2 cut(s)	74, 343
MaeI	CTAG	1 cut(s)	538
MalI	GATC	3 cut(s)	15, 297, 420
MbiI	CCGCTC	1 cut(s)	528
MboI	GATC	3 cut(s)	13, 295, 418
MboII	GAAGA	6 cut(s)	193, 244, 290, 385, 504, 522
MflI	RGATCY	1 cut(s)	13
MlsI	TGGCCA	1 cut(s)	169
MluCI	AATT	1 cut(s)	273
MluNI	TGGCCA	1 cut(s)	169
MmeI	TCCRAC	1 cut(s)	129
Mox20I	TGGCCA	1 cut(s)	169
MroNI	GCCGGC	1 cut(s)	206
MscI	TGGCCA	1 cut(s)	169
MseI	TTAA	1 cut(s)	485
Msp20I	TGGCCA	1 cut(s)	169
MspA1I	CMGCKG	1 cut(s)	356
MspI	CCGG	2 cut(s)	207, 222
MspR9I	CCNGG	3 cut(s)	222, 266, 501
Mva1269I	GAATGC	1 cut(s)	341
MvaI	CCWGG	2 cut(s)	266, 501
MvnI	CGCG	2 cut(s)	85, 230
MwoI	GCNNNNNNNGC	3 cut(s)	82, 125, 320
NaeI	GCCGGC	1 cut(s)	208
NciI	CCSGG	1 cut(s)	222
NdeII	GATC	3 cut(s)	13, 295, 418
NgoMIV	GCCGGC	1 cut(s)	206
NlaIII	CATG	3 cut(s)	305, 418, 425
NlaIV	GGNNCC	2 cut(s)	226, 263
NmeAIII	GCCGAG	1 cut(s)	222
PaeR7I	CTCGAG	1 cut(s)	9
PceI	AGGCCT	1 cut(s)	128
PciSI	GCTCTTC	1 cut(s)	535
PcsI	WCGNNNNNNNCGW	1 cut(s)	169
PctI	GAATGC	1 cut(s)	341
PdiI	GCCGGC	1 cut(s)	208
PfeI	GAWTC	2 cut(s)	376, 495
PkrI	GCNGC	4 cut(s)	7, 64, 229, 358
Psp6I	CCWGG	2 cut(s)	264, 499
PspGI	CCWGG	2 cut(s)	264, 499
PspN4I	GGNNCC	2 cut(s)	226, 263
PsuI	RGATCY	1 cut(s)	13
RsaI	GTAC	1 cut(s)	58
RsaNI	GTAC	1 cut(s)	57
SapI	GCTCTTC	1 cut(s)	535
SaqAI	TTAA	1 cut(s)	485
SatI	GCNGC	4 cut(s)	6, 63, 228, 357
Sau3AI	GATC	3 cut(s)	13, 295, 418
ScrFI	CCNGG	3 cut(s)	222, 266, 501
SetI	ASST	4 cut(s)	201, 243, 411, 453
Sfr274I	CTCGAG	1 cut(s)	9
SlaI	CTCGAG	1 cut(s)	9
SmlI	CTYRAG	2 cut(s)	9, 122
SmoI	CTYRAG	2 cut(s)	9, 122
Sse9I	AATT	1 cut(s)	273
SseBI	AGGCCT	1 cut(s)	128
SsiI	CCGC	6 cut(s)	5, 83, 97, 228, 354, 526
SspMI	CTAG	1 cut(s)	538
StuI	AGGCCT	1 cut(s)	128
StyD4I	CCNGG	3 cut(s)	220, 264, 499
StyI	CCWWGG	1 cut(s)	114
TaqI	TCGA	3 cut(s)	10, 325, 401
TaqII	GACCGA	1 cut(s)	149
TasI	AATT	1 cut(s)	273
TauI	GCSGC	2 cut(s)	8, 230
TfiI	GAWTC	2 cut(s)	376, 495
Tru1I	TTAA	1 cut(s)	485
Tru9I	TTAA	1 cut(s)	485
TseI	GCWGC	2 cut(s)	62, 356
TspDTI	ATGAA	3 cut(s)	251, 290, 334
TspGWI	ACGGA	1 cut(s)	44
XhoI	CTCGAG	1 cut(s)	9
XspI	CTAG	1 cut(s)	538

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.